Rw4G005170

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
10527417 .. 10533671
6255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G005170.1

Sequence Viewer

Length: 1698 bp
ATGATGGGATTTATTACATTACTGGTTACTCCCAAGTCCCAAATGACCCATTTCAACTTTTGCTGTCCTTTCCATATAATTTTGAAGCTTTCAAACCCACCCTTTTGTTTCCATCCCACTACATTACTTAGAAGAAAGAATGTTCTTTTGTATTGCACAATGAGAAGTGAACAAACCCAGACAGCCACCCAAGAGAAGGTTAAGCCACAAGTGAAAGTTTCTAACTTGAACCCGAATAAGAAACTGGAGAATATCTCGAAGGACTATGAAGCAGTCATAGGTATCGAAACCCATGTCCAGCTATCCACTCAGACCAAGGCCTTCTGTAGTTGCCCTTATAATTATGGCTCTCAACCAAACACTAGTATTTGCCCCATTTGTATGGGTCTGCCTGGTGCTTTACCGATTTTGAACTTTAAGGTCATTGAGTCTGCTGTGAAAGTTGGACTTGCACTCAATTGTAAATTGGCAATGAACTCGAAGTTTGATCGGAAACAATACTTTTACGCGGACCTTCCAAAGGGTTACCAAATATCCCAGTTTGATGTTCCAATTGCAACTGGTGGCTACATTGATTTGGATATTCCAGTAGAGTTTGGAGGTGGGCATAGGAAGTTCGGCATTACAAGAGTTCACATGGAAGAGGATGCAGGGAAGCTGATGCATTCAGACGACGGAAGTTACTCACAGGAAACGGGGGTGCCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAAATGGTATTGAAGCTGCAGAATATGCTGCAGAAATACAGAGGGTGGTTCGGTATTTGGGAGTGAGTAATGGCAATATGCAAGAAGGTTCACTTCGTTGTGATGTCAATGTTTCTGTTCGACCAATTGGGCAATTACAGTTTGGGACGAAGGTGGAGATAAAAAATTTGAACGCTTTTTCGGCAGTGAGCAGGGCAATTGATTATGAAATTTCGAGGCAGGTGCTTCTTCATAGTCAAGGCCAAGACAAAGAAATTGTACAGGAAACACGGCTATGGGAAGAAGGAGCTCAGAAAACAGTTACAATGAGGAAGAAAGAAGGACTATCTGATTACCGATATTTTCCTGAACCAGACCTTCCAGGAGTTTTCCTCACCCAGGACTATGTTGATGGTATTCATAACTCTTTGCCTGAACTTCCAGAAATGAAGCGTCGGAGGTATGAAAAGATGGGCCTAAGCATGCAGGACATTCTTTTCCTTGCTAACGACATGAATGTTGCAGAATTTTTTGATACTACTATTAAGAAGGGTGCTGAGGCGAAGCTAGCTGCCAACTGGATAATGAGTGATATTGCTGCCTATATGAAAAATGAAGAGTTGTCCATCACTGAGGTCAAGCTTTCCCCTCAAGAGTTGGCTGAGTTAATAGCTTCCATAAAAGATGGGACTATTAGTGGGAAGATAGGGAAACAGATATTGTTTGAGCTTCTAGCAAAGGGTGGTACTGTGAAGGGACTGATAGAAGAAAAAGATTTAGTTCAGATTGTAGATCCTGCTGAGATTGAGAAAATGGTGGAAAAGGTGTTGTCAGAGAATCCAAAGCAGCTGGACCAATATCGCAGTGGAAAGACTAAGCTGCAAGGTTTTTTTGCTGGCCAGATAATGAAACTTTCAAAAGGAAAAGCAAATCCCGGGCTTCTAAACAAGATTCTGTTAGAGAAATTAAATGCCAAAAGCTGA

Protein Analysis

565

Amino Acids

63.22

Weight (kDa)

