AT1G48520

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17940050 .. 17942864
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48520.1

Sequence Viewer

Length: 1653 bp
ATGTCTACCACATTGTTGAGAACAATTCAGCTAAACCAGTTCTCACTTCTCGGAACTAGCTTGTTAAGAAGGAGAAGGAGTAACAACTTCTCCGTGAGGTCTTGTGGAAGCCAAACAACGACGACCCATGAAGCTAAACAGTCTTCTCCAACAAGGGTTGCTCCAAAAAACCACAAAAGCAACCAACTTGATGAGATTCTGAGAGATTACGAAGCTGTAATTGGGATAGAGACTCATGTTCAGCTCTCTACATTGACAAAAGCCTTTTGTAGTTGCTCTAACAATTACGGTTCTTATCCAAACACAAGTATTTGTCCTGTTTGTATGGGTTTGCCTGGTGCTTTGCCTGTTTTGAATTCCAAAGTTGTTGAATTTGGTGTTAGATTGGGTTTAGCTTTGAATTGTGATTTGTCTCTTAAGTCTAAATTCGATAGGAAGCAGTATTTTTATCCAGATCTTCCTAAAGGTTATCAGATTTCTCAGTTTGATATTCCTATTGCATCTGGTGGTTATGTGGATGTGGATATTCCTCTTGAGTTTGGTGGTGGACATAGGAGATTTGGTATTACTAGGGTTCATATGGAAGAAGATGCTGGCAAGTTACTTCATTCAGACACAGGAGATTACTCTCAGGTAGATTTGAATAGAGCAGGTGTTCCTTTACTTGAGATTGTTTCTGAACCTGATATGAGAAGTGGTATAGAAGCTGCTGAATACGCTTGTGAAATGCAACGGATTGCGAGGTATTTGGGAGTCAGTAATGGGAATATGCAAGAAGGCTCTCTTCGCTGCGATGTCAATATCTCAATCCGTCCTATTGGGCAAGCTGAGTTTGGCACCAAGGTAGAAATAAAGAATTTGAACGCGTTTTCAGCAATTAGCAGAGCAATAGACTTTGAGATATCAAGACAAGCACTTCTCTATAATCAGGGGAAAGCAGACCAGATTGTAACGGAGACTCGGCTATGGGAAGAAGGCGCTCAGAAAACAGTAACAATGAGGAAAAAGGAAGGGCTTGCTGATTACCGCTACTTTCCAGAACCAGATCTTCCAGAAGTTATCCTTACCCAAGAATATGTTGATAGCATTCGTGCTTCTTTACCGGAACTCCCTGAAGCAAAGCGCAGGAGATATGAGGCGATGGGTCTAGGCATGCAAGATGTGCTTTTCCTCGCGAATGACGTCAGTGTTGCAGAATATTTCGATGCAGTCATTGGTAAGGGTGCTGAAGTGAAGTTGGCAGCAAATTGGATAATGAGTGATATTGCTGCTTACTTGAAAAATGAGAAACTTTCTATCAATGATATTAAACTCACTCCCCAAGAGTTGGCTGAACTGATAGCTGCAATCAAAGATGGAACCATTAGCGGAAAGATCGGAAAAGAGATACTGTTTGAGCTATTAGCCAAAGGTGGAACCGTCAAAGGAATGATAAAGGCAAAAGATTTAGTTCAGATAACTGATCCTGCAGAGATTGAGAAAATGGTTATTCAAGTGGTCTCTGAGAACCCAAAGCAGCTTGAGCAGTACCGCAGTGGGAAAACCAAGCTTCAAGGCTATTTTGCTGGCCAGGTTATGAAAATGTCGAAAGGCAAGGCAAACCCAGGGTTACTGAACAAGATCCTCCTGGAGAAGCTCAATGCCAAAGACTGA

Protein Analysis

550

Amino Acids

60.94

Weight (kDa)

