Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009627.1

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Reverse (-)

22824 .. 27318

Gene Structure 4495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009627.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

atggtgatgataaagaaaggggaagagaagagcagtgattacagtgcaaagggaatgcgactgggaaaatacgagttgggaaagactctcggcgagggcaatttcggcaaagtcaagtttgctaaggacgtcggcaccggccaaccatttgccgttaagattctagagaagaagagaattaacgaccacaacatcgccgaccagattaagagggagattggcactttgaagcttctaaaacatccaaacgtcgtccgattacacgaggttgtggcaagcaaaaccaagatttacatggtcctagaatatgttactggcggggaattgtttgacaaaattgcacaaaagggaagagctacagaatctgaaggtagaaagcttttccaacagttaattgatggtgtgagctactgccacaaccaaggcgttttccatcgggaccttaagctggagaatattcttgttgattccaaaggaaacataaagatatctgactttggccttagtgctttgccccagcattttagggaagatgggttgctgcatacaacctgtggaagcccaaattacgttgctcctgagatcctcgctaatagaggttatgatggtggcgcctctgatatatggtcatgtggtgtcatcttatatgtcattctaactgggtatctcccgttcgatgataggaatcttgcagttctctatcaaaagatattgaagggggatgttcagatacccaaatggttatcacctggtgctcaaaacttgataagaagggttctcgatcccaatcctctcactagaataaacatgacagacatcaagtcagatgaatggttcaagcaggattactttcctgcaaaacccgacgaagaagaggaagatataaatgttgataccaaagatttgtcaataaatgaagtgccatctgaaggggagaagagtccagatttgcggcactcacccacccttatcaatgcctttcagttgattggaatgtcctcatgtctagacctctctggcttctttgagaaagaggatgtgtctgagaggaagatcagatttacttccaaccactctgcaaaagatttgcttgagaggattgaagaaattgtaacagagatgggatatggtgtccagaagaaaaatggaaggttaaaggtgatgcaagagaacaaggggcagagaaatctgggtagtctctcagttgcagcagaggtgtttgagttaagccccacattatacgtagttgaattaagaaaatcatacggagatccttctgcatatagacagttgtgtaaaaagctatcaaatgatttaggtgttccatctagccaagaattgttggccagcgaggtattgaagtccagttctttgcagagtcaaacggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

463

Amino Acids

51.83

Weight (kDa)

