Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Reverse (-)

51052090 .. 51058561

Gene Structure 6472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGTGATGATAAAGAAAGGGGAAGAGAAGAGCAGTGATTACAGTGAAAAGGGAATGCGACTGGGAAAATACGAGTTGGGAAAGACTCTCGGCGAGGGCAATTTCGGCAAAGTCAAGTTTGCTAAGGACGTCGGCACCGGCCAACCATTTGCCGTTAAGATTCTAGAGAAGAAGAGAATTAACGACCACAACATCGCCGACCAGATAAAGAGGGAGATTGGCACTTTGAAGCTTCTAAAACATCCAAACGTCGTCCGATTACACGAGGTTGTGGCAAGCAAAACCAAGATTTACATGGTCCTAGAATATGTTACTGGCGGGGAATTGTTTGACAAAATTGAAGATGGGTTGCTGCATACAACCTGTGGAAGCCCAAATTACGTTGCTCCTGAGATCCTCGCTAATAGAGGGTATGATGGTGGTGCCTCTGATATATGGTCATGTGGTGTCATCTTATATGTCATTCTAACGGGGTATCTCCCGTTCGATGATAGGAATCTTGCAGTTCTCTATCAAAAGATATTGAAGGGGGATGTTCAGATACCCAAATGGTTATCACCTGGTGCTCAAAACTTGATAAGAAGGTTTCTTGATCCCAATCCTCTCACTAGAATAAACATGACAGACATCAAGTCAGATGAATGGTTCAAGCAGGATTACTTTCCTGCAAAACCCGACGAAGAAGAGGAAGATATAAATGTTGATACCAAAGATTTGTCAATAAATGAAGCGCCATCTGAAGGGAAGAAGAGTCCAGATTTGCGGCACTCACCCACCCTTATCAATGCCTTTCAGTTGATTGGAATGTCCTCATGTCTAGACCTCTCTGGCTTCTTTGAGAAAGAGGATGTGTCTGAGAGGAAGATCAGATTTACTTCCAACCACTCTGCAAAAGAATTGCTTGAGAGGATTGAAGAAATTGTAACAGAGATGGGATATGGTGTCCAGAAGAAAAATGGAAGGTTAAAGGTGATGCAAGAGAACAAGGGGCAGAGAAATCTGGGTAGTCTCTCAGTTGCAGCAGAGGTGTTTGAGTTAAGCCCGACATTATACGTAGTTGAATTAAGAAAATCATACGGAGATCCTTCTGCATATAGACAGTTGTGTAAAAAGCTATCAAATGATTTAGGTGTTCCATCTAGCCAAGAATTGTTGGCCAGCGAGCTTGCAATCTCTTGCCAGTTATTCTCCATGGATTCTATTGGGGCAAGCCTCGGAATAACATTCACACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

411

Amino Acids

45.96

Weight (kDa)

