Rroxscaffold_5G00340680

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
9165232 .. 9170952
5721 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00340680.1

Sequence Viewer

Length: 1662 bp
ATGGCCTCCACACTTTTCAGAAGCTTTCAAACCCACCCTTTTGTGTTCCATCCCACTACAGTAAGAAGAAAGAATGTTCTTTTGTATTGCACAATGAGAAGTGAACAAACCCAGACAGCCACCCAAGAGAAGGTTAAGCCACAAGTGAAAGTTTCTAACTTGAACCCGAATAAGAAACTGGGGAATATCTCGAAGGACTATGAAGCAGTCATAGGTATCGAAACCCATGTCCAGCTGTCCACTCAGACCAAGGCCTTTTGTAGTTGCCCTTATAATTATGGCTCTCAACCAAACACTAGTATTTGCCCCATTTGTATGGGTCTGCCTGGTGCTTTACCGATTTTGAACTTTAAGGTCATTGAGTCTGCTGTGAAGGTTGGACTTGCACTCAATTGCAAATTGGCAATGAACTCGAAGTTTGATCGGAAACAATACTTTTATGCGGACCTTCCAAAGGGTTACCAAATATCCCAGTTTGATGTTCCAATTGCGACTGGTGGCTACATTGATTTGGATATTCCAGTAGAGTTTGGTGGTGGGCATAGGAAGTTCGGCATTACAAGAGTTCACATGGAAGAGGATGCAGGGAAGCTGATGCATTCAGACGATGGAAGTTACTCACAGGAAAGTACCTTTCGCTTTGTTGATCTAAATAGAGCGGGTGTGCCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAAATGGTATTGAAGCTGCAGAATATGCTGCAGAAATACAGAGGGTGGTTCGGTATTTGGGAGTGAGTAATGGCAATATGCAAGAAGGTTCACTTCGTTGTGATGTCAATGTTTCTGTTCGACCAATTGGGCAATTACAGTTTGGGACGAAGGCAAGTAGCTTTTACTTATTGATTTATTGTGTTATGAGCAGGGCAATTGATTATGAAATTTCGAGGCAGGTGCTTCTTCATAGTCAAGGCCAAGACAAAGAAATTGTACAGGAAACACGGCTATGGGAAGAAGGAGCTCAGAAAACAGTTACAATGAGGAAGAAAGAAGGACTATCTGATTACCGATATTTTCCTGAACCAGACCTTCCAGGAGTTTTCCTCACCCAGGACTATGTTGATGGTATTCATAACTCTTTGCCTGAACTTCCAGAAATGAAGCGTCGGAGGTATGAAAAGATGGGCCTAAGCATGCAGGACATTCTTTTCCTTGCTAACGACATGAATGTTGCAGAATTTTTTGATACTACTATTAAGAAGGGTGCTGATGCGAAGCTAGCTGCCAACTGGATAATGAGTGATATTGCTGCCTATATGAAAAATGAAGAGTTGTCCATCACTGAGGTCAAGCTTTCCCCTCAAGAGTTGGCTGAGTTAATAGCTTCCATAAAAGATGGGACTATTAGTGGGAAGATAGGGAAACAGATATTGTTTGAGCTTCTAGCAAAAGGTGGTACTGTGAAGGGAATGATAGAAGAAAAAGATTTAGTTCAGGCAAGTTATCCCGCTGAGATTGAGAAAATGGTGGAAAAGGTATTGTCAGAGAATCCAAAGCAGCTGGACCAATATCGTGGTGGAAAGACTAAGCTGCAAGGTTATTTTGCCGGCCAGATAATGAAACTGTCAAAAGGAAAAGCAAATCCAGGGCTTCTAAACAAGATTCTGTTAGAGAAATTAAATGCCCAAAGCTGA

Protein Analysis

553

Amino Acids

61.93

Weight (kDa)