6.78

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccB1I	GGYRCC	2 cut(s)	134, 611
AciI	CCGC	2 cut(s)	318, 952
AclWI	GGATC	3 cut(s)	577, 776, 1265
AcoI	YGGCCR	2 cut(s)	139, 1344
AcuI	CTGAAG	2 cut(s)	387, 948
AcyI	GRCGYC	2 cut(s)	129, 612
AdeI	CACNNNGTG	1 cut(s)	752
AfiI	CCNNNNNNNGG	2 cut(s)	448, 929
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	6 cut(s)	229, 715, 838, 1103, 1250, 1360
AhdI	GACNNNNNGTC	1 cut(s)	820
AjnI	CCWGG	1 cut(s)	748
AluBI	AGCT	6 cut(s)	232, 356, 379, 408, 448, 1303
AluI	AGCT	6 cut(s)	232, 356, 379, 408, 448, 1303
Alw21I	GWGCWC	1 cut(s)	757
Alw26I	GTCTC	1 cut(s)	1202
AlwI	GGATC	3 cut(s)	577, 776, 1265
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	3 cut(s)	139, 499, 1344
ApeKI	GCWGC	2 cut(s)	541, 1208
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	2 cut(s)	298, 439
AsuHPI	GGTGA	4 cut(s)	16, 738, 951, 1171
AvaII	GGWCC	2 cut(s)	298, 439
BalI	TGGCCA	1 cut(s)	1346
BanI	GGYRCC	2 cut(s)	134, 611
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	757
BbvI	GCAGC	2 cut(s)	528, 1220
BccI	CCATC	7 cut(s)	392, 441, 527, 599, 931, 1114, 1333
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	750
BcoDI	GTCTC	1 cut(s)	1202
BfaI	CTAG	5 cut(s)	164, 302, 798, 1007, 1329
BfmI	CTRYAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	615
BfrI	CTTAAG	1 cut(s)	443
BisI	GCNGC	3 cut(s)	542, 953, 1209
BlsI	GCNGC	3 cut(s)	543, 954, 1210
Bme1390I	CCNGG	1 cut(s)	750
Bme18I	GGWCC	2 cut(s)	298, 439
BmeRI	GACNNNNNGTC	1 cut(s)	820
BmgT120I	GGNCC	2 cut(s)	298, 439
BmiI	GGNNCC	3 cut(s)	136, 440, 613
BmrFI	CCNGG	1 cut(s)	750
BmrI	ACTGGG	2 cut(s)	71, 669
BmsI	GCATC	1 cut(s)	1152
BmuI	ACTGGG	2 cut(s)	71, 669
BpmI	CTGGAG	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	1112
BsaAI	YACGTR	1 cut(s)	1243
BsaBI	GATNNNNATC	2 cut(s)	684, 786
BsaHI	GRCGYC	2 cut(s)	129, 612
BsaJI	CCNNGG	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 929
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	4 cut(s)	66, 319, 664, 1365
Bse8I	GATNNNNATC	2 cut(s)	684, 786
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	3 cut(s)	241, 727, 1042
BseJI	GATNNNNATC	2 cut(s)	684, 786
BseLI	CCNNNNNNNGG	2 cut(s)	448, 929
BseMII	CTCAG	3 cut(s)	570, 1035, 1215
BseNI	ACTGG	4 cut(s)	66, 319, 664, 1365
BseXI	GCAGC	2 cut(s)	528, 1220
BseYI	CCCAGC	1 cut(s)	516
BshFI	GGCC	3 cut(s)	141, 501, 1346
BshNI	GGYRCC	2 cut(s)	134, 611
BsiHKAI	GWGCWC	1 cut(s)	757
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	448, 929
BsmAI	GTCTC	1 cut(s)	1202
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	3 cut(s)	141, 501, 1346
Bsp1286I	GDGCHC	1 cut(s)	757
Bsp143I	GATC	4 cut(s)	582, 781, 1053, 1270
BspACI	CCGC	2 cut(s)	318, 952
BspANI	GGCC	3 cut(s)	141, 501, 1346
BspCNI	CTCAG	3 cut(s)	571, 1036, 1214
BspLI	GGNNCC	3 cut(s)	136, 440, 613
BspPI	GGATC	3 cut(s)	577, 776, 1265
BspQI	GCTCTTC	2 cut(s)	23, 346
BspT107I	GGYRCC	2 cut(s)	134, 611
BspTI	CTTAAG	1 cut(s)	443
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	4 cut(s)	66, 319, 664, 1365
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	4 cut(s)	582, 781, 1053, 1270
BssNI	GRCGYC	2 cut(s)	129, 612
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	421
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	3 cut(s)	44, 390, 1290