7.52

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GatB_N PF02934 92 - 375 5.4e-109 GatB/GatE catalytic domain
GatB_Yqey PF02637 414 - 561 5.1e-52 GatB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
AarI CACCTGC 1 cut(s) 946
Acc36I ACCTGC 1 cut(s) 946
AccB1I GGYRCC 1 cut(s) 700
AccII CGCG 1 cut(s) 509
AciI CCGC 1 cut(s) 509
AclWI GGATC 1 cut(s) 1502
AcoI YGGCCR 1 cut(s) 1612
AcsI RAATTY 3 cut(s) 901, 945, 1241
AfaI GTAC 2 cut(s) 996, 1462
AfiI CCNNNNNNNGG 3 cut(s) 196, 520, 1114
AgsI TTSAA 8 cut(s) 55, 85, 93, 229, 412, 749, 907, 1632
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 3 cut(s) 391, 1096, 1113
Alw21I GWGCWC 1 cut(s) 1027
AlwI GGATC 1 cut(s) 1502
Ama87I CYCGRG 1 cut(s) 1649
AoxI GGCC 4 cut(s) 318, 976, 1189, 1612
ApeKI GCWGC 6 cut(s) 752, 764, 1286, 1313, 1561, 1594
ApoI RAATTY 3 cut(s) 901, 945, 1241
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AspS9I GGNCC 3 cut(s) 511, 1189, 1567
AsuC2I CCSGG 2 cut(s) 1650, 1651
AsuHPI GGTGA 1 cut(s) 1102
AsuNHI GCTAGC 1 cut(s) 1282
AvaI CYCGRG 1 cut(s) 1649
AvaII GGWCC 2 cut(s) 511, 1567
BaeGI GKGCMC 1 cut(s) 705
BalI TGGCCA 1 cut(s) 1614
BanI GGYRCC 1 cut(s) 700
BanII GRGCYC 1 cut(s) 1027
Bbv12I GWGCWC 1 cut(s) 1027
BbvCI CCTCAGC 1 cut(s) 1272
BbvI GCAGC 6 cut(s) 739, 751, 1273, 1300, 1573, 1581
BccI CCATC 5 cut(s) 120, 1121, 1180, 1349, 1394
BceAI ACGGC 1 cut(s) 1022
BcgI CGANNNNNNTGC 4 cut(s) 459, 493, 940, 974
BciT130I CCWGG 3 cut(s) 393, 1098, 1115
BcnI CCSGG 2 cut(s) 1650, 1651
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 3 cut(s) 363, 1283, 1448
BfmI CTRYAG 3 cut(s) 325, 753, 765
BfuAI ACCTGC 1 cut(s) 946
BisI GCNGC 6 cut(s) 753, 765, 1287, 1314, 1562, 1595
BlsI GCNGC 6 cut(s) 754, 766, 1288, 1315, 1563, 1596
Bme1390I CCNGG 5 cut(s) 393, 1098, 1115, 1650, 1651
Bme18I GGWCC 2 cut(s) 511, 1567
BmeT110I CYCGRG 1 cut(s) 1649
BmgT120I GGNCC 3 cut(s) 511, 1189, 1567
BmiI GGNNCC 1 cut(s) 702
BmrFI CCNGG 5 cut(s) 393, 1098, 1115, 1650, 1651
BmrI ACTGGG 1 cut(s) 532
BmsI GCATC 2 cut(s) 637, 651
BmtI GCTAGC 1 cut(s) 1286
BmuI ACTGGG 1 cut(s) 532
BplI GAGNNNNNCTC 4 cut(s) 239, 271, 1092, 1124
BpmI CTGGAG 1 cut(s) 266
Bpu10I CCTNAGC 2 cut(s) 1193, 1272
BpuEI CTTGAG 2 cut(s) 731, 1350
BpuMI CCSGG 2 cut(s) 1650, 1651
BsaJI CCNNGG 3 cut(s) 315, 1113, 1649
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 520, 1114
Bse1I ACTGG 6 cut(s) 27, 249, 538, 565, 587, 1298
Bse3DI GCAATG 1 cut(s) 477
BseBI CCWGG 3 cut(s) 393, 1098, 1115
BseDI CCNNGG 3 cut(s) 315, 1113, 1649
BseGI GGATG 2 cut(s) 112, 652
BseLI CCNNNNNNNGG 3 cut(s) 196, 520, 1114
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 6 cut(s) 323, 1040, 1263, 1338, 1368, 1506
