Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Forward (+)

14732720 .. 14737117

Gene Structure 4398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007224

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGATAAAGAAGAGGGAAGAGAAGAGCAGTGATTACAGTGAAAAGGGAATGCGACTGGGAAAATACGAGTTGGGAAAGACTCTCGGCGAGGGCAATTTCGGCAAAGTCAAGTTTGCTAAGGACGTCGGCACCGGCCAACCATTTGCCGTTAAGATTCTAGAGAAGAAGAGAATCAACGACCACAACATCGCCGACCAGATAAAGAGGGAGATTGGCACTTTGAAGCTTCTAAAACATCCAAACGTCGTCCGATTACACGAGGTTGTGGCAAGCAAAACCAAGATTTACATGGTCCTAGAATATGTTACCGGCGGGGAATTGTTTGACAAAATTATCCTCGCTAATAGAGGGTATGATGGTGGCGCCTCTGATATATGGTCATGTGGTGTCATCTTATATGTCATTCTAACGGGTTATCTCCCATTCGATGATAGGAATCTTGCAGTTCTCTATCAAAAGATATTGAAGGGGGATGTTCAGATACCCAAATGGTTATCGCCTGGTGCTCAAAACTTGATAAGAAGGGTTCTCGATCCCAATCCTCTCACTAGAATAAACATGACAGACATCAAGTCAGATGAATGGTTCAAGCAGGGTTACTTTCCTGCAAAACCCGACGAAGAAGAGGAAGATATAAATGTTGATACCAAAGATTTATTACTAAATGAAACGCCATCTGAAGGGGAGAAGAGTCCAGATTTGCGGCACTCACCCACCCTTATCAATGCCTTTCAGTTGATTGGAATGTCCTCATGTCTAGACCTCTCTGGCTTCTTTGAGAAAGAGGATGTGTCTGAGAGGAAGATCAGATTTACTTCCAACCACTCTGCAAAAGATTTGCTTGAGAGGATTGAAGAAATTGTAACAGAGATGGGATATGGTGTCCAGAAGAAAAATGGAACGTTAAAGGTGATGCAAGAGAACAAGGGGCAGAGAAATCTGGGTAGTCTCTCAGTTGCAGCAGAGGTGTTTGAGTTAAGCCCGACATTATACGTAGTTGAATTAAGAAAATCATACGGAGATCCTTCTGCATATAGACAGTTGTGTAAAAAGCTATCAAATGATTTAGGTGTTCCATCTAGCCAAGAATTGTTGGCCAGCGAGAAACTGAAAGATCTGACCATCATCCCCAAGTGGACTGATCATGCCGATATGCAATGCCAAGATTCATCGTTGAGTCAGAATCAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

398

Amino Acids

44.85

Weight (kDa)

