RLG00000009588

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
54964969 .. 54969635
4667 bp
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UTR
Exon/CDS
Intron
RLM00000009588

Sequence Viewer

Length: 1569 bp
ATGAGAAGTGAACAAACCCAGACAGCCAGCCAAGAGAAGGTTAAGCCACAAGTGAAAGTTTCTAACTTGAACCCGAATAAGAAACCGGAGAATATCTCCAAGGACTATGAAGCAGTCATAGGTATCGAAACCCATGTCCAGCTATCTACTCAGACCAAGGCTTTTTGTAGTTGCCCTTATAATTATGGCTCTCAACCAAACACTAGTATTTGCCCCATTTGTATGGGTCTGCCTGGTGCTTTACCGATTTTAAACTTTAAGGTCATTGAGTCTGCTGTGAAAGTTGGGCTTGCACTCAATTGCAAATTGGCAATGAACTCGAAGTTTGATAGGAAACAATACTTTTACGCGGACCTTCCAAAGGGGTACCAAATATCCCAGTTTGATGTTCCAATTGCGACCGGTGGCTACATTGATTTGGATATTCCAGTAGAGTTTGGTGGTGGGCATAGGAAGTTCGGCATTACAAGAGTTCACATGGAAGAGGATGCAGGGAAGCTGATGCATTCAGACGATGGAAGTTACTCACAGGAAAGTACCTTTCGCTTCGTTGATCTAAATAGAGCGGGTGTGCCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAAATGGTATTGAAGCTGCAGAATATGCTGCAGAAATACAGAGGGTGGTTCGGTATTTGGGAGTGAGTAATGGCAATATGCAAGAAGGTTCACTTCGTTGTGATGTCAATGTTTCTGTTCGACCAATTGGGCAATTACAGTTTGGGACGAAGGTGGAGATAAAAAATTTGAACGCTTTTTCGGCAGTGAGCAGGGCAATTGATTATGAAATTTCGAGGCAGGTGCTTCTTCATAGTCAAGGCCAAGGCAAAGAAATTGTACAGGAAACACGGCTATGGGAAGAAGGAGCTCAGAAAACAGTTACAATGAGGAAGAAAGAAGGACTATCTGATTACCGATATTTTCCAGAACCAGACCTTCCAGGAGTTTTCCTCACCCAGGACTATGTTGATGGTATTCATAACTCTTTGCCTGAACTTCCAGAAATGAAGCGTCGGAGGTATGAAAAGATGGGCCTAAGCATGCAGGACATTCTTTTCCTTGCTAACGATATGAATGTTGCAGAATTTTTTGATACTACTATTAAGAAGGGTGCTGATGCGAAGCTAGCTGCCAACTGGATAATGAGTGATATTGCTGCCTATATGAAAAATGAAGAGTTGTCCATCACTGAGGTCAAGCTTTCCCCTCAAGAGTTGGCTGAGTTAATAGCTTCCATAAAAGATGGGACTATTAGTGGGAAGATAGGGAAACAGATATTGTTTGAGCTTCTAGCAAAAGGTGGTACTGTGAAGGGACTGATAGAAGAAAAAGATTTAGTTCAGATTGTAGATCCCGCTGAGATTGAGAAAATGGTGGAAAAGGTGTTGTCAGAGAATCCAAAGCAGCTGGACCAATATCGCGGTGGAAAGACTAAGCTGCAAGGTTATTTTGCTGGCCAGATAATGAAACTGTCAAAAGGAAAAGCAAATCCAGGGCTTCTAAACAAGATTCTGTTAGAGAAATTAAATGCCAAAAGCTGA

Protein Analysis

523

Amino Acids

58.11

Weight (kDa)