6.0

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	24 - 115	7.1e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	25 - 114	3.6e-13	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	118 - 216	1.6e-18	Protein kinase domain
NAF	PF03822	258 - 317	1.5e-20	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccB1I	GGYRCC	2 cut(s)	134, 422
AciI	CCGC	2 cut(s)	318, 763
AclWI	GGATC	3 cut(s)	388, 587, 1076
AcoI	YGGCCR	2 cut(s)	139, 1155
AcuI	CTGAAG	1 cut(s)	759
AcyI	GRCGYC	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	563
AfiI	CCNNNNNNNGG	1 cut(s)	740
AgsI	TTSAA	6 cut(s)	229, 341, 526, 649, 914, 1061
AhdI	GACNNNNNGTC	1 cut(s)	631
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	3 cut(s)	232, 1114, 1165
AluI	AGCT	3 cut(s)	232, 1114, 1165
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	1 cut(s)	1013
AlwI	GGATC	3 cut(s)	388, 587, 1076
AoxI	GGCC	2 cut(s)	139, 1155
ApeKI	GCWGC	2 cut(s)	352, 1019
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	4 cut(s)	16, 549, 762, 982
AvaII	GGWCC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	1157
BanI	GGYRCC	2 cut(s)	134, 422
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	2 cut(s)	339, 1031
BccI	CCATC	5 cut(s)	338, 410, 742, 925, 1144
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	561
BcoDI	GTCTC	1 cut(s)	1013
BfaI	CTAG	5 cut(s)	164, 302, 609, 818, 1140
BfoI	RGCGCY	1 cut(s)	734
BisI	GCNGC	3 cut(s)	353, 764, 1020
BlsI	GCNGC	3 cut(s)	354, 765, 1021
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	298
BmeRI	GACNNNNNGTC	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	136, 424
BmrFI	CCNGG	1 cut(s)	561
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	963
BmuI	ACTGGG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	923
BsaAI	YACGTR	1 cut(s)	1054
BsaBI	GATNNNNATC	2 cut(s)	495, 597
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	1191, 1213
Bsc4I	CCNNNNNNNGG	1 cut(s)	740
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	3 cut(s)	66, 319, 1180
Bse8I	GATNNNNATC	2 cut(s)	495, 597
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	1191, 1213
BseGI	GGATG	3 cut(s)	241, 538, 853
BseJI	GATNNNNATC	2 cut(s)	495, 597
BseLI	CCNNNNNNNGG	1 cut(s)	740
BseMII	CTCAG	3 cut(s)	381, 846, 1026
BseNI	ACTGG	3 cut(s)	66, 319, 1180
BseXI	GCAGC	2 cut(s)	339, 1031
BshFI	GGCC	2 cut(s)	141, 1157
BshNI	GGYRCC	2 cut(s)	134, 422
BsiHKAI	GWGCWC	1 cut(s)	568
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	740
BsmAI	GTCTC	1 cut(s)	1013
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	141, 1157
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	4 cut(s)	393, 592, 864, 1081
Bsp19I	CCATGG	1 cut(s)	1191
BspACI	CCGC	2 cut(s)	318, 763
BspANI	GGCC	2 cut(s)	141, 1157
BspCNI	CTCAG	3 cut(s)	382, 847, 1025
BspLI	GGNNCC	2 cut(s)	136, 424
BspPI	GGATC	3 cut(s)	388, 587, 1076
BspQI	GCTCTTC	1 cut(s)	23
BspT107I	GGYRCC	2 cut(s)	134, 422
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	3 cut(s)	66, 319, 1180
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	1191, 1213
BssMI	GATC	4 cut(s)	393, 592, 864, 1081
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	1191
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	44, 1101
Bst6I	CTCTTC	5 cut(s)	18, 23, 167, 678, 743
BstACI	GRCGYC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	1054
BstC8I	GCNNGC	5 cut(s)	277, 1159, 1163, 1167, 1210
BstDEI	CTNAG	4 cut(s)	123, 390, 855, 1012
BstDSI	CCRYGG	1 cut(s)	1191
BstF5I	GGATG	3 cut(s)	241, 538, 853
BstH2I	RGCGCY	1 cut(s)	734
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	4 cut(s)	396, 595, 867, 1084
BstMAI	GTCTC	1 cut(s)	1013
BstMBI	GATC	4 cut(s)	393, 592, 864, 1081
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	559
BstSNI	TACGTA	1 cut(s)	1054
BstV1I	GCAGC	2 cut(s)	339, 1031
BstX2I	RGATCY	2 cut(s)	393, 1081
BstYI	RGATCY	2 cut(s)	393, 1081
BsuRI	GGCC	2 cut(s)	141, 1157
BtgI	CCRYGG	1 cut(s)	1191
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	241, 538, 853
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	40, 49
Cac8I	GCNNGC	5 cut(s)	277, 1159, 1163, 1167, 1210
CfoI	GCGC	1 cut(s)	733
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	298
CsiI	ACCWGGT	1 cut(s)	559
CviAII	CATG	5 cut(s)	295, 441, 619, 813, 1192
DdeI	CTNAG	4 cut(s)	123, 390, 855, 1012
DpnI	GATC	4 cut(s)	395, 594, 866, 1083
DpnII	GATC	4 cut(s)	393, 592, 864, 1081