6.64

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 111	2.5e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	23 - 110	5.2e-13	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	113 - 196	6.4e-11	Protein kinase domain
NAF	PF03822	238 - 297	2.7e-20	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	2 cut(s)	128, 362
AciI	CCGC	2 cut(s)	312, 703
AclI	AACGTT	1 cut(s)	902
AclWI	GGATC	2 cut(s)	527, 1016
AcoI	YGGCCR	2 cut(s)	133, 1095
AcuI	CTGAAG	1 cut(s)	699
AcyI	GRCGYC	2 cut(s)	123, 363
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgsI	TTSAA	5 cut(s)	223, 466, 589, 854, 1001
AhdI	GACNNNNNGTC	1 cut(s)	571
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	2 cut(s)	226, 1054
AluI	AGCT	2 cut(s)	226, 1054
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	1 cut(s)	953
AlwI	GGATC	2 cut(s)	527, 1016
AoxI	GGCC	2 cut(s)	133, 1095
ApeKI	GCWGC	1 cut(s)	959
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	702, 922
AvaII	GGWCC	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	1097
BanI	GGYRCC	2 cut(s)	128, 362
BauI	CACGAG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	971
BccI	CCATC	5 cut(s)	350, 682, 865, 1084, 1130
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	501
BclI	TGATCA	1 cut(s)	1141
BcoDI	GTCTC	1 cut(s)	953
BfaI	CTAG	5 cut(s)	158, 296, 549, 758, 1080
BfoI	RGCGCY	1 cut(s)	366
BglII	AGATCT	1 cut(s)	1114
BisI	GCNGC	2 cut(s)	704, 960
BlsI	GCNGC	2 cut(s)	705, 961
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	292
BmeRI	GACNNNNNGTC	1 cut(s)	571
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	130, 364
BmrFI	CCNGG	1 cut(s)	501
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	903
BmuI	ACTGGG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	863
BsaAI	YACGTR	1 cut(s)	994
BsaBI	GATNNNNATC	2 cut(s)	435, 537
BsaHI	GRCGYC	2 cut(s)	123, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse118I	RCCGGY	2 cut(s)	131, 308
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	1163
Bse8I	GATNNNNATC	2 cut(s)	435, 537
BseBI	CCWGG	1 cut(s)	501
BseGI	GGATG	4 cut(s)	235, 478, 793, 1125
BseJI	GATNNNNATC	2 cut(s)	435, 537
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMI	GCAATG	1 cut(s)	1163
BseMII	CTCAG	2 cut(s)	786, 966
BseNI	ACTGG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	971
BshFI	GGCC	2 cut(s)	135, 1097
BshNI	GGYRCC	2 cut(s)	128, 362
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	132, 309
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	1 cut(s)	953
BsmI	GAATGC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	135, 1097
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	5 cut(s)	532, 804, 1021, 1114, 1141
BspACI	CCGC	2 cut(s)	312, 703
BspANI	GGCC	2 cut(s)	135, 1097
BspCNI	CTCAG	2 cut(s)	787, 965
BspLI	GGNNCC	2 cut(s)	130, 364
BspPI	GGATC	2 cut(s)	527, 1016
BspQI	GCTCTTC	1 cut(s)	17
BspT107I	GGYRCC	2 cut(s)	128, 362
BsrDI	GCAATG	1 cut(s)	1163
BsrFI	RCCGGY	2 cut(s)	131, 308
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	2 cut(s)	131, 308
BssMI	GATC	5 cut(s)	532, 804, 1021, 1114, 1141
BssNI	GRCGYC	2 cut(s)	123, 363
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	38, 1041
Bst6I	CTCTTC	6 cut(s)	5, 12, 17, 161, 618, 683
BstACI	GRCGYC	2 cut(s)	123, 363
BstBAI	YACGTR	1 cut(s)	994
BstC8I	GCNNGC	2 cut(s)	271, 1099
BstDEI	CTNAG	3 cut(s)	117, 795, 952
BstF5I	GGATG	4 cut(s)	235, 478, 793, 1125
BstH2I	RGCGCY	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	5 cut(s)	535, 807, 1024, 1117, 1144
BstMAI	GTCTC	1 cut(s)	953
BstMBI	GATC	5 cut(s)	532, 804, 1021, 1114, 1141
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstSNI	TACGTA	1 cut(s)	994
BstV1I	GCAGC	1 cut(s)	971
BstX2I	RGATCY	2 cut(s)	1021, 1114
BstYI	RGATCY	2 cut(s)	1021, 1114
BsuRI	GGCC	2 cut(s)	135, 1097
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	4 cut(s)	235, 478, 793, 1125
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	34, 43
Cac8I	GCNNGC	2 cut(s)	271, 1099
CfoI	GCGC	1 cut(s)	365
Cfr10I	RCCGGY	2 cut(s)	131, 308
Cfr13I	GGNCC	1 cut(s)	292
CviAII	CATG	5 cut(s)	289, 381, 559, 753, 1145
CviJI	RGCY	7 cut(s)	135, 226, 771, 981, 1054, 1083, 1097
CviKI_1	RGCY	7 cut(s)	135, 226, 771, 981, 1054, 1083, 1097
DdeI	CTNAG	3 cut(s)	117, 795, 952
DinI	GGCGCC	1 cut(s)	364
DpnI	GATC	5 cut(s)	534, 806, 1023, 1116, 1143
DpnII	GATC	5 cut(s)	532, 804, 1021, 1114, 1141
DriI	GACNNNNNGTC	1 cut(s)	571
EaeI	YGGCCR	2 cut(s)	133, 1095
Eam1104I	CTCTTC	6 cut(s)	5, 12, 17, 161, 618, 683