6.4

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GatB_N PF02934 39 - 332 2.5e-114 GatB/GatE catalytic domain
GatB_Yqey PF02637 371 - 518 6.3e-52 GatB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AarI CACCTGC 1 cut(s) 817
Acc36I ACCTGC 1 cut(s) 817
Acc65I GGTACC 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 366
AccBSI CCGCTC 1 cut(s) 566
AccII CGCG 2 cut(s) 350, 1449
AciI CCGC 4 cut(s) 350, 566, 1383, 1449
AclWI GGATC 1 cut(s) 1373
AcoI YGGCCR 1 cut(s) 1483
AcsI RAATTY 3 cut(s) 772, 816, 1112
AfaI GTAC 4 cut(s) 368, 538, 867, 1333
AfiI CCNNNNNNNGG 3 cut(s) 37, 361, 985
AgeI ACCGGT 1 cut(s) 401
AgsI TTSAA 3 cut(s) 70, 620, 778
AhlI ACTAGT 1 cut(s) 203
AjnI CCWGG 4 cut(s) 232, 967, 984, 1519
Alw21I GWGCWC 1 cut(s) 898
AlwI GGATC 1 cut(s) 1373
AoxI GGCC 3 cut(s) 847, 1060, 1483
ApeKI GCWGC 6 cut(s) 623, 635, 1157, 1184, 1432, 1465
ApoI RAATTY 3 cut(s) 772, 816, 1112
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AsiGI ACCGGT 1 cut(s) 401
Asp718I GGTACC 1 cut(s) 366
AspS9I GGNCC 3 cut(s) 352, 1060, 1438
AsuHPI GGTGA 1 cut(s) 973
AsuNHI GCTAGC 1 cut(s) 1153
AvaII GGWCC 2 cut(s) 352, 1438
BaeGI GKGCMC 1 cut(s) 576
BalI TGGCCA 1 cut(s) 1485
BanI GGYRCC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 898
Bbv12I GWGCWC 1 cut(s) 898
BbvI GCAGC 6 cut(s) 610, 622, 1144, 1171, 1444, 1452
BccI CCATC 5 cut(s) 509, 992, 1051, 1220, 1265
BceAI ACGGC 1 cut(s) 893
BcgI CGANNNNNNTGC 4 cut(s) 300, 334, 811, 845
BciT130I CCWGG 4 cut(s) 234, 969, 986, 1521
BcuI ACTAGT 1 cut(s) 203
BfaI CTAG 3 cut(s) 204, 1154, 1319
BfmI CTRYAG 2 cut(s) 624, 636
BfuAI ACCTGC 1 cut(s) 817
BisI GCNGC 6 cut(s) 624, 636, 1158, 1185, 1433, 1466
BlsI GCNGC 6 cut(s) 625, 637, 1159, 1186, 1434, 1467
Bme1390I CCNGG 4 cut(s) 234, 969, 986, 1521
Bme18I GGWCC 2 cut(s) 352, 1438
BmgT120I GGNCC 3 cut(s) 352, 1060, 1438
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 4 cut(s) 234, 969, 986, 1521
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 3 cut(s) 478, 492, 1135
BmtI GCTAGC 1 cut(s) 1157
BmuI ACTGGG 1 cut(s) 373
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 963, 995
Bpu10I CCTNAGC 1 cut(s) 1064
BpuEI CTTGAG 2 cut(s) 602, 1221
BsaJI CCNNGG 5 cut(s) 99, 156, 850, 984, 1520
BsaWI WCCGGW 2 cut(s) 85, 401
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 361, 985
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 3 cut(s) 379, 428, 1169
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 4 cut(s) 234, 969, 986, 1521
BseDI CCNNGG 5 cut(s) 99, 156, 850, 984, 1520
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 3 cut(s) 37, 361, 985
