Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Forward (+)

72760930 .. 72761961

Gene Structure 1032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCATATGGTGATCACACAGAAAGGTAATAGAGATTATAGTAAAAAGAGAATACAAGTGGGAAAATACGAGTTGGGAAAGACTCTGGGAGAGGGCAGTTTCGGCAAAGTCAAGTTTGCTACTAACGTGGAGTCAGGCCAACCCTTTGCGGTTAAGATTCTGGAGAGGCAGAGAATCATTGATCTAAACATGGCCAACAAGATAACAAGGGAGATTGAAACTTTGAAGCTTCTCAAACATCCAAACGTCGTCAGATTACACGAGATTGTGGCGAGTAAAACCCAGATTTTTATGGTCCTAGAATACGTTGAAGGGGAAGATTTGTTCGACAAAATCCGTCATAACGGAAGGGTCACAGAAGCCGAAGGCAGGAGGCATTTCCAACAGTTAATTGATGGCGTTAGCTATTGCCACAACAAAGGCGTTTACCATCGGGATCTTAAGCTGGAGAACATTCTCCTAGACGAGGAAGGAAACATAAAGATATGTGACTTTGGCCTTAGCGCCTTGCCCCAGCATTTGAAAAAAGATGGGTTGCTGCATACAATTTGTGGAACCCCTAACTATGTTGCTCCTGAGATTCTCATTAATCGGGGGTACAATGGCGCCACCACCGATACATGGTCTTGCGGTGTGATCTTGTTTGCCATTCTTTCGGGGTTCTGTCCTTTTGACGATAAAAATCTTGCGGTTCTTTATCACAAGATATATAAAGGGAATTTCAAAATACCCGATTGGTTATCACCTGGTGCAAAATCCTTGATAAGAAGGATTCTGGATCCGAATCCTGTCACCAGAATAAACATGAGAGGCATAAAGTCAGATGAATGGTTCAACCAGGACTACACTCCTGCAAAACCCGATGAAGACGAAGAAGAAGGAGATATACATGTCGATGATGAAGAAGCTTTAAAGATTCCAGATTTGCATTGCTCGACTGTCAAGGTCCCGGGTTTTCTTCGGGCTCTATTATGTTGTTTTGGGCTTTGTGTTTCAGACTTCCAGTGCAGTGAGTTTATTGACCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

343

Amino Acids

39.02

Weight (kDa)