Bst6I	CTCTTC	6 cut(s)	18, 23, 167, 346, 867, 932
BstACI	GRCGYC	2 cut(s)	129, 612
BstAFI	CTTAAG	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	1243
BstC8I	GCNNGC	2 cut(s)	277, 1348
BstDEI	CTNAG	5 cut(s)	123, 503, 579, 1044, 1201
BstF5I	GGATG	3 cut(s)	241, 727, 1042
BstH2I	RGCGCY	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	4 cut(s)	585, 784, 1056, 1273
BstMAI	GTCTC	1 cut(s)	1202
BstMBI	GATC	4 cut(s)	582, 781, 1053, 1270
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	748
BstSFI	CTRYAG	1 cut(s)	357
BstSNI	TACGTA	1 cut(s)	1243
BstV1I	GCAGC	2 cut(s)	528, 1220
BstX2I	RGATCY	2 cut(s)	582, 1270
BstYI	RGATCY	2 cut(s)	582, 1270
BsuRI	GGCC	3 cut(s)	141, 501, 1346
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	241, 727, 1042
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	40, 49
Cac8I	GCNNGC	2 cut(s)	277, 1348
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	1 cut(s)	614
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	298, 439
CsiI	ACCWGGT	1 cut(s)	748
CviAII	CATG	4 cut(s)	295, 630, 808, 1002
DdeI	CTNAG	5 cut(s)	123, 503, 579, 1044, 1201
DinI	GGCGCC	1 cut(s)	613
DpnI	GATC	4 cut(s)	584, 783, 1055, 1272
DpnII	GATC	4 cut(s)	582, 781, 1053, 1270
DraIII	CACNNNGTG	1 cut(s)	752
DriI	GACNNNNNGTC	1 cut(s)	820
EaeI	YGGCCR	2 cut(s)	139, 1344
Eam1104I	CTCTTC	6 cut(s)	18, 23, 167, 346, 867, 932
Eam1105I	GACNNNNNGTC	1 cut(s)	820
EarI	CTCTTC	6 cut(s)	18, 23, 167, 346, 867, 932
Eco105I	TACGTA	1 cut(s)	1243
Eco130I	CCWWGG	1 cut(s)	421
Eco32I	GATATC	1 cut(s)	489
Eco47I	GGWCC	2 cut(s)	298, 439
Eco57I	CTGAAG	2 cut(s)	387, 948
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	748
EcoRV	GATATC	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	421
EgeI	GGCGCC	1 cut(s)	613
EheI	GGCGCC	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	4 cut(s)	298, 633, 811, 1005
FalI	AAGNNNNNCTT	2 cut(s)	1074, 1106
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	4 cut(s)	294, 629, 807, 1001
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	3 cut(s)	542, 953, 1209
FokI	GGATG	3 cut(s)	228, 734, 1049
Fsp4HI	GCNGC	3 cut(s)	542, 953, 1209
FspBI	CTAG	5 cut(s)	164, 302, 798, 1007, 1329
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	3 cut(s)	542, 953, 1209
GsaI	CCCAGC	1 cut(s)	520
GsuI	CTGGAG	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	141, 501, 1346
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	614
Hin1I	GRCGYC	2 cut(s)	129, 612
Hin1II	CATG	4 cut(s)	298, 633, 811, 1005
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HindIII	AAGCTT	2 cut(s)	230, 377
HinfI	GANTC	7 cut(s)	85, 160, 362, 467, 685, 940, 1378
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	4 cut(s)	16, 738, 951, 1171
Hpy188I	TCNGA	9 cut(s)	257, 367, 493, 619, 729, 826, 928, 1045, 1058
Hpy188III	TCNNGA	7 cut(s)	164, 437, 578, 779, 944, 1007, 1135
Hpy99I	CGWCG	3 cut(s)	134, 254, 869
HpyAV	CCTTC	6 cut(s)	362, 709, 765, 923, 1143, 1284
HpyCH4III	ACNGT	3 cut(s)	44, 390, 1290
HpyCH4IV	ACGT	4 cut(s)	129, 249, 570, 1242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	5 cut(s)	123, 503, 579, 1044, 1201
HpySE526I	ACGT	4 cut(s)	129, 249, 570, 1242
Hsp92I	GRCGYC	2 cut(s)	129, 612
Hsp92II	CATG	4 cut(s)	298, 633, 811, 1005
