FvH4_4g05030

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
4352237 .. 4359308
7072 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05030.t3

Sequence Viewer

Length: 1731 bp
ATGGCCTCCACAATATTTAGAAGCTTTCAGACCCACCCTTTTGTGTTCCATCCCACCACATTACTCAGAAGAAAGAATGTTCTTTTCTACTGCACAATGAGAAGTGCACAAACCACCCAGGCAGCTACCCAAGAAAAGGTTAATCCCCCACAAGCGAAAGTTTCTAACTTGACCCAGAATAAGACACTTGAGAATGCCTTGAAGGACTACGAAGCAGTCATAGGTATCGAAACCCATGTCCAGCTATCTACTCTTACCAAGGCCTTTTGTAGTTGCCCCTATAATTATGCATCTCAACCAAACACTAGTATTTGCCCCATTTGTATGGGTCTGCCTGGTGCTTTACCGATTCTGAACTTTAAGGTCATTGAGGCTGCTGTGAAAGTTGGACTTGCACTCAATTGCAAATTGGCACTGAACTCGAAGTTTGATAGGAAACAGTACTTCTATGCTGACCTTCCAAAGGGGTACCAAATATCCCAGTTTGATGTTCCAATTGCGACTGGTGGCTACATTGATTTGGATATTCCAGTAGAGTTTGGTGGTGGGCACAGAAAGTTTGGCGTTACAAGAGTTCACATGGAAGAAGATGCAGGGAAGTTAATGCATTCAGATGATGGAAGTTACTCACAGGAAAGTAGCTTTCCCTTCGTACTTTCCATCAACATTATCTTTTTTGTAAAAGTTATCAATGTTTGTTCTTTTCTGCAGGTTGATCTAAATAGAGCGGGTGTACCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAAATGGTATTGAAGCTGCTGAATATGCTGCCGAAATACAGAGGGTTGTTCGGTATTTGGGAGTGAGTAATGGCAATATGCAAGAAGGTTCACTTCGTTGTGATGTCAATGTTTCTGTCCGACCAATTGGGCAATCACAGTTTGGTACAAAGGTGGAGATAAAAAATTTGAATTCTTTTTCAAACATGAGCAGGGCAATTGATTATGAAATTTCGAGGCAGGTGCTTCTTCATAGTCAGGGCCAAGACAAAGAAATTGTACAGGAAACGCGGCTATGGGAGGAAGGCACTCAGAAAACAGTTACAATGAGGAAGAAAGAAGGACTATCTGATTACCGATATTTTCCTGAACCAGACCTTCCAGGAGTTTTTCTCACCCAAGAATATGTTGATGGTATACATAACTCTTTGCCTGAACTTCCAGAAATGAAGCGTCGAAGGTATGAAAAGATGGGCCTAAGCATGCAGGACGTTCTTTTCCTTGCTAATGACATGAATGTCGCAGAGTTTTTTGATACTACGATTACAACGGGTGCTGATTCCAAGCTAGCTGCCAACTGGATTATGAGTGATATCGCTGCGTTTATGAAAAATGAAGAGTTGACCATCACTGAGGTCAAGCTTTCCCCCCAAGAGTTGGCTGAGTTAATAGCTTCCATAAAAGATGGGACTATTAGTGGGAAGATAGGGAAACAGATATTGTTTGAGCTACTAGCAAAAGGTGGTACTGTGAAGGGACTGATAGAAGAAAAAGATTTAGTTCAGATTGTAGATCCCGCTGAGATTGAGAAAATGGTAGAAAAGGTATTATCTGAGAATCCAAAGCAGCTGGACCAATATCGTGGTGGAAAGACTAAGCTGCAAGGTTATTTTGCTGGCCAGATAATGAAACTCTCGAAGGGAAAAGCAAATCCGGGGATTTTAAACAAGATTCTATTAGAGAAATTAAATGCCAAAAGCTGA

Protein Analysis

577

Amino Acids

64.3

Weight (kDa)

