RchiOBHm_Chr4g0395911

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
11929879 .. 11934547
4669 bp
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UTR
Exon/CDS
Intron
PRQ36832

Sequence Viewer

Length: 966 bp
ATGAGAAATGGTATTGAAGCTGCAGAATATGCTGCAGAAATACAGAGGGTGGTTCGGTATTTGGGAGTGAGTAATGGCAATATGCAAGAAGGTTCACTTCGTTGTGATGTCAATGTTTCTGTTCGACCAATTGGGCAATTACAGTTTGGGACGAAGGTGGAGATAAAAAATTTGAACGCTTTTTCGGCAGTGAGCAGGGCAATTGATTATGAAATTTCGAGGCAGGTGCTTCTTCATAGTCAAGGCCAAGACAAAGAAATTGTACAGGAAACACGGCTATGGGAAGAAGGAGCTCAGAAAACAGTTACAATGAGGAAGAAAGAAGGACTATCTGATTACCGATATTTTCCTGAACCAGACCTTCCAGGAGTTTTCCTCACCCAGGACTATGTTGATGGTATTCATAACTCTTTGCCTGAACTTCCAGAAATGAAGCGTCGGAGGTATGAAAAGATGGGCCTAAGCATGCAGGACGTTCTTTTCCTTGCTAACGACATGAATGTTGCAGAATTTTTTGATACTACTATTAAGAAGGGTGCTGATGCGAAGCTAGCTGCCAACTGGATAATGAGTGATATTGCTGCCTATATGAAAAATGAAGAGTTGTCCATCACTGAGGTCAAGCTTTCCCCTCAAGAGTTGGCTGAGTTAATAGCTTCCATAAAAGATGGGACTATTAGTGGGAAGATAGGGAAACAGATATTGTTTGAGCTTCTAGCAAAAGGTGGTACTGTGAAGGGACTGATAGAAGAAAAAGATTTAGTTCAGATTGTAGATCCTGCTGAGATTGAGAAAATGGTGGAAAAGGTGTTGTCAGAGAATCCAAAGCAGCTGGACCAATATCGCAGTGGAAAGACTAAGCTGCAAGGTTATTTTGCTGGCCAGATAATGAAACTTTCAAAAGGAAAAGCAAATCCAGGGCTTCTAAACAAGATTCTGTTAGAGAAATTAAATGCCAAAAGCTGA

Protein Analysis

321

Amino Acids

35.96

Weight (kDa)