6.47

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	23 - 278	7.9e-72	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 273	4.7e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	605
AciI	CCGC	3 cut(s)	149, 630, 689
AclWI	GGATC	3 cut(s)	444, 773, 786
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	718
AcyI	GRCGYC	1 cut(s)	606
AdeI	CACNNNGTG	1 cut(s)	749
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	3 cut(s)	369, 466, 621
AflII	CTTAAG	1 cut(s)	440
AflIII	ACRYGT	1 cut(s)	889
AgsI	TTSAA	6 cut(s)	218, 226, 311, 523, 724, 835
AjnI	CCWGG	2 cut(s)	745, 837
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	4 cut(s)	229, 405, 445, 908
AluI	AGCT	4 cut(s)	229, 405, 445, 908
AlwI	GGATC	3 cut(s)	444, 773, 786
Ama87I	CYCGRG	1 cut(s)	949
AoxI	GGCC	3 cut(s)	136, 192, 496
ApeKI	GCWGC	1 cut(s)	538
ApoI	RAATTY	1 cut(s)	718
AseI	ATTAAT	1 cut(s)	588
AspLEI	GCGC	2 cut(s)	506, 608
AspS9I	GGNCC	2 cut(s)	295, 946
AsuC2I	CCSGG	2 cut(s)	950, 951
AsuHPI	GGTGA	3 cut(s)	22, 735, 784
AvaI	CYCGRG	1 cut(s)	949
AvaII	GGWCC	2 cut(s)	295, 946
BalI	TGGCCA	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	778
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	967
BarI	GAAGNNNNNNTAC	2 cut(s)	870, 902
BauI	CACGAG	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	873
BbvI	GCAGC	1 cut(s)	525
BccI	CCATC	3 cut(s)	389, 438, 524
BciT130I	CCWGG	2 cut(s)	747, 839
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	2 cut(s)	950, 951
BfaI	CTAG	2 cut(s)	299, 461
BfoI	RGCGCY	2 cut(s)	507, 609
BfrI	CTTAAG	1 cut(s)	440
BisI	GCNGC	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	540
Bme1390I	CCNGG	4 cut(s)	747, 839, 950, 951
Bme18I	GGWCC	2 cut(s)	295, 946
BmeT110I	CYCGRG	1 cut(s)	949
BmgT120I	GGNCC	2 cut(s)	295, 946
BmiI	GGNNCC	4 cut(s)	556, 607, 780, 948
BmrFI	CCNGG	4 cut(s)	747, 839, 950, 951
BpiI	GAAGAC	1 cut(s)	873
BpmI	CTGGAG	2 cut(s)	182, 467
Bpu10I	CCTNAGC	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	950, 951
BsaBI	GATNNNNATC	2 cut(s)	681, 783
BsaHI	GRCGYC	1 cut(s)	606
BsaJI	CCNNGG	1 cut(s)	949
Bsc4I	CCNNNNNNNGG	3 cut(s)	369, 466, 621
Bse1I	ACTGG	1 cut(s)	1003
Bse3DI	GCAATG	1 cut(s)	928
Bse8I	GATNNNNATC	2 cut(s)	681, 783
BseBI	CCWGG	2 cut(s)	747, 839
BseDI	CCNNGG	1 cut(s)	949
BseGI	GGATG	1 cut(s)	238
BseJI	GATNNNNATC	2 cut(s)	681, 783
BseLI	CCNNNNNNNGG	3 cut(s)	369, 466, 621
BseMI	GCAATG	1 cut(s)	928
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	1 cut(s)	1003
BseXI	GCAGC	1 cut(s)	525
BseYI	CCCAGC	1 cut(s)	513
BsgI	GTGCAG	1 cut(s)	1027
BshFI	GGCC	3 cut(s)	138, 194, 498
BshNI	GGYRCC	1 cut(s)	605
BsiHKCI	CYCGRG	1 cut(s)	949
BsiSI	CCGG	1 cut(s)	950
BslFI	GGGAC	1 cut(s)	932
BslI	CCNNNNNNNGG	3 cut(s)	369, 466, 621
BsmFI	GGGAC	1 cut(s)	932
BsnI	GGCC	3 cut(s)	138, 194, 498
BsoBI	CYCGRG	1 cut(s)	949
Bsp1286I	GDGCHC	1 cut(s)	967
Bsp143I	GATC	5 cut(s)	12, 181, 436, 636, 778
BspACI	CCGC	3 cut(s)	149, 630, 689
BspANI	GGCC	3 cut(s)	138, 194, 498
BspCNI	CTCAG	1 cut(s)	568
BspLI	GGNNCC	4 cut(s)	556, 607, 780, 948
BspPI	GGATC	3 cut(s)	444, 773, 786
BspT107I	GGYRCC	1 cut(s)	605
BspTI	CTTAAG	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	928
BsrI	ACTGG	1 cut(s)	1003
BssECI	CCNNGG	1 cut(s)	949
