Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8240981.1

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 728

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8240981.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 727 bp

atgcatatggtgatcacacagaaaggtaatagagattatagtaaaaagagaatacaagtgggaaaatacgagttgggaaagactctgggagagggcagtttcggcaaagtcaagtttgctacgaacgtggagtcaggccaaccctttgcggttaagattctggagaggaaaataatcattgacctaaacatggccaacaagataacaagggagattgaaactttgaagcttctcaaacatccaaacgtcgtcagattacacgagattgtggcgagtaaaacccagatttgtatggtcctagaatacgttaaagggggagatttgttcgacaaaatccgtcataacggaagggtcacagaagccaaaggcaggaagattttccaacagttaattgatggcgttagctactgccacaacaaaggcgtttaccatcgggatcttaagctggagaacattctcctagacgaggaaggaaacataaagatatgtgactttggcctcagcgccttgccccagcatttaaaaaaagatgggttactgcatacaatttgtggaacccctaactatgttgctcctgagattctcattaatcgggggtacaatggcgccaccgccgatacgtggtcttgcggtgtgatcttgtttgccattctttcggggttctgtccttttgacgataaaaatcttgcagttctttatcacaagatatataaagggaatttcaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

242

Amino Acids

27.3

Weight (kDa)

9.31

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	605
AciI	CCGC	3 cut(s)	149, 612, 630
AclWI	GGATC	1 cut(s)	444
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	718
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	4 cut(s)	190, 369, 466, 621
AflII	CTTAAG	1 cut(s)	440
AgsI	TTSAA	3 cut(s)	218, 226, 724
AluBI	AGCT	3 cut(s)	229, 405, 445
AluI	AGCT	3 cut(s)	229, 405, 445
AlwI	GGATC	1 cut(s)	444
AoxI	GGCC	3 cut(s)	136, 192, 496
ApoI	RAATTY	1 cut(s)	718
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AseI	ATTAAT	1 cut(s)	588
Asp700I	GAANNNNTTC	1 cut(s)	377
AspLEI	GCGC	2 cut(s)	506, 608
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	605
BauI	CACGAG	1 cut(s)	260
BbvCI	CCTCAGC	1 cut(s)	500
BccI	CCATC	3 cut(s)	389, 438, 524
BclI	TGATCA	1 cut(s)	12
BfaI	CTAG	2 cut(s)	299, 461
BfoI	RGCGCY	2 cut(s)	507, 609
BfrI	CTTAAG	1 cut(s)	440
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	556, 607
BpmI	CTGGAG	2 cut(s)	182, 467
Bpu10I	CCTNAGC	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	681
BsaHI	GRCGYC	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 369, 466, 621
Bse8I	GATNNNNATC	1 cut(s)	681
BseGI	GGATG	1 cut(s)	238
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	4 cut(s)	190, 369, 466, 621
BseMII	CTCAG	2 cut(s)	514, 567
BseYI	CCCAGC	1 cut(s)	513
BshFI	GGCC	3 cut(s)	138, 194, 498
BshNI	GGYRCC	1 cut(s)	605
BslI	CCNNNNNNNGG	4 cut(s)	190, 369, 466, 621
BsnI	GGCC	3 cut(s)	138, 194, 498
Bsp143I	GATC	3 cut(s)	12, 436, 636
BspACI	CCGC	3 cut(s)	149, 612, 630
BspANI	GGCC	3 cut(s)	138, 194, 498
BspCNI	CTCAG	2 cut(s)	513, 568
BspLI	GGNNCC	2 cut(s)	556, 607
BspPI	GGATC	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	605
BspTI	CTTAAG	1 cut(s)	440
BssMI	GATC	3 cut(s)	12, 436, 636
BssNI	GRCGYC	1 cut(s)	606
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	606
BstAFI	CTTAAG	1 cut(s)	440
BstBAI	YACGTR	1 cut(s)	621
BstDEI	CTNAG	2 cut(s)	500, 576
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	238
BstH2I	RGCGCY	2 cut(s)	507, 609
BstHHI	GCGC	2 cut(s)	506, 608
BstKTI	GATC	3 cut(s)	15, 439, 639
BstMBI	GATC	3 cut(s)	12, 436, 636
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	3 cut(s)	138, 194, 498
BtsCI	GGATG	1 cut(s)	238
CfoI	GCGC	2 cut(s)	506, 608
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	598
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	7 cut(s)	138, 194, 229, 362, 405, 445, 498
CviKI_1	RGCY	7 cut(s)	138, 194, 229, 362, 405, 445, 498
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	2 cut(s)	500, 576