6.51

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GatB_N PF02934 73 - 386 8.3e-110 GatB/GatE catalytic domain
GatB_Yqey PF02637 425 - 572 7.2e-50 GatB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 979
AasI GACNNNNNNGTC 1 cut(s) 1265
Acc36I ACCTGC 2 cut(s) 700, 979
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 468
AccB7I CCANNNNNTGG 1 cut(s) 1405
AccBSI CCGCTC 1 cut(s) 728
AccI GTMKAC 1 cut(s) 1165
AccII CGCG 1 cut(s) 1039
AciI CCGC 3 cut(s) 728, 1039, 1545
AclWI GGATC 1 cut(s) 1535
AcoI YGGCCR 1 cut(s) 1645
AcsI RAATTY 3 cut(s) 934, 940, 978
AfaI GTAC 7 cut(s) 443, 470, 654, 735, 916, 1029, 1495
AfiI CCNNNNNNNGG 3 cut(s) 136, 463, 1405
AgsI TTSAA 4 cut(s) 202, 782, 940, 951
AhlI ACTAGT 1 cut(s) 305
AjnI CCWGG 3 cut(s) 117, 334, 1129
Alw21I GWGCWC 1 cut(s) 109
Alw44I GTGCAC 1 cut(s) 105
AlwI GGATC 1 cut(s) 1535
AoxI GGCC 5 cut(s) 3, 261, 1009, 1222, 1645
ApaLI GTGCAC 1 cut(s) 105
ApeKI GCWGC 8 cut(s) 122, 374, 785, 797, 1319, 1346, 1594, 1627
ApoI RAATTY 3 cut(s) 934, 940, 978
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
Asp718I GGTACC 1 cut(s) 468
AspS9I GGNCC 3 cut(s) 1009, 1222, 1600
AsuC2I CCSGG 1 cut(s) 1683
AsuHPI GGTGA 1 cut(s) 1135
AsuNHI GCTAGC 1 cut(s) 1315
AvaII GGWCC 1 cut(s) 1600
BaeGI GKGCMC 2 cut(s) 109, 552
BaeI ACNNNNGTAYC 2 cut(s) 906, 939
BalI TGGCCA 1 cut(s) 1647
BanI GGYRCC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 8 cut(s) 134, 361, 772, 784, 1306, 1333, 1606, 1614
BccI CCATC 7 cut(s) 57, 611, 668, 1154, 1213, 1382, 1427
BcgI CGANNNNNNTGC 4 cut(s) 402, 436, 973, 1007
BciT130I CCWGG 3 cut(s) 119, 336, 1131
BcnI CCSGG 1 cut(s) 1683
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 3 cut(s) 306, 1316, 1481
BfmI CTRYAG 1 cut(s) 707
BfuAI ACCTGC 2 cut(s) 700, 979
BisI GCNGC 9 cut(s) 123, 375, 786, 798, 1040, 1320, 1347, 1595, 1628
BlsI GCNGC 9 cut(s) 124, 376, 787, 799, 1041, 1321, 1348, 1596, 1629
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 4 cut(s) 119, 336, 1131, 1683
Bme18I GGWCC 1 cut(s) 1600
BmgT120I GGNCC 3 cut(s) 1009, 1222, 1600
BmiI GGNNCC 1 cut(s) 470
BmrFI CCNGG 4 cut(s) 119, 336, 1131, 1683
BmrI ACTGGG 1 cut(s) 475
BmsI GCATC 2 cut(s) 299, 580
BmtI GCTAGC 1 cut(s) 1319
BmuI ACTGGG 1 cut(s) 475
BplI GAGNNNNNCTC 2 cut(s) 1125, 1157
Bpu10I CCTNAGC 1 cut(s) 1226
BpuEI CTTGAG 2 cut(s) 209, 764
BpuMI CCSGG 1 cut(s) 1683
BsaJI CCNNGG 3 cut(s) 117, 258, 1682
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 463, 1405
Bse1I ACTGG 4 cut(s) 481, 508, 530, 1331
BseBI CCWGG 3 cut(s) 119, 336, 1131
BseDI CCNNGG 3 cut(s) 117, 258, 1682
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 3 cut(s) 136, 463, 1405
BseMII CTCAG 6 cut(s) 79, 1073, 1371, 1401, 1539, 1572
BseNI ACTGG 4 cut(s) 481, 508, 530, 1331
BseSI GKGCMC 2 cut(s) 109, 552
BseXI GCAGC 8 cut(s) 134, 361, 772, 784, 1306, 1333, 1606, 1614
BsgI GTGCAG 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 1039
