Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Reverse (-)

49612086 .. 49615465

Gene Structure 3380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G023860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGTGATGATAAAGAAAGGGGAAGAGAAGAGCAGTGATTACAGTGCAAAGGGAATGCGACTGGGAAAATACGAGTTGGGAAAGACTCTCGGCGAGGGCAATTTCGGCAAAGTCAAGTTTGCTAAGGACGTCGGCACCGGCCAACCATTTGCCGTTAAGATTCTAGAGAAGAAGAGAATTAACGACCACAACATCGCCGACCAGATAAAGAGGGAGATTGGCACTTTGAAGCTTCTAAAACATCCAAACGTCGTCCGATTACACGAGTGGCAATTGCTTTGCCTCTTGCAAGATGATAGGAATCTTGCAGTTCTCTATCAAAAGATATTGAAGGGGGATGTTCAGATACCCAAATGGTTATCACCTGGTGCTCAAAACTTGATAAGAAGGGTTCTCGATCCCAATCCTCTCACTAGAATAAACATGACTGACATCAAGTCAGATGAATGGTTCAAGCAGGATTACTTTCCTGCAAAACCCGACGAAGAAGAGGAAGATATAAATGTTGATACCAAAGATTTGTCAATAAATGAAGTGCCATCTGAAGGGGAGAAGAGTCCAGATTTGCGGCACTCACCCACCCTTATCAATGCCTTTCAGTTGATTGGAATGTCCTCATGTCTAGACCTCTCTGGCTTCTTTGAGAAAGAGGATGTGTCTGAGAGGAAGATCAGATTTACTTCCAACCACTCTGCAAAAGATTTGCTTGAGAGGATTGAAGAAATTGTAACAGAGATGGGATATGGTGTCCAGAAGAAAAATGGAAGGTTAAAGGTGATGCAAGAGAACAAGGGGCAGAGAAATCTGGGTAGTCTCTCAGTTGCAGCAGAGGTGTTTGAGTTAAGCCCCACATTATACGTAGTTGAATTAAGAAAATCATACGGAGATCCTTCTGCATATAGACAGTTGTGTAAAAAGCTATCAAATGATTTAGGTGTTCCATCTAGCCAAGAATTGTTGGCCAGCGAGGTATTGAAGTCCAGTTCTTTGCAGAGTCAAACGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

335

Amino Acids

37.84

Weight (kDa)