HspAI	GCGC	1 cut(s)	612
KasI	GGCGCC	1 cut(s)	611
Kzo9I	GATC	4 cut(s)	582, 781, 1053, 1270
LguI	GCTCTTC	2 cut(s)	23, 346
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	2 cut(s)	528, 1220
LweI	GCATC	1 cut(s)	1152
MabI	ACCWGGT	1 cut(s)	748
MaeI	CTAG	5 cut(s)	164, 302, 798, 1007, 1329
MaeII	ACGT	4 cut(s)	129, 249, 570, 1242
MaeIII	GTNAC	2 cut(s)	310, 1111
MalI	GATC	4 cut(s)	584, 783, 1055, 1272
MboI	GATC	4 cut(s)	582, 781, 1053, 1270
MflI	RGATCY	2 cut(s)	582, 1270
MhlI	GDGCHC	1 cut(s)	757
MlsI	TGGCCA	1 cut(s)	1346
MluCI	AATT	9 cut(s)	100, 177, 323, 336, 393, 565, 1107, 1250, 1337
MluNI	TGGCCA	1 cut(s)	1346
Mly113I	GGCGCC	1 cut(s)	612
MlyI	GAGTC	3 cut(s)	79, 949, 1387
MmeI	TCCRAC	2 cut(s)	409, 1092
Mox20I	TGGCCA	1 cut(s)	1346
MscI	TGGCCA	1 cut(s)	1346
MseI	TTAA	8 cut(s)	156, 180, 207, 392, 444, 1154, 1226, 1253
Msp20I	TGGCCA	1 cut(s)	1346
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	1 cut(s)	105
NarI	GGCGCC	1 cut(s)	612
NdeII	GATC	4 cut(s)	582, 781, 1053, 1270
NlaIII	CATG	4 cut(s)	298, 633, 811, 1005
NlaIV	GGNNCC	3 cut(s)	136, 440, 613
NmeAIII	GCCGAG	1 cut(s)	69
PciSI	GCTCTTC	2 cut(s)	23, 346
PctI	GAATGC	1 cut(s)	60
PfeI	GAWTC	4 cut(s)	160, 362, 467, 685
PkrI	GCNGC	3 cut(s)	543, 954, 1210
PleI	GAGTC	3 cut(s)	79, 948, 1386
PluTI	GGCGCC	1 cut(s)	615
PpsI	GAGTC	3 cut(s)	79, 948, 1386
Ppu21I	YACGTR	1 cut(s)	1243
PpuMI	RGGWCCY	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	748
PspFI	CCCAGC	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	3 cut(s)	136, 440, 613
PspPI	GGNCC	2 cut(s)	298, 439
PspPPI	RGGWCCY	1 cut(s)	439
PsrI	GAACNNNNNNTAC	2 cut(s)	656, 688
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	2 cut(s)	582, 1270
SapI	GCTCTTC	2 cut(s)	23, 346
SaqAI	TTAA	8 cut(s)	156, 180, 207, 392, 444, 1154, 1226, 1253
SatI	GCNGC	3 cut(s)	542, 953, 1209
Sau3AI	GATC	4 cut(s)	582, 781, 1053, 1270
Sau96I	GGNCC	2 cut(s)	298, 439
SchI	GAGTC	3 cut(s)	79, 949, 1387
ScrFI	CCNGG	1 cut(s)	750
SduI	GDGCHC	1 cut(s)	757
SexAI	ACCWGGT	1 cut(s)	748
SfaNI	GCATC	1 cut(s)	1152
SfcI	CTRYAG	1 cut(s)	357
SfoI	GGCGCC	1 cut(s)	613
SinI	GGWCC	2 cut(s)	298, 439
SmlI	CTYRAG	2 cut(s)	443, 1091
SmoI	CTYRAG	2 cut(s)	443, 1091
SnaBI	TACGTA	1 cut(s)	1243
Sse9I	AATT	9 cut(s)	100, 177, 323, 336, 393, 565, 1107, 1250, 1337
SsiI	CCGC	2 cut(s)	318, 952
SspDI	GGCGCC	1 cut(s)	611
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	5 cut(s)	164, 302, 798, 1007, 1329
StyD4I	CCNGG	1 cut(s)	748
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	3 cut(s)	44, 390, 1290
TaiI	ACGT	4 cut(s)	132, 252, 573, 1245
TaqI	TCGA	2 cut(s)	675, 780
TasI	AATT	9 cut(s)	100, 177, 323, 336, 393, 565, 1107, 1250, 1337
TauI	GCSGC	1 cut(s)	955
TfiI	GAWTC	4 cut(s)	160, 362, 467, 685
Tru1I	TTAA	8 cut(s)	156, 180, 207, 392, 444, 1154, 1226, 1253
Tru9I	TTAA	8 cut(s)	156, 180, 207, 392, 444, 1154, 1226, 1253
TscAI	CASTG	2 cut(s)	40, 49
TseI	GCWGC	2 cut(s)	541, 1208
TspDTI	ATGAA	2 cut(s)	843, 930
TspGWI	ACGGA	1 cut(s)	1281
TspRI	CASTG	2 cut(s)	40, 49
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	2 cut(s)	298, 439
XbaI	TCTAGA	2 cut(s)	163, 1006
XcmI	CCANNNNNNNNNTGG	2 cut(s)	292, 1142
XspI	CTAG	5 cut(s)	164, 302, 798, 1007, 1329
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.