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 5 cut(s) 164, 911, 1209, 1239, 1377
BseNI ACTGG 3 cut(s) 379, 428, 1169
BseSI GKGCMC 1 cut(s) 576
BseXI GCAGC 6 cut(s) 610, 622, 1144, 1171, 1444, 1452
Bsh1236I CGCG 2 cut(s) 350, 1449
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 3 cut(s) 849, 1062, 1485
BshNI GGYRCC 1 cut(s) 366
BshTI ACCGGT 1 cut(s) 401
BsiEI CGRYCG 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 898
BsiSI CCGG 2 cut(s) 86, 402
BslFI GGGAC 3 cut(s) 766, 1288, 1356
BslI CCNNNNNNNGG 3 cut(s) 37, 361, 985
BsmFI GGGAC 3 cut(s) 766, 1288, 1356
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 3 cut(s) 849, 1062, 1485
Bsp1286I GDGCHC 2 cut(s) 576, 898
Bsp1407I TGTACA 1 cut(s) 865
Bsp143I GATC 2 cut(s) 553, 1378
BspACI CCGC 4 cut(s) 350, 566, 1383, 1449
BspANI GGCC 3 cut(s) 849, 1062, 1485
BspCNI CTCAG 5 cut(s) 163, 910, 1210, 1240, 1378
BspFNI CGCG 2 cut(s) 350, 1449
BspLI GGNNCC 1 cut(s) 368
BspMAI CTGCAG 2 cut(s) 628, 640
BspMI ACCTGC 1 cut(s) 817
BspOI GCTAGC 1 cut(s) 1157
BspPI GGATC 1 cut(s) 1373
BspT107I GGYRCC 1 cut(s) 366
BsrBI CCGCTC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 401
BsrGI TGTACA 1 cut(s) 865
BsrI ACTGG 3 cut(s) 379, 428, 1169
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 5 cut(s) 99, 156, 850, 984, 1520
BssMI GATC 2 cut(s) 553, 1378
BssT1I CCWWGG 3 cut(s) 99, 156, 850
Bst2UI CCWGG 4 cut(s) 234, 969, 986, 1521
Bst4CI ACNGT 4 cut(s) 747, 907, 1336, 1500
Bst6I CTCTTC 2 cut(s) 477, 1197
BstAPI GCANNNNNTGC 1 cut(s) 632
BstAUI TGTACA 1 cut(s) 865
BstC8I GCNNGC 5 cut(s) 28, 291, 1070, 1155, 1483
BstDEI CTNAG 7 cut(s) 150, 897, 1064, 1218, 1248, 1386, 1461
BstENI CCTNNNNNAGG 2 cut(s) 359, 983
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 2 cut(s) 350, 1449
BstKTI GATC 2 cut(s) 556, 1381
BstMBI GATC 2 cut(s) 553, 1378
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 3 cut(s) 632, 788, 1154
BstNI CCWGG 4 cut(s) 234, 969, 986, 1521
BstNSI RCATGY 1 cut(s) 1072
BstSCI CCNGG 4 cut(s) 232, 967, 984, 1519
BstSFI CTRYAG 2 cut(s) 624, 636
BstSLI GKGCMC 1 cut(s) 576
BstUI CGCG 2 cut(s) 350, 1449
BstV1I GCAGC 6 cut(s) 610, 622, 1144, 1171, 1444, 1452
BstX2I RGATCY 1 cut(s) 1378
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 1 cut(s) 1378
BsuRI GGCC 3 cut(s) 849, 1062, 1485
BtsCI GGATG 1 cut(s) 493
BtsI GCAGTG 1 cut(s) 798
BtsIMutI CAGTG 2 cut(s) 798, 1215
BveI ACCTGC 1 cut(s) 817
Cac8I GCNNGC 5 cut(s) 28, 291, 1070, 1155, 1483
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 3 cut(s) 352, 1060, 1438
CseI GACGC 1 cut(s) 1028
Csp6I GTAC 4 cut(s) 367, 537, 866, 1332
CspAI ACCGGT 1 cut(s) 401