BshFI GGCC 5 cut(s) 5, 263, 1011, 1224, 1647
BshNI GGYRCC 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 109
BsiSI CCGG 1 cut(s) 1682
BslFI GGGAC 2 cut(s) 1450, 1518
BslI CCNNNNNNNGG 3 cut(s) 136, 463, 1405
BsmFI GGGAC 2 cut(s) 1450, 1518
BsmI GAATGC 2 cut(s) 199, 607
BsnI GGCC 5 cut(s) 5, 263, 1011, 1224, 1647
Bsp1286I GDGCHC 2 cut(s) 109, 552
Bsp1407I TGTACA 1 cut(s) 1027
Bsp143I GATC 2 cut(s) 715, 1540
BspACI CCGC 3 cut(s) 728, 1039, 1545
BspANI GGCC 5 cut(s) 5, 263, 1011, 1224, 1647
BspCNI CTCAG 6 cut(s) 78, 1072, 1372, 1402, 1540, 1573
BspFNI CGCG 1 cut(s) 1039
BspLI GGNNCC 1 cut(s) 470
BspMAI CTGCAG 1 cut(s) 711
BspMI ACCTGC 2 cut(s) 700, 979
BspOI GCTAGC 1 cut(s) 1319
BspPI GGATC 1 cut(s) 1535
BspT107I GGYRCC 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 728
BsrGI TGTACA 1 cut(s) 1027
BsrI ACTGG 4 cut(s) 481, 508, 530, 1331
BssECI CCNNGG 3 cut(s) 117, 258, 1682
BssMI GATC 2 cut(s) 715, 1540
BssNAI GTATAC 1 cut(s) 1166
BssT1I CCWWGG 1 cut(s) 258
Bst1107I GTATAC 1 cut(s) 1166
Bst2UI CCWGG 3 cut(s) 119, 336, 1131
Bst4CI ACNGT 4 cut(s) 441, 909, 1069, 1498
Bst6I CTCTTC 1 cut(s) 1359
BstAUI TGTACA 1 cut(s) 1027
BstC8I GCNNGC 3 cut(s) 1232, 1317, 1645
BstDEI CTNAG 8 cut(s) 65, 1059, 1226, 1380, 1410, 1548, 1581, 1623
BstENI CCTNNNNNAGG 1 cut(s) 461
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 1039
BstKTI GATC 2 cut(s) 718, 1543
BstMBI GATC 2 cut(s) 715, 1540
BstMWI GCNNNNNNNGC 1 cut(s) 794
BstNI CCWGG 3 cut(s) 119, 336, 1131
BstNSI RCATGY 1 cut(s) 1234
BstSCI CCNGG 4 cut(s) 117, 334, 1129, 1681
BstSFI CTRYAG 1 cut(s) 707
BstSLI GKGCMC 2 cut(s) 109, 552
BstUI CGCG 1 cut(s) 1039
BstV1I GCAGC 8 cut(s) 134, 361, 772, 784, 1306, 1333, 1606, 1614
BstX2I RGATCY 1 cut(s) 1540
BstXI CCANNNNNNTGG 2 cut(s) 325, 1610
BstYI RGATCY 1 cut(s) 1540
BstZ17I GTATAC 1 cut(s) 1166
BsuRI GGCC 5 cut(s) 5, 263, 1011, 1224, 1647
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 413, 1377
BveI ACCTGC 2 cut(s) 700, 979
Cac8I GCNNGC 3 cut(s) 1232, 1317, 1645
Cfr13I GGNCC 3 cut(s) 1009, 1222, 1600
CseI GACGC 1 cut(s) 1190
Csp6I GTAC 7 cut(s) 442, 469, 653, 734, 915, 1028, 1494
CviAII CATG 5 cut(s) 236, 580, 955, 1231, 1261
CviQI GTAC 7 cut(s) 442, 469, 653, 734, 915, 1028, 1494
DdeI CTNAG 8 cut(s) 65, 1059, 1226, 1380, 1410, 1548, 1581, 1623
DpnI GATC 2 cut(s) 717, 1542
DpnII GATC 2 cut(s) 715, 1540
DraI TTTAAA 1 cut(s) 1692
DrdI GACNNNNNNGTC 1 cut(s) 1265
DseDI GACNNNNNNGTC 1 cut(s) 1265
EaeI YGGCCR 1 cut(s) 1645
Eam1104I CTCTTC 1 cut(s) 1359
EarI CTCTTC 1 cut(s) 1359
Eco130I CCWWGG 1 cut(s) 258
Eco147I AGGCCT 1 cut(s) 263
Eco32I GATATC 1 cut(s) 1342
Eco47I GGWCC 1 cut(s) 1600
EcoNI CCTNNNNNAGG 1 cut(s) 461
EcoRI GAATTC 1 cut(s) 940
EcoRII CCWGG 3 cut(s) 117, 334, 1129
EcoRV GATATC 1 cut(s) 1342
EcoT14I CCWWGG 1 cut(s) 258
EcoT22I ATGCAT 2 cut(s) 292, 609
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 5 cut(s) 239, 583, 958, 1234, 1264