7.94

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GatB_N PF02934 70 - 363 1.9e-104 GatB/GatE catalytic domain
GatB_Yqey PF02637 402 - 549 1.3e-50 GatB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AarI CACCTGC 1 cut(s) 910
Acc36I ACCTGC 1 cut(s) 910
AccBSI CCGCTC 1 cut(s) 659
AciI CCGC 3 cut(s) 443, 659, 1476
AcoI YGGCCR 1 cut(s) 1576
AcsI RAATTY 2 cut(s) 909, 1205
AfaI GTAC 3 cut(s) 631, 960, 1426
AfiI CCNNNNNNNGG 3 cut(s) 130, 454, 1078
AgsI TTSAA 4 cut(s) 29, 163, 346, 713
AhlI ACTAGT 1 cut(s) 296
AjnI CCWGG 4 cut(s) 325, 1060, 1077, 1612
Alw21I GWGCWC 1 cut(s) 991
AoxI GGCC 5 cut(s) 3, 252, 940, 1153, 1576
ApeKI GCWGC 6 cut(s) 716, 728, 1250, 1277, 1525, 1558
ApoI RAATTY 2 cut(s) 909, 1205
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspS9I GGNCC 3 cut(s) 445, 1153, 1531
AsuHPI GGTGA 1 cut(s) 1066
AsuNHI GCTAGC 1 cut(s) 1246
AvaII GGWCC 2 cut(s) 445, 1531
BaeGI GKGCMC 1 cut(s) 669
BanII GRGCYC 1 cut(s) 991
Bbv12I GWGCWC 1 cut(s) 991
BbvI GCAGC 6 cut(s) 703, 715, 1237, 1264, 1537, 1545
BccI CCATC 6 cut(s) 57, 602, 1085, 1144, 1313, 1358
BceAI ACGGC 1 cut(s) 986
BcgI CGANNNNNNTGC 4 cut(s) 393, 427, 904, 938
BciT130I CCWGG 4 cut(s) 327, 1062, 1079, 1614
BcuI ACTAGT 1 cut(s) 296
BfaI CTAG 3 cut(s) 297, 1247, 1412
BfmI CTRYAG 3 cut(s) 57, 717, 729
BfuAI ACCTGC 1 cut(s) 910
BisI GCNGC 6 cut(s) 717, 729, 1251, 1278, 1526, 1559
BlsI GCNGC 6 cut(s) 718, 730, 1252, 1279, 1527, 1560
Bme1390I CCNGG 4 cut(s) 327, 1062, 1079, 1614
Bme18I GGWCC 2 cut(s) 445, 1531
BmgT120I GGNCC 3 cut(s) 445, 1153, 1531
BmrFI CCNGG 4 cut(s) 327, 1062, 1079, 1614
BmrI ACTGGG 2 cut(s) 188, 466
BmsI GCATC 3 cut(s) 571, 585, 1228
BmtI GCTAGC 1 cut(s) 1250
BmuI ACTGGG 2 cut(s) 188, 466
BplI GAGNNNNNCTC 2 cut(s) 1056, 1088
Bpu10I CCTNAGC 1 cut(s) 1157
BpuEI CTTGAG 2 cut(s) 695, 1314
BsaJI CCNNGG 3 cut(s) 249, 1077, 1613
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 454, 1078
Bse118I RCCGGY 1 cut(s) 1574
Bse1I ACTGG 5 cut(s) 183, 472, 499, 521, 1262
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 4 cut(s) 327, 1062, 1079, 1614
BseDI CCNNGG 3 cut(s) 249, 1077, 1613
BseGI GGATG 2 cut(s) 49, 586
BseLI CCNNNNNNNGG 3 cut(s) 130, 454, 1078
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 5 cut(s) 257, 1004, 1302, 1332, 1470
BseNI ACTGG 5 cut(s) 183, 472, 499, 521, 1262
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 6 cut(s) 703, 715, 1237, 1264, 1537, 1545