BssMI	GATC	5 cut(s)	12, 181, 436, 636, 778
BssNI	GRCGYC	1 cut(s)	606
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
Bst2UI	CCWGG	2 cut(s)	747, 839
Bst4CI	ACNGT	2 cut(s)	387, 940
BstACI	GRCGYC	1 cut(s)	606
BstAFI	CTTAAG	1 cut(s)	440
BstDEI	CTNAG	2 cut(s)	500, 576
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	238
BstH2I	RGCGCY	2 cut(s)	507, 609
BstHHI	GCGC	2 cut(s)	506, 608
BstKTI	GATC	5 cut(s)	15, 184, 439, 639, 781
BstMBI	GATC	5 cut(s)	12, 181, 436, 636, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	2 cut(s)	747, 839
BstNSI	RCATGY	1 cut(s)	893
BstSCI	CCNGG	4 cut(s)	745, 837, 948, 949
BstV1I	GCAGC	1 cut(s)	525
BstV2I	GAAGAC	1 cut(s)	873
BstX2I	RGATCY	2 cut(s)	436, 778
BstYI	RGATCY	2 cut(s)	436, 778
BsuRI	GGCC	3 cut(s)	138, 194, 498
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	1015
BtsIMutI	CAGTG	2 cut(s)	1010, 1015
CfoI	GCGC	2 cut(s)	506, 608
Cfr13I	GGNCC	2 cut(s)	295, 946
Cfr9I	CCCGGG	1 cut(s)	949
CsiI	ACCWGGT	1 cut(s)	745
Csp6I	GTAC	1 cut(s)	598
CviAII	CATG	4 cut(s)	190, 621, 805, 890
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	2 cut(s)	500, 576
DinI	GGCGCC	1 cut(s)	607
DpnI	GATC	5 cut(s)	14, 183, 438, 638, 780
DpnII	GATC	5 cut(s)	12, 181, 436, 636, 778
DraI	TTTAAA	1 cut(s)	912
DraIII	CACNNNGTG	1 cut(s)	749
EaeI	YGGCCR	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	967
Eco47I	GGWCC	2 cut(s)	295, 946
Eco88I	CYCGRG	1 cut(s)	949
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	946
EcoRII	CCWGG	2 cut(s)	745, 837
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	967
EgeI	GGCGCC	1 cut(s)	607
EheI	GGCGCC	1 cut(s)	607
FaeI	CATG	4 cut(s)	193, 624, 808, 893
FaqI	GGGAC	1 cut(s)	932
FatI	CATG	4 cut(s)	189, 620, 804, 889
FauNDI	CATATG	1 cut(s)	6
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	539
FokI	GGATG	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	967
Fsp4HI	GCNGC	1 cut(s)	539
FspBI	CTAG	2 cut(s)	299, 461
GlaI	GCGC	2 cut(s)	505, 607
GluI	GCNGC	1 cut(s)	539
GsaI	CCCAGC	1 cut(s)	517
GsuI	CTGGAG	2 cut(s)	182, 467
HaeII	RGCGCY	2 cut(s)	507, 609
HaeIII	GGCC	3 cut(s)	138, 194, 498
HapII	CCGG	1 cut(s)	950
HhaI	GCGC	2 cut(s)	506, 608
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	4 cut(s)	193, 624, 808, 893
Hin6I	GCGC	2 cut(s)	504, 606
HinP1I	GCGC	2 cut(s)	504, 606
HindIII	AAGCTT	2 cut(s)	227, 906
HinfI	GANTC	8 cut(s)	82, 131, 157, 174, 580, 772, 784, 916
HpaII	CCGG	1 cut(s)	950
HphI	GGTGA	3 cut(s)	22, 735, 784
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	4 cut(s)	254, 783, 823, 997
Hpy188III	TCNNGA	5 cut(s)	161, 434, 575, 776, 920
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	6 cut(s)	305, 342, 359, 464, 762, 872
HpyCH4III	ACNGT	2 cut(s)	387, 940
HpyCH4IV	ACGT	3 cut(s)	126, 246, 306
HpyCH4V	TGCA	6 cut(s)	4, 541, 752, 854, 928, 1008
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	500, 576
HpySE526I	ACGT	3 cut(s)	126, 246, 306
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	4 cut(s)	193, 624, 808, 893
HspAI	GCGC	2 cut(s)	504, 606
KasI	GGCGCC	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	5 cut(s)	12, 181, 436, 636, 778
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	1 cut(s)	525
MabI	ACCWGGT	1 cut(s)	745
MaeI	CTAG	2 cut(s)	299, 461