6.29

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GatB_N PF02934 1 - 131 1.4e-43 GatB/GatE catalytic domain
GatB_Yqey PF02637 170 - 317 1.4e-52 GatB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 214
Acc36I ACCTGC 1 cut(s) 214
AclWI GGATC 1 cut(s) 770
AcoI YGGCCR 1 cut(s) 880
AcsI RAATTY 3 cut(s) 169, 213, 509
AfaI GTAC 2 cut(s) 264, 730
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 3 cut(s) 17, 175, 900
AjnI CCWGG 3 cut(s) 364, 381, 916
Alw21I GWGCWC 1 cut(s) 295
AlwI GGATC 1 cut(s) 770
AoxI GGCC 3 cut(s) 244, 457, 880
ApeKI GCWGC 6 cut(s) 20, 32, 554, 581, 829, 862
ApoI RAATTY 3 cut(s) 169, 213, 509
AspS9I GGNCC 2 cut(s) 457, 835
AsuHPI GGTGA 1 cut(s) 370
AsuNHI GCTAGC 1 cut(s) 550
AvaII GGWCC 1 cut(s) 835
BalI TGGCCA 1 cut(s) 882
BanII GRGCYC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 6 cut(s) 7, 19, 541, 568, 841, 849
BccI CCATC 4 cut(s) 389, 448, 617, 662
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 3 cut(s) 366, 383, 918
BfaI CTAG 2 cut(s) 551, 716
BfmI CTRYAG 2 cut(s) 21, 33
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 6 cut(s) 21, 33, 555, 582, 830, 863
BlsI GCNGC 6 cut(s) 22, 34, 556, 583, 831, 864
Bme1390I CCNGG 3 cut(s) 366, 383, 918
Bme18I GGWCC 1 cut(s) 835
BmgT120I GGNCC 2 cut(s) 457, 835
BmrFI CCNGG 3 cut(s) 366, 383, 918
BmsI GCATC 1 cut(s) 532
BmtI GCTAGC 1 cut(s) 554
BplI GAGNNNNNCTC 2 cut(s) 360, 392
Bpu10I CCTNAGC 1 cut(s) 461
BpuEI CTTGAG 1 cut(s) 618
BsaJI CCNNGG 2 cut(s) 381, 917
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 566
BseBI CCWGG 3 cut(s) 366, 383, 918
BseDI CCNNGG 2 cut(s) 381, 917
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 4 cut(s) 308, 606, 636, 774
BseNI ACTGG 1 cut(s) 566
BseXI GCAGC 6 cut(s) 7, 19, 541, 568, 841, 849
BshFI GGCC 3 cut(s) 246, 459, 882
BsiHKAI GWGCWC 1 cut(s) 295
BslFI GGGAC 3 cut(s) 163, 685, 753
BslI CCNNNNNNNGG 1 cut(s) 382
BsmFI GGGAC 3 cut(s) 163, 685, 753
BsnI GGCC 3 cut(s) 246, 459, 882
Bsp1286I GDGCHC 1 cut(s) 295
Bsp1407I TGTACA 1 cut(s) 262
Bsp143I GATC 1 cut(s) 775
BspANI GGCC 3 cut(s) 246, 459, 882
BspCNI CTCAG 4 cut(s) 307, 607, 637, 775
BspMAI CTGCAG 2 cut(s) 25, 37
BspMI ACCTGC 1 cut(s) 214
BspOI GCTAGC 1 cut(s) 554
BspPI GGATC 1 cut(s) 770
BsrGI TGTACA 1 cut(s) 262
BsrI ACTGG 1 cut(s) 566
BssECI CCNNGG 2 cut(s) 381, 917
BssMI GATC 1 cut(s) 775
Bst2UI CCWGG 3 cut(s) 366, 383, 918
Bst4CI ACNGT 3 cut(s) 144, 304, 733
Bst6I CTCTTC 1 cut(s) 594
BstAPI GCANNNNNTGC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 262
BstC8I GCNNGC 3 cut(s) 467, 552, 880
BstDEI CTNAG 6 cut(s) 294, 461, 615, 645, 783, 858
BstENI CCTNNNNNAGG 1 cut(s) 380
BstKTI GATC 1 cut(s) 778
BstMBI GATC 1 cut(s) 775
BstMWI GCNNNNNNNGC 3 cut(s) 29, 185, 551
BstNI CCWGG 3 cut(s) 366, 383, 918
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 3 cut(s) 364, 381, 916
BstSFI CTRYAG 2 cut(s) 21, 33
BstV1I GCAGC 6 cut(s) 7, 19, 541, 568, 841, 849
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BsuRI GGCC 3 cut(s) 246, 459, 882
BtsI GCAGTG 2 cut(s) 195, 853
BtsIMutI CAGTG 3 cut(s) 195, 612, 853
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 3 cut(s) 467, 552, 880
Cfr13I GGNCC 2 cut(s) 457, 835
CseI GACGC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 263, 729
CviAII CATG 2 cut(s) 466, 496
CviQI GTAC 2 cut(s) 263, 729
DdeI CTNAG 6 cut(s) 294, 461, 615, 645, 783, 858
DpnI GATC 1 cut(s) 777
DpnII GATC 1 cut(s) 775
EaeI YGGCCR 1 cut(s) 880
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Ecl136II GAGCTC 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 835
Eco53kI GAGCTC 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 380
EcoRII CCWGG 3 cut(s) 364, 381, 916
EcoT38I GRGCYC 1 cut(s) 295
FaeI CATG 2 cut(s) 469, 499
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 3 cut(s) 163, 685, 753