BshFI GGCC 5 cut(s) 5, 254, 942, 1155, 1578
BsiHKAI GWGCWC 1 cut(s) 991
BsiSI CCGG 1 cut(s) 1575
BslFI GGGAC 2 cut(s) 859, 1381
BslI CCNNNNNNNGG 3 cut(s) 130, 454, 1078
BsmFI GGGAC 2 cut(s) 859, 1381
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 5 cut(s) 5, 254, 942, 1155, 1578
Bsp1286I GDGCHC 2 cut(s) 669, 991
Bsp1407I TGTACA 1 cut(s) 958
Bsp143I GATC 2 cut(s) 421, 646
BspACI CCGC 3 cut(s) 443, 659, 1476
BspANI GGCC 5 cut(s) 5, 254, 942, 1155, 1578
BspCNI CTCAG 5 cut(s) 256, 1003, 1303, 1333, 1471
BspMAI CTGCAG 2 cut(s) 721, 733
BspMI ACCTGC 1 cut(s) 910
BspOI GCTAGC 1 cut(s) 1250
BsrBI CCGCTC 1 cut(s) 659
BsrDI GCAATG 1 cut(s) 411
BsrFI RCCGGY 1 cut(s) 1574
BsrGI TGTACA 1 cut(s) 958
BsrI ACTGG 5 cut(s) 183, 472, 499, 521, 1262
BssAI RCCGGY 1 cut(s) 1574
BssECI CCNNGG 3 cut(s) 249, 1077, 1613
BssMI GATC 2 cut(s) 421, 646
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 4 cut(s) 327, 1062, 1079, 1614
Bst4CI ACNGT 5 cut(s) 61, 840, 1000, 1429, 1593
Bst6I CTCTTC 2 cut(s) 570, 1290
BstAPI GCANNNNNTGC 1 cut(s) 725
BstAUI TGTACA 1 cut(s) 958
BstC8I GCNNGC 3 cut(s) 1163, 1248, 1576
BstDEI CTNAG 7 cut(s) 243, 990, 1157, 1311, 1341, 1479, 1554
BstEII GGTNACC 1 cut(s) 458
BstENI CCTNNNNNAGG 2 cut(s) 452, 1076
BstF5I GGATG 2 cut(s) 49, 586
BstKTI GATC 2 cut(s) 424, 649
BstMBI GATC 2 cut(s) 421, 646
BstMWI GCNNNNNNNGC 2 cut(s) 725, 1247
BstNI CCWGG 4 cut(s) 327, 1062, 1079, 1614
BstNSI RCATGY 1 cut(s) 1165
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 4 cut(s) 325, 1060, 1077, 1612
BstSFI CTRYAG 3 cut(s) 57, 717, 729
BstSLI GKGCMC 1 cut(s) 669
BstV1I GCAGC 6 cut(s) 703, 715, 1237, 1264, 1537, 1545
BstXI CCANNNNNNTGG 2 cut(s) 316, 1541
BsuRI GGCC 5 cut(s) 5, 254, 942, 1155, 1578
BtsCI GGATG 2 cut(s) 49, 586
BtsIMutI CAGTG 1 cut(s) 1308
BveI ACCTGC 1 cut(s) 910
Cac8I GCNNGC 3 cut(s) 1163, 1248, 1576
Cfr10I RCCGGY 1 cut(s) 1574
Cfr13I GGNCC 3 cut(s) 445, 1153, 1531
CseI GACGC 1 cut(s) 1121
Csp6I GTAC 3 cut(s) 630, 959, 1425
CviAII CATG 4 cut(s) 227, 571, 1162, 1192
CviQI GTAC 3 cut(s) 630, 959, 1425
DdeI CTNAG 7 cut(s) 243, 990, 1157, 1311, 1341, 1479, 1554
DpnI GATC 2 cut(s) 423, 648
DpnII GATC 2 cut(s) 421, 646
EaeI YGGCCR 1 cut(s) 1576
Eam1104I CTCTTC 2 cut(s) 570, 1290
EarI CTCTTC 2 cut(s) 570, 1290
Ecl136II GAGCTC 1 cut(s) 989
Eco130I CCWWGG 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 991