7.65

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	24 - 90	1.7e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	25 - 90	2.1e-06	Protein tyrosine and serine/threonine kinase
NAF	PF03822	193 - 252	2.1e-20	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	1 cut(s)	568
AclWI	GGATC	2 cut(s)	392, 881
AcoI	YGGCCR	2 cut(s)	139, 960
AcuI	CTGAAG	1 cut(s)	564
AcyI	GRCGYC	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	545
AgsI	TTSAA	6 cut(s)	229, 331, 454, 719, 866, 976
AhdI	GACNNNNNGTC	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	2 cut(s)	232, 919
AluI	AGCT	2 cut(s)	232, 919
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	818
AlwI	GGATC	2 cut(s)	392, 881
AoxI	GGCC	2 cut(s)	139, 960
ApeKI	GCWGC	1 cut(s)	824
AsuHPI	GGTGA	4 cut(s)	16, 354, 567, 787
BalI	TGGCCA	1 cut(s)	962
BanI	GGYRCC	1 cut(s)	134
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	836
BccI	CCATC	3 cut(s)	547, 730, 949
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	818
BfaI	CTAG	4 cut(s)	164, 414, 623, 945
BisI	GCNGC	2 cut(s)	569, 825
BlsI	GCNGC	2 cut(s)	570, 826
Bme1390I	CCNGG	1 cut(s)	366
BmeRI	GACNNNNNGTC	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	768
BmuI	ACTGGG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	728
BsaAI	YACGTR	1 cut(s)	859
BsaBI	GATNNNNATC	2 cut(s)	300, 402
BsaHI	GRCGYC	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	66, 981
Bse8I	GATNNNNATC	2 cut(s)	300, 402
BseBI	CCWGG	1 cut(s)	366
BseGI	GGATG	3 cut(s)	241, 343, 658
BseJI	GATNNNNATC	2 cut(s)	300, 402
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMII	CTCAG	2 cut(s)	651, 831
BseNI	ACTGG	2 cut(s)	66, 981
BseXI	GCAGC	1 cut(s)	836
BshFI	GGCC	2 cut(s)	141, 962
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmAI	GTCTC	1 cut(s)	818
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	141, 962
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	397, 669, 886
BspACI	CCGC	1 cut(s)	568
BspANI	GGCC	2 cut(s)	141, 962
BspCNI	CTCAG	2 cut(s)	652, 830
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	392, 881
BspQI	GCTCTTC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	66, 981
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	3 cut(s)	397, 669, 886
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	44, 906
Bst6I	CTCTTC	5 cut(s)	18, 23, 167, 483, 548
BstACI	GRCGYC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	859
BstC8I	GCNNGC	1 cut(s)	964
BstDEI	CTNAG	3 cut(s)	123, 660, 817
BstF5I	GGATG	3 cut(s)	241, 343, 658
BstKTI	GATC	3 cut(s)	400, 672, 889
BstMAI	GTCTC	1 cut(s)	818
BstMBI	GATC	3 cut(s)	397, 669, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstSNI	TACGTA	1 cut(s)	859
BstV1I	GCAGC	1 cut(s)	836
BstX2I	RGATCY	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	886
BsuRI	GGCC	2 cut(s)	141, 962
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	241, 343, 658
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	40, 49
Cac8I	GCNNGC	1 cut(s)	964
Cfr10I	RCCGGY	1 cut(s)	137
CsiI	ACCWGGT	1 cut(s)	364
CviAII	CATG	2 cut(s)	424, 618
CviJI	RGCY	7 cut(s)	141, 232, 636, 846, 919, 948, 962
CviKI_1	RGCY	7 cut(s)	141, 232, 636, 846, 919, 948, 962
DdeI	CTNAG	3 cut(s)	123, 660, 817
DpnI	GATC	3 cut(s)	399, 671, 888
DpnII	GATC	3 cut(s)	397, 669, 886
DraIII	CACNNNGTG	1 cut(s)	368
DriI	GACNNNNNGTC	1 cut(s)	436
EaeI	YGGCCR	2 cut(s)	139, 960
Eam1104I	CTCTTC	5 cut(s)	18, 23, 167, 483, 548
Eam1105I	GACNNNNNGTC	1 cut(s)	436