7.52

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GatB_N PF02934 73 - 360 5.6e-115 GatB/GatE catalytic domain
GatB_Yqey PF02637 399 - 546 1e-51 GatB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 641
AatII GACGTC 1 cut(s) 1185
Acc36I ACCTGC 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 836
AccB7I CCANNNNNTGG 1 cut(s) 1327
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 866, 1175
AciI CCGC 3 cut(s) 1027, 1368, 1531
AclWI GGATC 2 cut(s) 1457, 1615
AcoI YGGCCR 1 cut(s) 1567
AcsI RAATTY 4 cut(s) 355, 371, 425, 856
AcuI CTGAAG 2 cut(s) 1134, 1248
AcyI GRCGYC 1 cut(s) 1182
AfaI GTAC 1 cut(s) 1529
AfiI CCNNNNNNNGG 1 cut(s) 1327
AflII CTTAAG 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 864
AgsI TTSAA 8 cut(s) 355, 371, 400, 643, 862, 1279, 1493, 1553
AjnI CCWGG 4 cut(s) 334, 1569, 1603, 1626
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
Alw26I GTCTC 4 cut(s) 224, 417, 950, 1504
AlwI GGATC 2 cut(s) 1457, 1615
AoxI GGCC 1 cut(s) 1567
ApeKI GCWGC 6 cut(s) 707, 789, 1241, 1268, 1343, 1516
ApoI RAATTY 4 cut(s) 355, 371, 425, 856
AspLEI GCGC 2 cut(s) 980, 1125
BalI TGGCCA 1 cut(s) 1569
BanI GGYRCC 1 cut(s) 836
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 6 cut(s) 694, 776, 1253, 1255, 1330, 1528
BccI CCATC 2 cut(s) 1135, 1349
BciT130I CCWGG 4 cut(s) 336, 1571, 1605, 1628
BcoDI GTCTC 4 cut(s) 224, 417, 950, 1504
BfaI CTAG 3 cut(s) 57, 570, 1148
BfmI CTRYAG 1 cut(s) 1467
BfoI RGCGCY 1 cut(s) 981
BfrI CTTAAG 1 cut(s) 416
BfuAI ACCTGC 1 cut(s) 641
BglII AGATCT 2 cut(s) 454, 1045
BisI GCNGC 6 cut(s) 708, 790, 1242, 1269, 1344, 1517
BlsI GCNGC 6 cut(s) 709, 791, 1243, 1270, 1345, 1518
Bme1390I CCNGG 4 cut(s) 336, 1571, 1605, 1628
BmiI GGNNCC 3 cut(s) 838, 1360, 1417
BmrFI CCNGG 4 cut(s) 336, 1571, 1605, 1628
BmsI GCATC 3 cut(s) 509, 580, 1195
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 1649
BpuEI CTTGAG 3 cut(s) 554, 686, 1541
BsaHI GRCGYC 1 cut(s) 1182
BsaI GGTCTC 1 cut(s) 1504
BsaJI CCNNGG 3 cut(s) 840, 1603, 1604
BsaWI WCCGGW 1 cut(s) 1102
BsaXI ACNNNNNCTCC 8 cut(s) 64, 74, 94, 104, 547, 577, 1092, 1122
Bsc4I CCNNNNNNNGG 1 cut(s) 1327
Bse1I ACTGG 1 cut(s) 37
BseBI CCWGG 4 cut(s) 336, 1571, 1605, 1628
BseDI CCNNGG 3 cut(s) 840, 1603, 1604
BseGI GGATG 1 cut(s) 523
BseLI CCNNNNNNNGG 1 cut(s) 1327
BseMII CTCAG 6 cut(s) 191, 494, 644, 819, 995, 1494
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 6 cut(s) 694, 776, 1253, 1255, 1330, 1528