Eco47I GGWCC 2 cut(s) 445, 1531
Eco53kI GAGCTC 1 cut(s) 989
Eco91I GGTNACC 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 989
EcoNI CCTNNNNNAGG 2 cut(s) 452, 1076
EcoO65I GGTNACC 1 cut(s) 458
EcoRII CCWGG 4 cut(s) 325, 1060, 1077, 1612
EcoT14I CCWWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 600
EcoT38I GRGCYC 1 cut(s) 991
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 4 cut(s) 230, 574, 1165, 1195
FalI AAGNNNNNCTT 2 cut(s) 777, 809
FaqI GGGAC 2 cut(s) 859, 1381
FatI CATG 4 cut(s) 226, 570, 1161, 1191
FauI CCCGC 2 cut(s) 652, 1483
Fnu4HI GCNGC 6 cut(s) 717, 729, 1251, 1278, 1526, 1559
FokI GGATG 2 cut(s) 36, 593
FriOI GRGCYC 1 cut(s) 991
Fsp4HI GCNGC 6 cut(s) 717, 729, 1251, 1278, 1526, 1559
FspBI CTAG 3 cut(s) 297, 1247, 1412
GluI GCNGC 6 cut(s) 717, 729, 1251, 1278, 1526, 1559
HaeIII GGCC 5 cut(s) 5, 254, 942, 1155, 1578
HapII CCGG 1 cut(s) 1575
HgaI GACGC 1 cut(s) 1121
Hin1II CATG 4 cut(s) 230, 574, 1165, 1195
HindIII AAGCTT 2 cut(s) 22, 1319
HinfI GANTC 3 cut(s) 362, 1516, 1630
HpaII CCGG 1 cut(s) 1575
HphI GGTGA 1 cut(s) 1066
Hpy166II GTNNAC 4 cut(s) 104, 240, 568, 791
Hpy188I TCNGA 9 cut(s) 20, 246, 426, 604, 688, 993, 1030, 1137, 1513
Hpy188III TCNNGA 4 cut(s) 190, 1046, 1121, 1331
Hpy8I GTNNAC 4 cut(s) 104, 240, 568, 791
Hpy99I CGWCG 1 cut(s) 1137
HpyCH4III ACNGT 5 cut(s) 61, 840, 1000, 1429, 1593
HpyF10VI GCNNNNNNNGC 2 cut(s) 725, 1247
HpyF3I CTNAG 7 cut(s) 243, 990, 1157, 1311, 1341, 1479, 1554
Hsp92II CATG 4 cut(s) 230, 574, 1165, 1195
KroI GCCGGC 1 cut(s) 1574
KroNI GCCGGC 1 cut(s) 1576
Kzo9I GATC 2 cut(s) 421, 646
LmnI GCTCC 1 cut(s) 986
Lsp1109I GCAGC 6 cut(s) 703, 715, 1237, 1264, 1537, 1545
LweI GCATC 3 cut(s) 571, 585, 1228
MaeI CTAG 3 cut(s) 297, 1247, 1412
MaeIII GTNAC 3 cut(s) 458, 614, 1000
MalI GATC 2 cut(s) 423, 648
MbiI CCGCTC 1 cut(s) 659
MboI GATC 2 cut(s) 421, 646
MboII GAAGA 8 cut(s) 78, 587, 920, 992, 1024, 1307, 1393, 1457
MfeI CAATTG 4 cut(s) 391, 486, 825, 897
MhlI GDGCHC 2 cut(s) 669, 991
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 2 cut(s) 358, 1115
MnlI CCTC 9 cut(s) 16, 571, 735, 909, 1002, 1082, 1131, 1306, 1338
Mph1103I ATGCAT 1 cut(s) 600
MroNI GCCGGC 1 cut(s) 1574
MseI TTAA 5 cut(s) 135, 351, 1224, 1346, 1646
MslI CAYNNNNRTG 2 cut(s) 314, 973
MspA1I CMGCKG 3 cut(s) 235, 1478, 1528
MspI CCGG 1 cut(s) 1575
MspR9I CCNGG 4 cut(s) 327, 1062, 1079, 1614
MunI CAATTG 4 cut(s) 391, 486, 825, 897