Eam1105I	GACNNNNNGTC	1 cut(s)	571
EarI	CTCTTC	6 cut(s)	5, 12, 17, 161, 618, 683
Eco105I	TACGTA	1 cut(s)	994
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	499
EgeI	GGCGCC	1 cut(s)	364
EheI	GGCGCC	1 cut(s)	364
FaeI	CATG	5 cut(s)	292, 384, 562, 756, 1148
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FatI	CATG	5 cut(s)	288, 380, 558, 752, 1144
FauI	CCCGC	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	1141
Fnu4HI	GCNGC	2 cut(s)	704, 960
FokI	GGATG	4 cut(s)	222, 485, 800, 1112
Fsp4HI	GCNGC	2 cut(s)	704, 960
FspBI	CTAG	5 cut(s)	158, 296, 549, 758, 1080
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	2 cut(s)	704, 960
HaeII	RGCGCY	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	135, 1097
HapII	CCGG	2 cut(s)	132, 309
HhaI	GCGC	1 cut(s)	365
Hin1I	GRCGYC	2 cut(s)	123, 363
Hin1II	CATG	5 cut(s)	292, 384, 562, 756, 1148
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	8 cut(s)	79, 154, 171, 436, 691, 1166, 1177, 1183
HpaII	CCGG	2 cut(s)	132, 309
HphI	GGTGA	2 cut(s)	702, 922
Hpy166II	GTNNAC	1 cut(s)	1137
Hpy188I	TCNGA	9 cut(s)	251, 370, 480, 577, 679, 796, 809, 1119, 1182
Hpy188III	TCNNGA	5 cut(s)	158, 530, 695, 758, 886
Hpy8I	GTNNAC	1 cut(s)	1137
Hpy99I	CGWCG	3 cut(s)	128, 248, 620
HpyAV	CCTTC	4 cut(s)	460, 516, 674, 1035
HpyCH4III	ACNGT	2 cut(s)	38, 1041
HpyCH4IV	ACGT	4 cut(s)	123, 243, 902, 993
HpyCH4V	TGCA	7 cut(s)	443, 608, 830, 916, 959, 1031, 1156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	3 cut(s)	117, 795, 952
HpySE526I	ACGT	4 cut(s)	123, 243, 902, 993
Hsp92I	GRCGYC	2 cut(s)	123, 363
Hsp92II	CATG	5 cut(s)	292, 384, 562, 756, 1148
HspAI	GCGC	1 cut(s)	363
KasI	GGCGCC	1 cut(s)	362
Ksp22I	TGATCA	1 cut(s)	1141
Kzo9I	GATC	5 cut(s)	532, 804, 1021, 1114, 1141
LguI	GCTCTTC	1 cut(s)	17
Lsp1109I	GCAGC	1 cut(s)	971
LweI	GCATC	1 cut(s)	903
MaeI	CTAG	5 cut(s)	158, 296, 549, 758, 1080
MaeII	ACGT	4 cut(s)	123, 243, 902, 993
MaeIII	GTNAC	3 cut(s)	304, 596, 862
MalI	GATC	5 cut(s)	534, 806, 1023, 1116, 1143
MboI	GATC	5 cut(s)	532, 804, 1021, 1114, 1141
MflI	RGATCY	2 cut(s)	1021, 1114
MhlI	GDGCHC	1 cut(s)	508
MlsI	TGGCCA	1 cut(s)	1097
MluCI	AATT	6 cut(s)	94, 317, 330, 858, 1001, 1088
MluNI	TGGCCA	1 cut(s)	1097
Mly113I	GGCGCC	1 cut(s)	363
MlyI	GAGTC	3 cut(s)	73, 700, 1186
MmeI	TCCRAC	1 cut(s)	843
Mox20I	TGGCCA	1 cut(s)	1097
MscI	TGGCCA	1 cut(s)	1097
MseI	TTAA	4 cut(s)	150, 905, 977, 1004
Msp20I	TGGCCA	1 cut(s)	1097
MspI	CCGG	2 cut(s)	132, 309
MspR9I	CCNGG	1 cut(s)	501
Mva1269I	GAATGC	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	99
NarI	GGCGCC	1 cut(s)	363
NdeII	GATC	5 cut(s)	532, 804, 1021, 1114, 1141
NlaIII	CATG	5 cut(s)	292, 384, 562, 756, 1148
NlaIV	GGNNCC	2 cut(s)	130, 364
NmeAIII	GCCGAG	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	17
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	5 cut(s)	154, 171, 436, 1166, 1183
PkrI	GCNGC	2 cut(s)	705, 961
PleI	GAGTC	3 cut(s)	73, 699, 1185
PluTI	GGCGCC	1 cut(s)	366
PpsI	GAGTC	3 cut(s)	73, 699, 1185
Ppu21I	YACGTR	1 cut(s)	994
Psp1406I	AACGTT	1 cut(s)	902
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	130, 364
PspPI	GGNCC	1 cut(s)	292
PsuI	RGATCY	2 cut(s)	1021, 1114
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	4 cut(s)	150, 905, 977, 1004
SatI	GCNGC	2 cut(s)	704, 960
Sau3AI	GATC	5 cut(s)	532, 804, 1021, 1114, 1141
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	3 cut(s)	73, 700, 1186
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	1 cut(s)	508
SfaNI	GCATC	1 cut(s)	903
SfoI	GGCGCC	1 cut(s)	364
SinI	GGWCC	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
SnaBI	TACGTA	1 cut(s)	994
Sse9I	AATT	6 cut(s)	94, 317, 330, 858, 1001, 1088
SsiI	CCGC	2 cut(s)	312, 703
SspDI	GGCGCC	1 cut(s)	362
SspMI	CTAG	5 cut(s)	158, 296, 549, 758, 1080
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	2 cut(s)	38, 1041
TaiI	ACGT	4 cut(s)	126, 246, 905, 996
TaqI	TCGA	2 cut(s)	426, 531
TasI	AATT	6 cut(s)	94, 317, 330, 858, 1001, 1088
TauI	GCSGC	1 cut(s)	706
TfiI	GAWTC	5 cut(s)	154, 171, 436, 1166, 1183
Tru1I	TTAA	4 cut(s)	150, 905, 977, 1004
Tru9I	TTAA	4 cut(s)	150, 905, 977, 1004
TscAI	CASTG	2 cut(s)	34, 43
TseI	GCWGC	1 cut(s)	959
TspDTI	ATGAA	3 cut(s)	594, 681, 1158
TspGWI	ACGGA	1 cut(s)	1032
TspRI	CASTG	2 cut(s)	34, 43
VpaK11BI	GGWCC	1 cut(s)	292
XbaI	TCTAGA	2 cut(s)	157, 757
XcmI	CCANNNNNNNNNTGG	2 cut(s)	286, 893
XspI	CTAG	5 cut(s)	158, 296, 549, 758, 1080
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.