BseNI ACTGG 6 cut(s) 27, 249, 538, 565, 587, 1298
BseSI GKGCMC 1 cut(s) 705
BseXI GCAGC 6 cut(s) 739, 751, 1273, 1300, 1573, 1581
Bsh1236I CGCG 1 cut(s) 509
BshFI GGCC 4 cut(s) 320, 978, 1191, 1614
BshNI GGYRCC 1 cut(s) 700
BsiHKAI GWGCWC 1 cut(s) 1027
BsiHKCI CYCGRG 1 cut(s) 1649
BsiSI CCGG 1 cut(s) 1650
BslFI GGGAC 4 cut(s) 22, 895, 1417, 1485
BslI CCNNNNNNNGG 3 cut(s) 196, 520, 1114
BsmFI GGGAC 4 cut(s) 22, 895, 1417, 1485
BsmI GAATGC 1 cut(s) 664
BsnI GGCC 4 cut(s) 320, 978, 1191, 1614
BsoBI CYCGRG 1 cut(s) 1649
Bsp1286I GDGCHC 2 cut(s) 705, 1027
Bsp1407I TGTACA 1 cut(s) 994
Bsp143I GATC 2 cut(s) 487, 1507
BspACI CCGC 1 cut(s) 509
BspANI GGCC 4 cut(s) 320, 978, 1191, 1614
BspCNI CTCAG 6 cut(s) 322, 1039, 1264, 1339, 1369, 1507
BspFNI CGCG 1 cut(s) 509
BspLI GGNNCC 1 cut(s) 702
BspMAI CTGCAG 2 cut(s) 757, 769
BspMI ACCTGC 1 cut(s) 946
BspOI GCTAGC 1 cut(s) 1286
BspPI GGATC 1 cut(s) 1502
BspT107I GGYRCC 1 cut(s) 700
BsrDI GCAATG 1 cut(s) 477
BsrGI TGTACA 1 cut(s) 994
BsrI ACTGG 6 cut(s) 27, 249, 538, 565, 587, 1298
BssECI CCNNGG 3 cut(s) 315, 1113, 1649
BssMI GATC 2 cut(s) 487, 1507
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 3 cut(s) 393, 1098, 1115
Bst4CI ACNGT 3 cut(s) 876, 1036, 1465
Bst6I CTCTTC 2 cut(s) 636, 1326
BstAPI GCANNNNNTGC 1 cut(s) 761
BstAUI TGTACA 1 cut(s) 994
BstC8I GCNNGC 3 cut(s) 1199, 1284, 1612
BstDEI CTNAG 9 cut(s) 128, 309, 1026, 1193, 1272, 1347, 1377, 1515, 1590
BstEII GGTNACC 1 cut(s) 524
BstENI CCTNNNNNAGG 2 cut(s) 518, 1112
BstF5I GGATG 2 cut(s) 112, 652
BstFNI CGCG 1 cut(s) 509
BstKTI GATC 2 cut(s) 490, 1510
BstMBI GATC 2 cut(s) 487, 1507
BstMWI GCNNNNNNNGC 3 cut(s) 761, 917, 1283
BstNI CCWGG 3 cut(s) 393, 1098, 1115
BstNSI RCATGY 1 cut(s) 1201
BstPI GGTNACC 1 cut(s) 524
BstSCI CCNGG 5 cut(s) 391, 1096, 1113, 1648, 1649
BstSFI CTRYAG 3 cut(s) 325, 753, 765
BstSLI GKGCMC 1 cut(s) 705
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 6 cut(s) 739, 751, 1273, 1300, 1573, 1581
BstX2I RGATCY 1 cut(s) 1507
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 1 cut(s) 1507
BsuRI GGCC 4 cut(s) 320, 978, 1191, 1614
BtsCI GGATG 2 cut(s) 112, 652
BtsI GCAGTG 2 cut(s) 927, 1585
BtsIMutI CAGTG 3 cut(s) 927, 1344, 1585
BveI ACCTGC 1 cut(s) 946
Cac8I GCNNGC 3 cut(s) 1199, 1284, 1612
Cfr13I GGNCC 3 cut(s) 511, 1189, 1567
Cfr9I CCCGGG 1 cut(s) 1649
CseI GACGC 1 cut(s) 1157
Csp6I GTAC 2 cut(s) 995, 1461
CviAII CATG 4 cut(s) 293, 637, 1198, 1228
CviQI GTAC 2 cut(s) 995, 1461
DdeI CTNAG 9 cut(s) 128, 309, 1026, 1193, 1272, 1347, 1377, 1515, 1590
DpnI GATC 2 cut(s) 489, 1509
DpnII GATC 2 cut(s) 487, 1507