MaeII	ACGT	3 cut(s)	126, 246, 306
MaeIII	GTNAC	3 cut(s)	352, 488, 790
MalI	GATC	5 cut(s)	14, 183, 438, 638, 780
MboI	GATC	5 cut(s)	12, 181, 436, 636, 778
MboII	GAAGA	6 cut(s)	329, 878, 884, 887, 914, 950
MflI	RGATCY	2 cut(s)	436, 778
MhlI	GDGCHC	1 cut(s)	967
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	3 cut(s)	390, 546, 718
MluNI	TGGCCA	1 cut(s)	194
Mly113I	GGCGCC	1 cut(s)	606
MlyI	GAGTC	2 cut(s)	76, 140
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	5 cut(s)	85, 159, 366, 460, 803
Mox20I	TGGCCA	1 cut(s)	194
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	5 cut(s)	153, 389, 441, 588, 911
MslI	CAYNNNNRTG	1 cut(s)	894
Msp20I	TGGCCA	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	1 cut(s)	950
MspR9I	CCNGG	4 cut(s)	747, 839, 950, 951
MvaI	CCWGG	2 cut(s)	747, 839
MwoI	GCNNNNNNNGC	1 cut(s)	102
NarI	GGCGCC	1 cut(s)	606
NciI	CCSGG	2 cut(s)	950, 951
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	5 cut(s)	12, 181, 436, 636, 778
NlaIII	CATG	4 cut(s)	193, 624, 808, 893
NlaIV	GGNNCC	4 cut(s)	556, 607, 780, 948
NmuCI	GTSAC	3 cut(s)	352, 488, 790
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	893
PciI	ACATGT	1 cut(s)	889
PfeI	GAWTC	6 cut(s)	157, 174, 580, 772, 784, 916
PkrI	GCNGC	1 cut(s)	540
PleI	GAGTC	2 cut(s)	76, 139
PluTI	GGCGCC	1 cut(s)	609
PpsI	GAGTC	2 cut(s)	76, 139
PpuMI	RGGWCCY	1 cut(s)	946
PscI	ACATGT	1 cut(s)	889
PshBI	ATTAAT	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	946
Psp6I	CCWGG	2 cut(s)	745, 837
PspFI	CCCAGC	1 cut(s)	513
PspGI	CCWGG	2 cut(s)	745, 837
PspN4I	GGNNCC	4 cut(s)	556, 607, 780, 948
PspPI	GGNCC	2 cut(s)	295, 946
PspPPI	RGGWCCY	1 cut(s)	946
PsuI	RGATCY	2 cut(s)	436, 778
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
RseI	CAYNNNNRTG	1 cut(s)	894
SaqAI	TTAA	5 cut(s)	153, 389, 441, 588, 911
SatI	GCNGC	1 cut(s)	539
Sau3AI	GATC	5 cut(s)	12, 181, 436, 636, 778
Sau96I	GGNCC	2 cut(s)	295, 946
SchI	GAGTC	2 cut(s)	76, 140
ScrFI	CCNGG	4 cut(s)	747, 839, 950, 951
SduI	GDGCHC	1 cut(s)	967
SexAI	ACCWGGT	1 cut(s)	745
SfoI	GGCGCC	1 cut(s)	607
SinI	GGWCC	2 cut(s)	295, 946
SmaI	CCCGGG	1 cut(s)	951
SmiMI	CAYNNNNRTG	1 cut(s)	894
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	3 cut(s)	390, 546, 718
SsiI	CCGC	3 cut(s)	149, 630, 689
SspDI	GGCGCC	1 cut(s)	605
SspMI	CTAG	2 cut(s)	299, 461
StyD4I	CCNGG	4 cut(s)	745, 837, 948, 949
TaaI	ACNGT	2 cut(s)	387, 940
TaiI	ACGT	3 cut(s)	129, 249, 309
TaqI	TCGA	3 cut(s)	327, 894, 935
TasI	AATT	3 cut(s)	390, 546, 718
TfiI	GAWTC	6 cut(s)	157, 174, 580, 772, 784, 916
Tru1I	TTAA	5 cut(s)	153, 389, 441, 588, 911
Tru9I	TTAA	5 cut(s)	153, 389, 441, 588, 911
TscAI	CASTG	2 cut(s)	1010, 1015
TseFI	GTSAC	3 cut(s)	352, 488, 790
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	3 cut(s)	352, 488, 790
TspDTI	ATGAA	3 cut(s)	840, 879, 915
TspGWI	ACGGA	2 cut(s)	326, 360
TspMI	CCCGGG	1 cut(s)	949
TspRI	CASTG	2 cut(s)	1010, 1015
Vha464I	CTTAAG	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	295, 946
VspI	ATTAAT	1 cut(s)	588
XagI	CCTNNNNNAGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	718
XceI	RCATGY	1 cut(s)	893
XmaI	CCCGGG	1 cut(s)	949
XspI	CTAG	2 cut(s)	299, 461
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.