FatI CATG 2 cut(s) 465, 495
Fnu4HI GCNGC 6 cut(s) 21, 33, 555, 582, 830, 863
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 6 cut(s) 21, 33, 555, 582, 830, 863
FspBI CTAG 2 cut(s) 551, 716
GluI GCNGC 6 cut(s) 21, 33, 555, 582, 830, 863
HaeIII GGCC 3 cut(s) 246, 459, 882
HgaI GACGC 1 cut(s) 425
Hin1II CATG 2 cut(s) 469, 499
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 2 cut(s) 820, 934
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 5 cut(s) 297, 334, 441, 768, 817
Hpy188III TCNNGA 3 cut(s) 350, 425, 635
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 1 cut(s) 441
HpyAV CCTTC 7 cut(s) 83, 148, 281, 317, 371, 526, 730
HpyCH4III ACNGT 3 cut(s) 144, 304, 733
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 6 cut(s) 23, 35, 85, 469, 506, 865
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 185, 551
HpyF3I CTNAG 6 cut(s) 294, 461, 615, 645, 783, 858
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 2 cut(s) 469, 499
Kzo9I GATC 1 cut(s) 775
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 6 cut(s) 7, 19, 541, 568, 841, 849
LweI GCATC 1 cut(s) 532
MaeI CTAG 2 cut(s) 551, 716
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 777
MboI GATC 1 cut(s) 775
MboII GAAGA 6 cut(s) 224, 296, 328, 611, 697, 761
MfeI CAATTG 2 cut(s) 129, 201
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 1 cut(s) 295
MlsI TGGCCA 1 cut(s) 882
MluCI AATT 8 cut(s) 129, 137, 169, 201, 213, 258, 509, 947
MluNI TGGCCA 1 cut(s) 882
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 7 cut(s) 39, 213, 306, 386, 435, 610, 642
Mox20I TGGCCA 1 cut(s) 882
MscI TGGCCA 1 cut(s) 882
MseI TTAA 3 cut(s) 528, 650, 950
MslI CAYNNNNRTG 1 cut(s) 277
Msp20I TGGCCA 1 cut(s) 882
MspA1I CMGCKG 1 cut(s) 832
MspR9I CCNGG 3 cut(s) 366, 383, 918
MunI CAATTG 2 cut(s) 129, 201
MvaI CCWGG 3 cut(s) 366, 383, 918
MwoI GCNNNNNNNGC 3 cut(s) 29, 185, 551
NdeII GATC 1 cut(s) 775
NheI GCTAGC 1 cut(s) 550
NlaIII CATG 2 cut(s) 469, 499
NspI RCATGY 1 cut(s) 469
PaeI GCATGC 1 cut(s) 469
PaqCI CACCTGC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 820, 934
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 6 cut(s) 22, 34, 556, 583, 831, 864
Psp124BI GAGCTC 1 cut(s) 295
Psp6I CCWGG 3 cut(s) 364, 381, 916
PspGI CCWGG 3 cut(s) 364, 381, 916
PspPI GGNCC 2 cut(s) 457, 835
PstI CTGCAG 2 cut(s) 25, 37
PsuI RGATCY 1 cut(s) 775
PvuII CAGCTG 1 cut(s) 832
RsaI GTAC 2 cut(s) 264, 730
RsaNI GTAC 2 cut(s) 263, 729
RseI CAYNNNNRTG 1 cut(s) 277
SacI GAGCTC 1 cut(s) 295
SaqAI TTAA 3 cut(s) 528, 650, 950
SatI GCNGC 6 cut(s) 21, 33, 555, 582, 830, 863
Sau3AI GATC 1 cut(s) 775
Sau96I GGNCC 2 cut(s) 457, 835
ScrFI CCNGG 3 cut(s) 366, 383, 918
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 1 cut(s) 532
SfcI CTRYAG 2 cut(s) 21, 33
SinI GGWCC 1 cut(s) 835
SmiMI CAYNNNNRTG 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
SphI GCATGC 1 cut(s) 469
Sse9I AATT 8 cut(s) 129, 137, 169, 201, 213, 258, 509, 947
SspMI CTAG 2 cut(s) 551, 716
SstI GAGCTC 1 cut(s) 295
StyD4I CCNGG 3 cut(s) 364, 381, 916
TaaI ACNGT 3 cut(s) 144, 304, 733
TaiI ACGT 1 cut(s) 477
TaqI TCGA 2 cut(s) 124, 218
TasI AATT 8 cut(s) 129, 137, 169, 201, 213, 258, 509, 947
TatI WGTACW 1 cut(s) 262
TfiI GAWTC 2 cut(s) 820, 934
Tru1I TTAA 3 cut(s) 528, 650, 950
Tru9I TTAA 3 cut(s) 528, 650, 950
TscAI CASTG 3 cut(s) 195, 619, 853
TseI GCWGC 6 cut(s) 20, 32, 554, 581, 829, 862
TspDTI ATGAA 9 cut(s) 224, 225, 392, 446, 462, 512, 605, 612, 905
TspRI CASTG 3 cut(s) 195, 619, 853
VpaK11BI GGWCC 1 cut(s) 835
XagI CCTNNNNNAGG 1 cut(s) 380
XapI RAATTY 3 cut(s) 169, 213, 509
XceI RCATGY 1 cut(s) 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 845
XspI CTAG 2 cut(s) 551, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.