EaeI YGGCCR 1 cut(s) 1612
Eam1104I CTCTTC 2 cut(s) 636, 1326
EarI CTCTTC 2 cut(s) 636, 1326
Ecl136II GAGCTC 1 cut(s) 1025
Eco130I CCWWGG 1 cut(s) 315
Eco147I AGGCCT 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 1027
Eco47I GGWCC 2 cut(s) 511, 1567
Eco53kI GAGCTC 1 cut(s) 1025
Eco88I CYCGRG 1 cut(s) 1649
Eco91I GGTNACC 1 cut(s) 524
EcoICRI GAGCTC 1 cut(s) 1025
EcoNI CCTNNNNNAGG 2 cut(s) 518, 1112
EcoO65I GGTNACC 1 cut(s) 524
EcoRII CCWGG 3 cut(s) 391, 1096, 1113
EcoT14I CCWWGG 1 cut(s) 315
EcoT22I ATGCAT 1 cut(s) 666
EcoT38I GRGCYC 1 cut(s) 1027
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 4 cut(s) 296, 640, 1201, 1231
FalI AAGNNNNNCTT 4 cut(s) 432, 464, 813, 845
FaqI GGGAC 4 cut(s) 22, 895, 1417, 1485
FatI CATG 4 cut(s) 292, 636, 1197, 1227
Fnu4HI GCNGC 6 cut(s) 753, 765, 1287, 1314, 1562, 1595
FokI GGATG 2 cut(s) 99, 659
FriOI GRGCYC 1 cut(s) 1027
Fsp4HI GCNGC 6 cut(s) 753, 765, 1287, 1314, 1562, 1595
FspBI CTAG 3 cut(s) 363, 1283, 1448
GluI GCNGC 6 cut(s) 753, 765, 1287, 1314, 1562, 1595
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 4 cut(s) 320, 978, 1191, 1614
HapII CCGG 1 cut(s) 1650
HgaI GACGC 1 cut(s) 1157
Hin1II CATG 4 cut(s) 296, 640, 1201, 1231
HindIII AAGCTT 2 cut(s) 86, 1355
HinfI GANTC 3 cut(s) 428, 1552, 1666
HpaII CCGG 1 cut(s) 1650
HphI GGTGA 1 cut(s) 1102
Hpy166II GTNNAC 3 cut(s) 170, 634, 827
Hpy188I TCNGA 9 cut(s) 312, 492, 670, 724, 1029, 1066, 1173, 1500, 1549
Hpy188III TCNNGA 4 cut(s) 256, 1082, 1157, 1367
Hpy8I GTNNAC 3 cut(s) 170, 634, 827
Hpy99I CGWCG 2 cut(s) 677, 1173
HpyCH4III ACNGT 3 cut(s) 876, 1036, 1465
HpyF10VI GCNNNNNNNGC 3 cut(s) 761, 917, 1283
HpyF3I CTNAG 9 cut(s) 128, 309, 1026, 1193, 1272, 1347, 1377, 1515, 1590
Hsp92II CATG 4 cut(s) 296, 640, 1201, 1231
Kzo9I GATC 2 cut(s) 487, 1507
LmnI GCTCC 1 cut(s) 1022
Lsp1109I GCAGC 6 cut(s) 739, 751, 1273, 1300, 1573, 1581
LweI GCATC 2 cut(s) 637, 651
MaeI CTAG 3 cut(s) 363, 1283, 1448
MaeIII GTNAC 4 cut(s) 25, 524, 680, 1036
MalI GATC 2 cut(s) 489, 1509
MboI GATC 2 cut(s) 487, 1507
MboII GAAGA 8 cut(s) 144, 653, 956, 1028, 1060, 1343, 1429, 1493
MfeI CAATTG 4 cut(s) 457, 552, 861, 933
MflI RGATCY 1 cut(s) 1507
MhlI GDGCHC 2 cut(s) 705, 1027
MlsI TGGCCA 1 cut(s) 1614
MluNI TGGCCA 1 cut(s) 1614
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 2 cut(s) 424, 1151
Mox20I TGGCCA 1 cut(s) 1614
Mph1103I ATGCAT 1 cut(s) 666
MscI TGGCCA 1 cut(s) 1614
MseI TTAA 5 cut(s) 201, 417, 1260, 1382, 1682
MslI CAYNNNNRTG 2 cut(s) 380, 1009
Msp20I TGGCCA 1 cut(s) 1614
MspA1I CMGCKG 1 cut(s) 1564
MspI CCGG 1 cut(s) 1650
MspR9I CCNGG 5 cut(s) 393, 1098, 1115, 1650, 1651