Bsh1236I CGCG 2 cut(s) 866, 1175
BshFI GGCC 1 cut(s) 1569
BshNI GGYRCC 1 cut(s) 836
BsiSI CCGG 1 cut(s) 1103
BslI CCNNNNNNNGG 1 cut(s) 1327
BsmAI GTCTC 4 cut(s) 224, 417, 950, 1504
BsmI GAATGC 1 cut(s) 1086
BsnI GGCC 1 cut(s) 1569
Bso31I GGTCTC 1 cut(s) 1504
Bsp143I GATC 5 cut(s) 454, 1045, 1374, 1462, 1620
Bsp68I TCGCGA 1 cut(s) 1175
BspACI CCGC 3 cut(s) 1027, 1368, 1531
BspANI GGCC 1 cut(s) 1569
BspCNI CTCAG 6 cut(s) 192, 493, 643, 820, 994, 1495
BspFNI CGCG 2 cut(s) 866, 1175
BspLI GGNNCC 3 cut(s) 838, 1360, 1417
BspMAI CTGCAG 1 cut(s) 1471
BspMI ACCTGC 1 cut(s) 641
BspPI GGATC 2 cut(s) 1457, 1615
BspT107I GGYRCC 1 cut(s) 836
BspTI CTTAAG 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 1504
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 3 cut(s) 840, 1603, 1604
BssMI GATC 5 cut(s) 454, 1045, 1374, 1462, 1620
BssNI GRCGYC 1 cut(s) 1182
BssT1I CCWWGG 1 cut(s) 840
Bst2UI CCWGG 4 cut(s) 336, 1571, 1605, 1628
Bst4CI ACNGT 5 cut(s) 141, 290, 991, 1392, 1420
Bst6I CTCTTC 1 cut(s) 789
BstACI GRCGYC 1 cut(s) 1182
BstAFI CTTAAG 1 cut(s) 416
BstAPI GCANNNNNTGC 1 cut(s) 1162
BstC8I GCNNGC 5 cut(s) 595, 825, 1017, 1154, 1567
BstDEI CTNAG 6 cut(s) 200, 480, 630, 828, 981, 1503
BstF5I GGATG 1 cut(s) 523
BstFNI CGCG 2 cut(s) 866, 1175
BstH2I RGCGCY 1 cut(s) 981
BstHHI GCGC 2 cut(s) 980, 1125
BstKTI GATC 5 cut(s) 457, 1048, 1377, 1465, 1623
BstMAI GTCTC 4 cut(s) 224, 417, 950, 1504
BstMBI GATC 5 cut(s) 454, 1045, 1374, 1462, 1620
BstMWI GCNNNNNNNGC 5 cut(s) 716, 786, 872, 1162, 1522
BstNI CCWGG 4 cut(s) 336, 1571, 1605, 1628
BstNSI RCATGY 1 cut(s) 1156
BstSCI CCNGG 4 cut(s) 334, 1569, 1603, 1626
BstSFI CTRYAG 1 cut(s) 1467
BstUI CGCG 2 cut(s) 866, 1175
BstV1I GCAGC 6 cut(s) 694, 776, 1253, 1255, 1330, 1528
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 3 cut(s) 454, 1045, 1620
BstYI RGATCY 3 cut(s) 454, 1045, 1620
BsuRI GGCC 1 cut(s) 1569
BtgZI GCGATG 2 cut(s) 807, 1154
BtsCI GGATG 1 cut(s) 523
BtsI GCAGTG 1 cut(s) 1540
BtsIMutI CAGTG 2 cut(s) 1192, 1540
BtuMI TCGCGA 1 cut(s) 1175
BveI ACCTGC 1 cut(s) 641
Cac8I GCNNGC 5 cut(s) 595, 825, 1017, 1154, 1567
CfoI GCGC 2 cut(s) 980, 1125
Csp6I GTAC 1 cut(s) 1528
CviAII CATG 3 cut(s) 128, 236, 1153
CviQI GTAC 1 cut(s) 1528
DdeI CTNAG 6 cut(s) 200, 480, 630, 828, 981, 1503
DpnI GATC 5 cut(s) 456, 1047, 1376, 1464, 1622
DpnII GATC 5 cut(s) 454, 1045, 1374, 1462, 1620
EaeI YGGCCR 1 cut(s) 1567
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