DraIII	CACNNNGTG	1 cut(s)	563
DriI	GACNNNNNGTC	1 cut(s)	631
EaeI	YGGCCR	2 cut(s)	139, 1155
Eam1104I	CTCTTC	5 cut(s)	18, 23, 167, 678, 743
Eam1105I	GACNNNNNGTC	1 cut(s)	631
EarI	CTCTTC	5 cut(s)	18, 23, 167, 678, 743
Eco105I	TACGTA	1 cut(s)	1054
Eco130I	CCWWGG	1 cut(s)	1191
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	759
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	1191
ErhI	CCWWGG	1 cut(s)	1191
FaeI	CATG	5 cut(s)	298, 444, 622, 816, 1195
FalI	AAGNNNNNCTT	2 cut(s)	885, 917
FatI	CATG	5 cut(s)	294, 440, 618, 812, 1191
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	3 cut(s)	353, 764, 1020
FokI	GGATG	3 cut(s)	228, 545, 860
Fsp4HI	GCNGC	3 cut(s)	353, 764, 1020
FspBI	CTAG	5 cut(s)	164, 302, 609, 818, 1140
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	3 cut(s)	353, 764, 1020
HaeII	RGCGCY	1 cut(s)	734
HaeIII	GGCC	2 cut(s)	141, 1157
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	733
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	5 cut(s)	298, 444, 622, 816, 1195
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	5 cut(s)	85, 160, 496, 751, 1196
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	4 cut(s)	16, 549, 762, 982
Hpy188I	TCNGA	8 cut(s)	257, 430, 540, 637, 739, 856, 869, 1217
Hpy188III	TCNNGA	6 cut(s)	164, 389, 590, 755, 818, 946
Hpy99I	CGWCG	3 cut(s)	134, 254, 680
HpyAV	CCTTC	5 cut(s)	520, 576, 734, 954, 1095
HpyCH4III	ACNGT	2 cut(s)	44, 1101
HpyCH4IV	ACGT	4 cut(s)	129, 249, 381, 1053
HpyCH4V	TGCA	8 cut(s)	355, 503, 668, 890, 976, 1019, 1091, 1169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	4 cut(s)	123, 390, 855, 1012
HpySE526I	ACGT	4 cut(s)	129, 249, 381, 1053
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	5 cut(s)	298, 444, 622, 816, 1195
HspAI	GCGC	1 cut(s)	731
Kzo9I	GATC	4 cut(s)	393, 592, 864, 1081
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	2 cut(s)	339, 1031
LweI	GCATC	1 cut(s)	963
MabI	ACCWGGT	1 cut(s)	559
MaeI	CTAG	5 cut(s)	164, 302, 609, 818, 1140
MaeII	ACGT	4 cut(s)	129, 249, 381, 1053
MaeIII	GTNAC	2 cut(s)	310, 922
MalI	GATC	4 cut(s)	395, 594, 866, 1083
MboI	GATC	4 cut(s)	393, 592, 864, 1081
MflI	RGATCY	2 cut(s)	393, 1081
MhlI	GDGCHC	1 cut(s)	568
MlsI	TGGCCA	1 cut(s)	1157
MluCI	AATT	9 cut(s)	100, 177, 323, 336, 376, 896, 918, 1061, 1148
MluNI	TGGCCA	1 cut(s)	1157
MlyI	GAGTC	2 cut(s)	79, 760
MmeI	TCCRAC	1 cut(s)	903
Mox20I	TGGCCA	1 cut(s)	1157
MscI	TGGCCA	1 cut(s)	1157
MseI	TTAA	6 cut(s)	156, 180, 965, 1037, 1064, 1234
Msp20I	TGGCCA	1 cut(s)	1157
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	1191
NdeII	GATC	4 cut(s)	393, 592, 864, 1081
NlaIII	CATG	5 cut(s)	298, 444, 622, 816, 1195
NlaIV	GGNNCC	2 cut(s)	136, 424
NmeAIII	GCCGAG	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	160, 496, 1196
PkrI	GCNGC	3 cut(s)	354, 765, 1021
PleI	GAGTC	2 cut(s)	79, 759
PpsI	GAGTC	2 cut(s)	79, 759
Ppu21I	YACGTR	1 cut(s)	1054
Psp6I	CCWGG	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	2 cut(s)	136, 424
PspPI	GGNCC	1 cut(s)	298
PsrI	GAACNNNNNNTAC	2 cut(s)	467, 499
PsuI	RGATCY	2 cut(s)	393, 1081
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	6 cut(s)	156, 180, 965, 1037, 1064, 1234
SatI	GCNGC	3 cut(s)	353, 764, 1020
Sau3AI	GATC	4 cut(s)	393, 592, 864, 1081
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	2 cut(s)	79, 760
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	568
SexAI	ACCWGGT	1 cut(s)	559
SfaNI	GCATC	1 cut(s)	963
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
SnaBI	TACGTA	1 cut(s)	1054
Sse9I	AATT	9 cut(s)	100, 177, 323, 336, 376, 896, 918, 1061, 1148
SsiI	CCGC	2 cut(s)	318, 763
SspMI	CTAG	5 cut(s)	164, 302, 609, 818, 1140
StyD4I	CCNGG	1 cut(s)	559
StyI	CCWWGG	1 cut(s)	1191
TaaI	ACNGT	2 cut(s)	44, 1101
TaiI	ACGT	4 cut(s)	132, 252, 384, 1056
TaqI	TCGA	1 cut(s)	486
TasI	AATT	9 cut(s)	100, 177, 323, 336, 376, 896, 918, 1061, 1148
TauI	GCSGC	1 cut(s)	766
TfiI	GAWTC	3 cut(s)	160, 496, 1196
Tru1I	TTAA	6 cut(s)	156, 180, 965, 1037, 1064, 1234
Tru9I	TTAA	6 cut(s)	156, 180, 965, 1037, 1064, 1234
TscAI	CASTG	2 cut(s)	40, 49
TseI	GCWGC	2 cut(s)	352, 1019
TspDTI	ATGAA	2 cut(s)	654, 741
TspGWI	ACGGA	1 cut(s)	1092
TspRI	CASTG	2 cut(s)	40, 49
VpaK11BI	GGWCC	1 cut(s)	298
XbaI	TCTAGA	2 cut(s)	163, 817
XcmI	CCANNNNNNNNNTGG	2 cut(s)	292, 953
XspI	CTAG	5 cut(s)	164, 302, 609, 818, 1140
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.