CviAII CATG 3 cut(s) 134, 478, 1069
CviQI GTAC 4 cut(s) 367, 537, 866, 1332
DdeI CTNAG 7 cut(s) 150, 897, 1064, 1218, 1248, 1386, 1461
DpnI GATC 2 cut(s) 555, 1380
DpnII GATC 2 cut(s) 553, 1378
DraI TTTAAA 1 cut(s) 252
EaeI YGGCCR 1 cut(s) 1483
Eam1104I CTCTTC 2 cut(s) 477, 1197
EarI CTCTTC 2 cut(s) 477, 1197
Ecl136II GAGCTC 1 cut(s) 896
Eco130I CCWWGG 3 cut(s) 99, 156, 850
Eco24I GRGCYC 1 cut(s) 898
Eco47I GGWCC 2 cut(s) 352, 1438
Eco53kI GAGCTC 1 cut(s) 896
EcoICRI GAGCTC 1 cut(s) 896
EcoNI CCTNNNNNAGG 2 cut(s) 359, 983
EcoRII CCWGG 4 cut(s) 232, 967, 984, 1519
EcoT14I CCWWGG 3 cut(s) 99, 156, 850
EcoT22I ATGCAT 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 898
ErhI CCWWGG 3 cut(s) 99, 156, 850
FaeI CATG 3 cut(s) 137, 481, 1072
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 684, 716
FaqI GGGAC 3 cut(s) 766, 1288, 1356
FatI CATG 3 cut(s) 133, 477, 1068
FauI CCCGC 2 cut(s) 559, 1390
Fnu4HI GCNGC 6 cut(s) 624, 636, 1158, 1185, 1433, 1466
FokI GGATG 1 cut(s) 500
FriOI GRGCYC 1 cut(s) 898
Fsp4HI GCNGC 6 cut(s) 624, 636, 1158, 1185, 1433, 1466
FspBI CTAG 3 cut(s) 204, 1154, 1319
GluI GCNGC 6 cut(s) 624, 636, 1158, 1185, 1433, 1466
HaeIII GGCC 3 cut(s) 849, 1062, 1485
HapII CCGG 2 cut(s) 86, 402
HgaI GACGC 1 cut(s) 1028
Hin1II CATG 3 cut(s) 137, 481, 1072
HindIII AAGCTT 1 cut(s) 1226
HinfI GANTC 3 cut(s) 269, 1423, 1537
HpaII CCGG 2 cut(s) 86, 402
HphI GGTGA 1 cut(s) 973
Hpy166II GTNNAC 3 cut(s) 11, 475, 698
Hpy188I TCNGA 8 cut(s) 153, 511, 595, 900, 937, 1044, 1371, 1420
Hpy188III TCNNGA 3 cut(s) 953, 1028, 1238
Hpy8I GTNNAC 3 cut(s) 11, 475, 698
Hpy99I CGWCG 1 cut(s) 1044
HpyAV CCTTC 9 cut(s) 31, 365, 686, 751, 884, 920, 974, 1129, 1333
HpyCH4III ACNGT 4 cut(s) 747, 907, 1336, 1500
HpyF10VI GCNNNNNNNGC 3 cut(s) 632, 788, 1154
HpyF3I CTNAG 7 cut(s) 150, 897, 1064, 1218, 1248, 1386, 1461
Hsp92II CATG 3 cut(s) 137, 481, 1072
KpnI GGTACC 1 cut(s) 370
Kzo9I GATC 2 cut(s) 553, 1378
LmnI GCTCC 1 cut(s) 893
Lsp1109I GCAGC 6 cut(s) 610, 622, 1144, 1171, 1444, 1452
LweI GCATC 3 cut(s) 478, 492, 1135
MaeI CTAG 3 cut(s) 204, 1154, 1319
MaeIII GTNAC 2 cut(s) 521, 907
MalI GATC 2 cut(s) 555, 1380
MbiI CCGCTC 1 cut(s) 566
MboI GATC 2 cut(s) 553, 1378
MboII GAAGA 7 cut(s) 494, 827, 899, 931, 1214, 1300, 1364
MfeI CAATTG 4 cut(s) 298, 393, 732, 804
MflI RGATCY 1 cut(s) 1378
MhlI GDGCHC 2 cut(s) 576, 898
MlsI TGGCCA 1 cut(s) 1485
MluNI TGGCCA 1 cut(s) 1485
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 1022
MnlI CCTC 8 cut(s) 478, 642, 816, 909, 989, 1038, 1213, 1245
Mox20I TGGCCA 1 cut(s) 1485
Mph1103I ATGCAT 1 cut(s) 507
MscI TGGCCA 1 cut(s) 1485