Eco130I CCWWGG 1 cut(s) 840
Eco31I GGTCTC 1 cut(s) 1504
Eco32I GATATC 1 cut(s) 903
Eco57I CTGAAG 2 cut(s) 1134, 1248
EcoRI GAATTC 1 cut(s) 355
EcoRII CCWGG 4 cut(s) 334, 1569, 1603, 1626
EcoRV GATATC 1 cut(s) 903
EcoT14I CCWWGG 1 cut(s) 840
ErhI CCWWGG 1 cut(s) 840
FaeI CATG 3 cut(s) 131, 239, 1156
FalI AAGNNNNNCTT 6 cut(s) 768, 800, 1047, 1079, 1149, 1181
FatI CATG 3 cut(s) 127, 235, 1152
FauNDI CATATG 1 cut(s) 579
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 6 cut(s) 708, 790, 1242, 1269, 1344, 1517
FokI GGATG 1 cut(s) 530
Fsp4HI GCNGC 6 cut(s) 708, 790, 1242, 1269, 1344, 1517
FspBI CTAG 3 cut(s) 57, 570, 1148
GlaI GCGC 2 cut(s) 979, 1124
GluI GCNGC 6 cut(s) 708, 790, 1242, 1269, 1344, 1517
GsuI CTGGAG 1 cut(s) 1649
HaeII RGCGCY 1 cut(s) 981
HaeIII GGCC 1 cut(s) 1569
HapII CCGG 1 cut(s) 1103
HhaI GCGC 2 cut(s) 980, 1125
Hin1I GRCGYC 1 cut(s) 1182
Hin1II CATG 3 cut(s) 131, 239, 1156
Hin6I GCGC 2 cut(s) 978, 1123
HinP1I GCGC 2 cut(s) 978, 1123
HindIII AAGCTT 1 cut(s) 1547
HinfI GANTC 4 cut(s) 196, 232, 753, 958
HpaII CCGG 1 cut(s) 1103
Hpy166II GTNNAC 2 cut(s) 6, 548
Hpy188I TCNGA 9 cut(s) 53, 201, 474, 613, 679, 984, 1379, 1455, 1504
Hpy188III TCNNGA 6 cut(s) 452, 533, 906, 1037, 1052, 1174
Hpy8I GTNNAC 2 cut(s) 6, 548
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 5 cut(s) 63, 69, 770, 968, 1004
HpyCH4III ACNGT 5 cut(s) 141, 290, 991, 1392, 1420
HpyCH4IV ACGT 1 cut(s) 1182
HpyCH4V TGCA 8 cut(s) 500, 730, 772, 1156, 1193, 1208, 1346, 1469
HpyF10VI GCNNNNNNNGC 5 cut(s) 716, 786, 872, 1162, 1522
HpyF3I CTNAG 6 cut(s) 200, 480, 630, 828, 981, 1503
HpySE526I ACGT 1 cut(s) 1182
Hsp92I GRCGYC 1 cut(s) 1182
Hsp92II CATG 3 cut(s) 131, 239, 1156
HspAI GCGC 2 cut(s) 978, 1123
Kzo9I GATC 5 cut(s) 454, 1045, 1374, 1462, 1620
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 6 cut(s) 694, 776, 1253, 1255, 1330, 1528
LweI GCATC 3 cut(s) 509, 580, 1195
MaeI CTAG 3 cut(s) 57, 570, 1148
MaeII ACGT 1 cut(s) 1182
MaeIII GTNAC 5 cut(s) 80, 600, 949, 991, 1608
MalI GATC 5 cut(s) 456, 1047, 1376, 1464, 1622
MboI GATC 5 cut(s) 454, 1045, 1374, 1462, 1620
MboII GAAGA 7 cut(s) 135, 449, 596, 599, 776, 983, 1040
MflI RGATCY 3 cut(s) 454, 1045, 1620
MlsI TGGCCA 1 cut(s) 1569
MluI ACGCGT 1 cut(s) 864
MluNI TGGCCA 1 cut(s) 1569
MlyI GAGTC 3 cut(s) 226, 762, 952
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 7 cut(s) 90, 540, 735, 993, 1129, 1181, 1634
Mox20I TGGCCA 1 cut(s) 1569