MunI CAATTG 4 cut(s) 457, 552, 861, 933
Mva1269I GAATGC 1 cut(s) 664
MvaI CCWGG 3 cut(s) 393, 1098, 1115
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 3 cut(s) 761, 917, 1283
NciI CCSGG 2 cut(s) 1650, 1651
NdeII GATC 2 cut(s) 487, 1507
NheI GCTAGC 1 cut(s) 1282
NlaIII CATG 4 cut(s) 296, 640, 1201, 1231
NlaIV GGNNCC 1 cut(s) 702
NsiI ATGCAT 1 cut(s) 666
NspI RCATGY 1 cut(s) 1201
PaeI GCATGC 1 cut(s) 1201
PaqCI CACCTGC 1 cut(s) 946
PceI AGGCCT 1 cut(s) 320
PctI GAATGC 1 cut(s) 664
PfeI GAWTC 2 cut(s) 1552, 1666
PfoI TCCNGGA 1 cut(s) 1096
PkrI GCNGC 6 cut(s) 754, 766, 1288, 1315, 1563, 1596
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PsiI TTATAA 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 1027
Psp6I CCWGG 3 cut(s) 391, 1096, 1113
PspEI GGTNACC 1 cut(s) 524
PspGI CCWGG 3 cut(s) 391, 1096, 1113
PspN4I GGNNCC 1 cut(s) 702
PspPI GGNCC 3 cut(s) 511, 1189, 1567
PstI CTGCAG 2 cut(s) 757, 769
PsuI RGATCY 1 cut(s) 1507
PvuII CAGCTG 1 cut(s) 1564
RsaI GTAC 2 cut(s) 996, 1462
RsaNI GTAC 2 cut(s) 995, 1461
RseI CAYNNNNRTG 2 cut(s) 380, 1009
SacI GAGCTC 1 cut(s) 1027
SaqAI TTAA 5 cut(s) 201, 417, 1260, 1382, 1682
SatI GCNGC 6 cut(s) 753, 765, 1287, 1314, 1562, 1595
Sau3AI GATC 2 cut(s) 487, 1507
Sau96I GGNCC 3 cut(s) 511, 1189, 1567
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 5 cut(s) 393, 1098, 1115, 1650, 1651
SduI GDGCHC 2 cut(s) 705, 1027
SfaNI GCATC 2 cut(s) 637, 651
SfcI CTRYAG 3 cut(s) 325, 753, 765
SinI GGWCC 2 cut(s) 511, 1567
SmaI CCCGGG 1 cut(s) 1651
SmiMI CAYNNNNRTG 2 cut(s) 380, 1009
SmlI CTYRAG 2 cut(s) 710, 1365
SmoI CTYRAG 2 cut(s) 710, 1365
SpeI ACTAGT 1 cut(s) 362
SphI GCATGC 1 cut(s) 1201
SseBI AGGCCT 1 cut(s) 320
SsiI CCGC 1 cut(s) 509
SspMI CTAG 3 cut(s) 363, 1283, 1448
SstI GAGCTC 1 cut(s) 1027
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 5 cut(s) 391, 1096, 1113, 1648, 1649
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 3 cut(s) 876, 1036, 1465
TaqI TCGA 5 cut(s) 257, 285, 479, 856, 950
TatI WGTACW 1 cut(s) 994
TfiI GAWTC 2 cut(s) 1552, 1666
Tru1I TTAA 5 cut(s) 201, 417, 1260, 1382, 1682
Tru9I TTAA 5 cut(s) 201, 417, 1260, 1382, 1682
TscAI CASTG 3 cut(s) 927, 1351, 1585
TseI GCWGC 6 cut(s) 752, 764, 1286, 1313, 1561, 1594
TspGWI ACGGA 1 cut(s) 690
TspMI CCCGGG 1 cut(s) 1649
TspRI CASTG 3 cut(s) 927, 1351, 1585
VpaK11BI GGWCC 2 cut(s) 511, 1567
XagI CCTNNNNNAGG 2 cut(s) 518, 1112
XapI RAATTY 3 cut(s) 901, 945, 1241
XceI RCATGY 1 cut(s) 1201
XcmI CCANNNNNNNNNTGG 1 cut(s) 1577
XmaI CCCGGG 1 cut(s) 1649
XspI CTAG 3 cut(s) 363, 1283, 1448
Zsp2I ATGCAT 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.