Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Forward (+)

37753876 .. 37755882

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0218700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCAGCAACGGTAGCACAAGGACTGACTGTGGATCACATTGCTAGACAATCCAATGACATAAGACGCCTCGCCGATTTCTACATAGAGATATTTGGATTCGAGGAGGTAGAGAGCCCAAAGGCTGGGCCACTCAAGGTGATGTGGCTGATTTTACCCTCAGCTTTTACTATGCACCTTATTGAGTGCAACCCAACTAACCACAGGAGCGGCACATCACTGGTAGCCGACCCGGTTGATATTCCCAGAGGTCACCATATCTGCTTCTCTGTCTCCAATTTTGAAACCTTTGTGCAAACACTTAAGGAAAAGCGAATTCAGACTGCTCATAGGCCAGTTCAATTTAATCCAACTGGCAATAAGAAGATCGACCAGGCAACGGTTTGGAGGTTTCCGACTCCACGGCACCTCGGTGGAGTCCTCGAAATGGTAATGCAGATTGATGTGAAGCAGACAATCAATACATCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

157

Amino Acids

17.68

Weight (kDa)

7.89

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	11 - 112	1.2e-06	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	12 - 114	4.7e-06	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	405
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccBSI	CCGCTC	1 cut(s)	210
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	67
AfiI	CCNNNNNNNGG	3 cut(s)	125, 379, 427
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	284, 341
AjnI	CCWGG	1 cut(s)	372
AleI	CACNNNNGTG	1 cut(s)	411
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	2 cut(s)	128, 332
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	151, 245
BanI	GGYRCC	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	419
BciT130I	CCWGG	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	302
BisI	GCNGC	2 cut(s)	6, 211
BlsI	GCNGC	2 cut(s)	7, 212
Bme1390I	CCNGG	2 cut(s)	233, 374
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	2 cut(s)	233, 374
Bpu10I	CCTNAGC	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	401, 409
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 379, 427
Bse1I	ACTGG	3 cut(s)	225, 335, 358
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	401, 409
BseLI	CCNNNNNNNGG	3 cut(s)	125, 379, 427
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	3 cut(s)	225, 335, 358
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	125
BshFI	GGCC	2 cut(s)	130, 334
BshNI	GGYRCC	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	3 cut(s)	125, 379, 427
BsmAI	GTCTC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	130, 334
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	34, 366
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	2 cut(s)	130, 334
BspCNI	CTCAG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	405
BspTI	CTTAAG	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	3 cut(s)	225, 335, 358
BssECI	CCNNGG	2 cut(s)	401, 409
BssMI	GATC	2 cut(s)	34, 366
BssNI	GRCGYC	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	3 cut(s)	13, 31, 382
BstACI	GRCGYC	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	160
BstDSI	CCRYGG	1 cut(s)	401
BstEII	GGTNACC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	37, 369
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	2 cut(s)	34, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	374
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	231, 372
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	130, 334
BtgI	CCRYGG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	75
CviJI	RGCY	7 cut(s)	117, 125, 130, 148, 164, 227, 334
CviKI_1	RGCY	7 cut(s)	117, 125, 130, 148, 164, 227, 334
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	2 cut(s)	36, 368
DpnII	GATC	2 cut(s)	34, 366
Eco24I	GRGCYC	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	119
FaiI	YATR	6 cut(s)	62, 86, 173, 258, 330, 472
Fnu4HI	GCNGC	2 cut(s)	6, 211
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	6, 211
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	2 cut(s)	6, 211
GsaI	CCCAGC	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	130, 334
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	99, 397, 417
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	2 cut(s)	151, 245
Hpy188I	TCNGA	2 cut(s)	321, 396
HpyCH4III	ACNGT	3 cut(s)	13, 31, 382
HpyCH4V	TGCA	4 cut(s)	175, 189, 295, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	160
Hsp92I	GRCGYC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	34, 366
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	9 cut(s)	111, 190, 206, 246, 259, 339, 348, 359, 386
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	2 cut(s)	36, 368
MbiI	CCGCTC	1 cut(s)	210
MboI	GATC	2 cut(s)	34, 366
MboII	GAAGA	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	3 cut(s)	277, 315, 341
MlyI	GAGTC	2 cut(s)	391, 426
MmeI	TCCRAC	2 cut(s)	374, 419
MnlI	CCTC	8 cut(s)	80, 97, 100, 169, 242, 381, 419, 431
MseI	TTAA	2 cut(s)	303, 345
MslI	CAYNNNNRTG	1 cut(s)	411
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	233, 374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	2 cut(s)	34, 366
NlaIV	GGNNCC	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	251
OliI	CACNNNNGTG	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	7, 212
PleI	GAGTC	2 cut(s)	391, 425
PpsI	GAGTC	2 cut(s)	391, 425
Psp6I	CCWGG	1 cut(s)	372
PspEI	GGTNACC	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	303, 345
SatI	GCNGC	2 cut(s)	6, 211
Sau3AI	GATC	2 cut(s)	34, 366
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	2 cut(s)	391, 426
ScrFI	CCNGG	2 cut(s)	233, 374
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	8 cut(s)	111, 141, 166, 180, 253, 290, 392, 411
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	134, 302
SmoI	CTYRAG	2 cut(s)	134, 302
Sse9I	AATT	3 cut(s)	277, 315, 341
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	231, 372
TaaI	ACNGT	3 cut(s)	13, 31, 382
TaqI	TCGA	3 cut(s)	102, 369, 423
TasI	AATT	3 cut(s)	277, 315, 341
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	2 cut(s)	303, 345
Tru9I	TTAA	2 cut(s)	303, 345
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	251
TspRI	CASTG	1 cut(s)	225
Van91I	CCANNNNNTGG	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	315
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.