EarI	CTCTTC	5 cut(s)	18, 23, 167, 483, 548
Eco105I	TACGTA	1 cut(s)	859
Eco57I	CTGAAG	1 cut(s)	564
EcoRII	CCWGG	1 cut(s)	364
FaeI	CATG	2 cut(s)	427, 621
FaiI	YATR	9 cut(s)	425, 500, 619, 744, 856, 880, 898, 900, 1006
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FatI	CATG	2 cut(s)	423, 617
Fnu4HI	GCNGC	2 cut(s)	569, 825
FokI	GGATG	3 cut(s)	228, 350, 665
Fsp4HI	GCNGC	2 cut(s)	569, 825
FspBI	CTAG	4 cut(s)	164, 414, 623, 945
GluI	GCNGC	2 cut(s)	569, 825
HaeIII	GGCC	2 cut(s)	141, 962
HapII	CCGG	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	427, 621
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	5 cut(s)	85, 160, 301, 556, 994
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	4 cut(s)	16, 354, 567, 787
Hpy188I	TCNGA	6 cut(s)	257, 345, 442, 544, 661, 674
Hpy188III	TCNNGA	5 cut(s)	164, 395, 560, 623, 751
Hpy99I	CGWCG	3 cut(s)	134, 254, 485
HpyAV	CCTTC	5 cut(s)	325, 381, 539, 759, 900
HpyCH4III	ACNGT	2 cut(s)	44, 906
HpyCH4IV	ACGT	3 cut(s)	129, 249, 858
HpyCH4V	TGCA	9 cut(s)	47, 289, 308, 473, 695, 781, 824, 896, 991
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	3 cut(s)	123, 660, 817
HpySE526I	ACGT	3 cut(s)	129, 249, 858
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	427, 621
Kzo9I	GATC	3 cut(s)	397, 669, 886
LguI	GCTCTTC	1 cut(s)	23
Lsp1109I	GCAGC	1 cut(s)	836
LweI	GCATC	1 cut(s)	768
MabI	ACCWGGT	1 cut(s)	364
MaeI	CTAG	4 cut(s)	164, 414, 623, 945
MaeII	ACGT	3 cut(s)	129, 249, 858
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	3 cut(s)	399, 671, 888
MboI	GATC	3 cut(s)	397, 669, 886
MfeI	CAATTG	1 cut(s)	272
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	1 cut(s)	373
MlsI	TGGCCA	1 cut(s)	962
MluCI	AATT	6 cut(s)	100, 177, 272, 723, 866, 953
MluNI	TGGCCA	1 cut(s)	962
MlyI	GAGTC	3 cut(s)	79, 565, 1003
MmeI	TCCRAC	1 cut(s)	708
Mox20I	TGGCCA	1 cut(s)	962
MscI	TGGCCA	1 cut(s)	962
MseI	TTAA	5 cut(s)	156, 180, 770, 842, 869
Msp20I	TGGCCA	1 cut(s)	962
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	105
NdeII	GATC	3 cut(s)	397, 669, 886
NlaIII	CATG	2 cut(s)	427, 621
NlaIV	GGNNCC	1 cut(s)	136
NmeAIII	GCCGAG	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	160, 301
PkrI	GCNGC	2 cut(s)	570, 826
PleI	GAGTC	3 cut(s)	79, 564, 1002
PpsI	GAGTC	3 cut(s)	79, 564, 1002
Ppu21I	YACGTR	1 cut(s)	859
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	886
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	5 cut(s)	156, 180, 770, 842, 869
SatI	GCNGC	2 cut(s)	569, 825
Sau3AI	GATC	3 cut(s)	397, 669, 886
SchI	GAGTC	3 cut(s)	79, 565, 1003
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	373
SexAI	ACCWGGT	1 cut(s)	364
SfaNI	GCATC	1 cut(s)	768
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
SnaBI	TACGTA	1 cut(s)	859
Sse9I	AATT	6 cut(s)	100, 177, 272, 723, 866, 953
SsiI	CCGC	1 cut(s)	568
SspMI	CTAG	4 cut(s)	164, 414, 623, 945
StyD4I	CCNGG	1 cut(s)	364
TaaI	ACNGT	2 cut(s)	44, 906
TaiI	ACGT	3 cut(s)	132, 252, 861
TaqI	TCGA	1 cut(s)	396
TasI	AATT	6 cut(s)	100, 177, 272, 723, 866, 953
TauI	GCSGC	1 cut(s)	571
TfiI	GAWTC	2 cut(s)	160, 301
Tru1I	TTAA	5 cut(s)	156, 180, 770, 842, 869
Tru9I	TTAA	5 cut(s)	156, 180, 770, 842, 869
TscAI	CASTG	2 cut(s)	40, 49
TseI	GCWGC	1 cut(s)	824
TspDTI	ATGAA	2 cut(s)	459, 546
TspGWI	ACGGA	1 cut(s)	897
TspRI	CASTG	2 cut(s)	40, 49
XbaI	TCTAGA	2 cut(s)	163, 622
XcmI	CCANNNNNNNNNTGG	1 cut(s)	758
XspI	CTAG	4 cut(s)	164, 414, 623, 945
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.