MscI TGGCCA 1 cut(s) 1569
MseI TTAA 3 cut(s) 65, 417, 1308
Msp20I TGGCCA 1 cut(s) 1569
MspCI CTTAAG 1 cut(s) 416
MspI CCGG 1 cut(s) 1103
MspR9I CCNGG 4 cut(s) 336, 1571, 1605, 1628
Mva1269I GAATGC 1 cut(s) 1086
MvaI CCWGG 4 cut(s) 336, 1571, 1605, 1628
MvnI CGCG 2 cut(s) 866, 1175
MwoI GCNNNNNNNGC 5 cut(s) 716, 786, 872, 1162, 1522
NdeI CATATG 1 cut(s) 579
NdeII GATC 5 cut(s) 454, 1045, 1374, 1462, 1620
NlaIII CATG 3 cut(s) 131, 239, 1156
NlaIV GGNNCC 3 cut(s) 838, 1360, 1417
NmeAIII GCCGAG 1 cut(s) 940
NruI TCGCGA 1 cut(s) 1175
NspI RCATGY 1 cut(s) 1156
PaeI GCATGC 1 cut(s) 1156
PaqCI CACCTGC 1 cut(s) 641
PasI CCCWGGG 1 cut(s) 1604
PcsI WCGNNNNNNNCGW 1 cut(s) 1179
PctI GAATGC 1 cut(s) 1086
PfeI GAWTC 1 cut(s) 196
PflMI CCANNNNNTGG 1 cut(s) 1327
PfoI TCCNGGA 1 cut(s) 1626
PkrI GCNGC 6 cut(s) 709, 791, 1243, 1270, 1345, 1518
PleI GAGTC 3 cut(s) 226, 761, 952
PpsI GAGTC 3 cut(s) 226, 761, 952
Psp6I CCWGG 4 cut(s) 334, 1569, 1603, 1626
PspGI CCWGG 4 cut(s) 334, 1569, 1603, 1626
PspN4I GGNNCC 3 cut(s) 838, 1360, 1417
PstI CTGCAG 1 cut(s) 1471
PsuI RGATCY 3 cut(s) 454, 1045, 1620
RruI TCGCGA 1 cut(s) 1175
RsaI GTAC 1 cut(s) 1529
RsaNI GTAC 1 cut(s) 1528
SaqAI TTAA 3 cut(s) 65, 417, 1308
SatI GCNGC 6 cut(s) 708, 790, 1242, 1269, 1344, 1517
Sau3AI GATC 5 cut(s) 454, 1045, 1374, 1462, 1620
SchI GAGTC 3 cut(s) 226, 762, 952
ScrFI CCNGG 4 cut(s) 336, 1571, 1605, 1628
SfaNI GCATC 3 cut(s) 509, 580, 1195
SfcI CTRYAG 1 cut(s) 1467
SmlI CTYRAG 4 cut(s) 416, 533, 665, 1520
SmoI CTYRAG 4 cut(s) 416, 533, 665, 1520
SphI GCATGC 1 cut(s) 1156
SsiI CCGC 3 cut(s) 1027, 1368, 1531
SspI AATATT 1 cut(s) 1199
SspMI CTAG 3 cut(s) 57, 570, 1148
StyD4I CCNGG 4 cut(s) 334, 1569, 1603, 1626
StyI CCWWGG 1 cut(s) 840
TaaI ACNGT 5 cut(s) 141, 290, 991, 1392, 1420
TaiI ACGT 1 cut(s) 1185
TaqI TCGA 3 cut(s) 429, 1203, 1586
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 3 cut(s) 65, 417, 1308
Tru9I TTAA 3 cut(s) 65, 417, 1308
TscAI CASTG 2 cut(s) 1192, 1540
TseI GCWGC 6 cut(s) 707, 789, 1241, 1268, 1343, 1516
TspDTI ATGAA 4 cut(s) 144, 566, 596, 1592
TspGWI ACGGA 4 cut(s) 82, 748, 800, 968
TspRI CASTG 2 cut(s) 1192, 1540
Van91I CCANNNNNTGG 1 cut(s) 1327
Vha464I CTTAAG 1 cut(s) 416
XapI RAATTY 4 cut(s) 355, 371, 425, 856
XceI RCATGY 1 cut(s) 1156
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 3 cut(s) 57, 570, 1148
ZraI GACGTC 1 cut(s) 1183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.