Mva1269I GAATGC 1 cut(s) 598
MvaI CCWGG 4 cut(s) 327, 1062, 1079, 1614
MwoI GCNNNNNNNGC 2 cut(s) 725, 1247
NaeI GCCGGC 1 cut(s) 1576
NdeII GATC 2 cut(s) 421, 646
NgoMIV GCCGGC 1 cut(s) 1574
NheI GCTAGC 1 cut(s) 1246
NlaIII CATG 4 cut(s) 230, 574, 1165, 1195
NsiI ATGCAT 1 cut(s) 600
NspI RCATGY 1 cut(s) 1165
PaeI GCATGC 1 cut(s) 1165
PaqCI CACCTGC 1 cut(s) 910
PceI AGGCCT 1 cut(s) 254
PctI GAATGC 1 cut(s) 598
PdiI GCCGGC 1 cut(s) 1576
PfeI GAWTC 2 cut(s) 1516, 1630
PfoI TCCNGGA 1 cut(s) 1060
PkrI GCNGC 6 cut(s) 718, 730, 1252, 1279, 1527, 1560
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PsiI TTATAA 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 991
Psp6I CCWGG 4 cut(s) 325, 1060, 1077, 1612
PspEI GGTNACC 1 cut(s) 458
PspGI CCWGG 4 cut(s) 325, 1060, 1077, 1612
PspPI GGNCC 3 cut(s) 445, 1153, 1531
PstI CTGCAG 2 cut(s) 721, 733
PvuII CAGCTG 2 cut(s) 235, 1528
RsaI GTAC 3 cut(s) 631, 960, 1426
RsaNI GTAC 3 cut(s) 630, 959, 1425
RseI CAYNNNNRTG 2 cut(s) 314, 973
SacI GAGCTC 1 cut(s) 991
SaqAI TTAA 5 cut(s) 135, 351, 1224, 1346, 1646
SatI GCNGC 6 cut(s) 717, 729, 1251, 1278, 1526, 1559
Sau3AI GATC 2 cut(s) 421, 646
Sau96I GGNCC 3 cut(s) 445, 1153, 1531
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 4 cut(s) 327, 1062, 1079, 1614
SduI GDGCHC 2 cut(s) 669, 991
SfaNI GCATC 3 cut(s) 571, 585, 1228
SfcI CTRYAG 3 cut(s) 57, 717, 729
SinI GGWCC 2 cut(s) 445, 1531
SmiMI CAYNNNNRTG 2 cut(s) 314, 973
SmlI CTYRAG 2 cut(s) 674, 1329
SmoI CTYRAG 2 cut(s) 674, 1329
SpeI ACTAGT 1 cut(s) 296
SphI GCATGC 1 cut(s) 1165
SseBI AGGCCT 1 cut(s) 254
SsiI CCGC 3 cut(s) 443, 659, 1476
SspMI CTAG 3 cut(s) 297, 1247, 1412
SstI GAGCTC 1 cut(s) 991
StuI AGGCCT 1 cut(s) 254
StyD4I CCNGG 4 cut(s) 325, 1060, 1077, 1612
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 5 cut(s) 61, 840, 1000, 1429, 1593
TaqI TCGA 5 cut(s) 191, 219, 413, 820, 914
TatI WGTACW 1 cut(s) 958
TfiI GAWTC 2 cut(s) 1516, 1630
Tru1I TTAA 5 cut(s) 135, 351, 1224, 1346, 1646
Tru9I TTAA 5 cut(s) 135, 351, 1224, 1346, 1646
TscAI CASTG 1 cut(s) 1315
TseI GCWGC 6 cut(s) 716, 728, 1250, 1277, 1525, 1558
TspRI CASTG 1 cut(s) 1315
VpaK11BI GGWCC 2 cut(s) 445, 1531
XagI CCTNNNNNAGG 2 cut(s) 452, 1076
XapI RAATTY 2 cut(s) 909, 1205
XceI RCATGY 1 cut(s) 1165
XcmI CCANNNNNNNNNTGG 1 cut(s) 1541
XspI CTAG 3 cut(s) 297, 1247, 1412
Zsp2I ATGCAT 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.