DinI	GGCGCC	1 cut(s)	607
DpnI	GATC	3 cut(s)	14, 438, 638
DpnII	GATC	3 cut(s)	12, 436, 636
DraI	TTTAAA	1 cut(s)	522
EaeI	YGGCCR	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	295
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	607
EheI	GGCGCC	1 cut(s)	607
FaeI	CATG	1 cut(s)	193
FatI	CATG	1 cut(s)	189
FauNDI	CATATG	1 cut(s)	6
FbaI	TGATCA	1 cut(s)	12
FokI	GGATG	1 cut(s)	225
FspBI	CTAG	2 cut(s)	299, 461
GlaI	GCGC	2 cut(s)	505, 607
GsaI	CCCAGC	1 cut(s)	517
GsuI	CTGGAG	2 cut(s)	182, 467
HaeII	RGCGCY	2 cut(s)	507, 609
HaeIII	GGCC	3 cut(s)	138, 194, 498
HhaI	GCGC	2 cut(s)	506, 608
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	2 cut(s)	504, 606
HinP1I	GCGC	2 cut(s)	504, 606
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	4 cut(s)	82, 131, 157, 580
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	3 cut(s)	161, 434, 575
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	342, 464
HpyCH4III	ACNGT	1 cut(s)	387
HpyCH4IV	ACGT	4 cut(s)	126, 246, 306, 620
HpyCH4V	TGCA	3 cut(s)	4, 541, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	500, 576
HpySE526I	ACGT	4 cut(s)	126, 246, 306, 620
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	2 cut(s)	504, 606
KasI	GGCGCC	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 436, 636
LmnI	GCTCC	1 cut(s)	577
LpnPI	CCDG	8 cut(s)	71, 120, 146, 296, 355, 431, 527, 588
MaeI	CTAG	2 cut(s)	299, 461
MaeII	ACGT	4 cut(s)	126, 246, 306, 620
MaeIII	GTNAC	3 cut(s)	352, 488, 534
MalI	GATC	3 cut(s)	14, 438, 638
MboI	GATC	3 cut(s)	12, 436, 636
MboII	GAAGA	1 cut(s)	385
MflI	RGATCY	1 cut(s)	436
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	3 cut(s)	390, 546, 718
MluNI	TGGCCA	1 cut(s)	194
Mly113I	GGCGCC	1 cut(s)	606
MlyI	GAGTC	2 cut(s)	76, 140
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	4 cut(s)	85, 159, 460, 509
Mox20I	TGGCCA	1 cut(s)	194
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	6 cut(s)	153, 309, 389, 441, 521, 588
Msp20I	TGGCCA	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	102
NarI	GGCGCC	1 cut(s)	606
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	3 cut(s)	12, 436, 636
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	556, 607
NmuCI	GTSAC	2 cut(s)	352, 488
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	157, 580
PleI	GAGTC	2 cut(s)	76, 139
PluTI	GGCGCC	1 cut(s)	609
PpsI	GAGTC	2 cut(s)	76, 139
Ppu21I	YACGTR	1 cut(s)	621
PshBI	ATTAAT	1 cut(s)	588
PspFI	CCCAGC	1 cut(s)	513
PspN4I	GGNNCC	2 cut(s)	556, 607
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
SaqAI	TTAA	6 cut(s)	153, 309, 389, 441, 521, 588
Sau3AI	GATC	3 cut(s)	12, 436, 636
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	2 cut(s)	76, 140
SetI	ASST	9 cut(s)	28, 129, 186, 231, 249, 309, 407, 447, 623
SfoI	GGCGCC	1 cut(s)	607
SinI	GGWCC	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	3 cut(s)	390, 546, 718
SsiI	CCGC	3 cut(s)	149, 612, 630
SspDI	GGCGCC	1 cut(s)	605
SspMI	CTAG	2 cut(s)	299, 461
TaaI	ACNGT	1 cut(s)	387
TaiI	ACGT	4 cut(s)	129, 249, 309, 623
TaqI	TCGA	1 cut(s)	327
TasI	AATT	3 cut(s)	390, 546, 718
TfiI	GAWTC	2 cut(s)	157, 580
Tru1I	TTAA	6 cut(s)	153, 309, 389, 441, 521, 588
Tru9I	TTAA	6 cut(s)	153, 309, 389, 441, 521, 588
TseFI	GTSAC	2 cut(s)	352, 488
Tsp45I	GTSAC	2 cut(s)	352, 488
TspGWI	ACGGA	2 cut(s)	326, 360
Vha464I	CTTAAG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	295
VspI	ATTAAT	1 cut(s)	588
XagI	CCTNNNNNAGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	718
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	2 cut(s)	299, 461
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.