MseI TTAA 6 cut(s) 42, 251, 258, 1131, 1253, 1553
MslI CAYNNNNRTG 2 cut(s) 221, 880
Msp20I TGGCCA 1 cut(s) 1485
MspA1I CMGCKG 2 cut(s) 1385, 1435
MspI CCGG 2 cut(s) 86, 402
MspR9I CCNGG 4 cut(s) 234, 969, 986, 1521
MunI CAATTG 4 cut(s) 298, 393, 732, 804
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 4 cut(s) 234, 969, 986, 1521
MvnI CGCG 2 cut(s) 350, 1449
MwoI GCNNNNNNNGC 3 cut(s) 632, 788, 1154
NdeII GATC 2 cut(s) 553, 1378
NheI GCTAGC 1 cut(s) 1153
NlaIII CATG 3 cut(s) 137, 481, 1072
NlaIV GGNNCC 1 cut(s) 368
NsiI ATGCAT 1 cut(s) 507
NspI RCATGY 1 cut(s) 1072
PaeI GCATGC 1 cut(s) 1072
PaqCI CACCTGC 1 cut(s) 817
PctI GAATGC 1 cut(s) 505
PfeI GAWTC 2 cut(s) 1423, 1537
PfoI TCCNGGA 1 cut(s) 967
PinAI ACCGGT 1 cut(s) 401
PkrI GCNGC 6 cut(s) 625, 637, 1159, 1186, 1434, 1467
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PsiI TTATAA 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 898
Psp6I CCWGG 4 cut(s) 232, 967, 984, 1519
PspGI CCWGG 4 cut(s) 232, 967, 984, 1519
PspN4I GGNNCC 1 cut(s) 368
PspPI GGNCC 3 cut(s) 352, 1060, 1438
PstI CTGCAG 2 cut(s) 628, 640
PsuI RGATCY 1 cut(s) 1378
PvuII CAGCTG 1 cut(s) 1435
RsaI GTAC 4 cut(s) 368, 538, 867, 1333
RsaNI GTAC 4 cut(s) 367, 537, 866, 1332
RseI CAYNNNNRTG 2 cut(s) 221, 880
SacI GAGCTC 1 cut(s) 898
SaqAI TTAA 6 cut(s) 42, 251, 258, 1131, 1253, 1553
SatI GCNGC 6 cut(s) 624, 636, 1158, 1185, 1433, 1466
Sau3AI GATC 2 cut(s) 553, 1378
Sau96I GGNCC 3 cut(s) 352, 1060, 1438
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 4 cut(s) 234, 969, 986, 1521
SduI GDGCHC 2 cut(s) 576, 898
SfaNI GCATC 3 cut(s) 478, 492, 1135
SfcI CTRYAG 2 cut(s) 624, 636
SinI GGWCC 2 cut(s) 352, 1438
SmiMI CAYNNNNRTG 2 cut(s) 221, 880
SmlI CTYRAG 2 cut(s) 581, 1236
SmoI CTYRAG 2 cut(s) 581, 1236
SpeI ACTAGT 1 cut(s) 203
SphI GCATGC 1 cut(s) 1072
SsiI CCGC 4 cut(s) 350, 566, 1383, 1449
SspMI CTAG 3 cut(s) 204, 1154, 1319
SstI GAGCTC 1 cut(s) 898
StyD4I CCNGG 4 cut(s) 232, 967, 984, 1519
StyI CCWWGG 3 cut(s) 99, 156, 850
TaaI ACNGT 4 cut(s) 747, 907, 1336, 1500
TaqI TCGA 4 cut(s) 126, 320, 727, 821
TatI WGTACW 1 cut(s) 865
TfiI GAWTC 2 cut(s) 1423, 1537
Tru1I TTAA 6 cut(s) 42, 251, 258, 1131, 1253, 1553
Tru9I TTAA 6 cut(s) 42, 251, 258, 1131, 1253, 1553
TscAI CASTG 2 cut(s) 798, 1222
TseI GCWGC 6 cut(s) 623, 635, 1157, 1184, 1432, 1465
TspRI CASTG 2 cut(s) 798, 1222
VpaK11BI GGWCC 2 cut(s) 352, 1438
XagI CCTNNNNNAGG 2 cut(s) 359, 983
XapI RAATTY 3 cut(s) 772, 816, 1112
XceI RCATGY 1 cut(s) 1072
XcmI CCANNNNNNNNNTGG 1 cut(s) 1448
XspI CTAG 3 cut(s) 204, 1154, 1319
Zsp2I ATGCAT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.