FalI AAGNNNNNCTT 4 cut(s) 375, 407, 846, 878
FaqI GGGAC 2 cut(s) 1450, 1518
FatI CATG 5 cut(s) 235, 579, 954, 1230, 1260
FauI CCCGC 2 cut(s) 721, 1552
FblI GTMKAC 1 cut(s) 1165
Fnu4HI GCNGC 9 cut(s) 123, 375, 786, 798, 1040, 1320, 1347, 1595, 1628
FokI GGATG 1 cut(s) 36
Fsp4HI GCNGC 9 cut(s) 123, 375, 786, 798, 1040, 1320, 1347, 1595, 1628
FspBI CTAG 3 cut(s) 306, 1316, 1481
GluI GCNGC 9 cut(s) 123, 375, 786, 798, 1040, 1320, 1347, 1595, 1628
HaeIII GGCC 5 cut(s) 5, 263, 1011, 1224, 1647
HapII CCGG 1 cut(s) 1682
HgaI GACGC 1 cut(s) 1190
Hin1II CATG 5 cut(s) 239, 583, 958, 1234, 1264
HincII GTYRAC 1 cut(s) 1371
HindII GTYRAC 1 cut(s) 1371
HindIII AAGCTT 2 cut(s) 22, 1388
HinfI GANTC 4 cut(s) 349, 1307, 1585, 1699
HpaII CCGG 1 cut(s) 1682
HphI GGTGA 1 cut(s) 1135
Hpy166II GTNNAC 6 cut(s) 107, 577, 734, 860, 1166, 1371
Hpy188III TCNNGA 3 cut(s) 1115, 1190, 1663
Hpy8I GTNNAC 6 cut(s) 107, 577, 734, 860, 1166, 1371
Hpy99I CGWCG 1 cut(s) 1206
HpyCH4III ACNGT 4 cut(s) 441, 909, 1069, 1498
HpyCH4IV ACGT 1 cut(s) 1239
HpyF10VI GCNNNNNNNGC 1 cut(s) 794
HpyF3I CTNAG 8 cut(s) 65, 1059, 1226, 1380, 1410, 1548, 1581, 1623
HpySE526I ACGT 1 cut(s) 1239
Hsp92II CATG 5 cut(s) 239, 583, 958, 1234, 1264
KpnI GGTACC 1 cut(s) 472
Kzo9I GATC 2 cut(s) 715, 1540
Lsp1109I GCAGC 8 cut(s) 134, 361, 772, 784, 1306, 1333, 1606, 1614
LweI GCATC 2 cut(s) 299, 580
MaeI CTAG 3 cut(s) 306, 1316, 1481
MaeII ACGT 1 cut(s) 1239
MaeIII GTNAC 3 cut(s) 565, 623, 1069
MalI GATC 2 cut(s) 717, 1542
MbiI CCGCTC 1 cut(s) 728
MboI GATC 2 cut(s) 715, 1540
MboII GAAGA 8 cut(s) 81, 596, 599, 989, 1093, 1376, 1462, 1526
MfeI CAATTG 4 cut(s) 400, 495, 894, 966
MflI RGATCY 1 cut(s) 1540
MhlI GDGCHC 2 cut(s) 109, 552
MlsI TGGCCA 1 cut(s) 1647
MluNI TGGCCA 1 cut(s) 1647
MmeI TCCRAC 2 cut(s) 367, 913
MnlI CCTC 7 cut(s) 16, 364, 804, 978, 1042, 1071, 1375
Mox20I TGGCCA 1 cut(s) 1647
Mph1103I ATGCAT 2 cut(s) 292, 609
MscI TGGCCA 1 cut(s) 1647
MseI TTAA 6 cut(s) 141, 360, 602, 1415, 1691, 1715
MslI CAYNNNNRTG 2 cut(s) 323, 612
Msp20I TGGCCA 1 cut(s) 1647
MspA1I CMGCKG 2 cut(s) 1547, 1597
MspI CCGG 1 cut(s) 1682
MspR9I CCNGG 4 cut(s) 119, 336, 1131, 1683
MunI CAATTG 4 cut(s) 400, 495, 894, 966
Mva1269I GAATGC 2 cut(s) 199, 607
MvaI CCWGG 3 cut(s) 119, 336, 1131
MvnI CGCG 1 cut(s) 1039
MwoI GCNNNNNNNGC 1 cut(s) 794
NciI CCSGG 1 cut(s) 1683
NdeII GATC 2 cut(s) 715, 1540
NheI GCTAGC 1 cut(s) 1315
NlaIII CATG 5 cut(s) 239, 583, 958, 1234, 1264
NlaIV GGNNCC 1 cut(s) 470
NsiI ATGCAT 2 cut(s) 292, 609
NspI RCATGY 1 cut(s) 1234
PaeI GCATGC 1 cut(s) 1234
PaqCI CACCTGC 1 cut(s) 979
PceI AGGCCT 1 cut(s) 263
PctI GAATGC 2 cut(s) 199, 607
PfeI GAWTC 4 cut(s) 349, 1307, 1585, 1699
PflMI CCANNNNNTGG 1 cut(s) 1405
PfoI TCCNGGA 1 cut(s) 1129
PkrI GCNGC 9 cut(s) 124, 376, 787, 799, 1041, 1321, 1348, 1596, 1629
Psp6I CCWGG 3 cut(s) 117, 334, 1129
PspGI CCWGG 3 cut(s) 117, 334, 1129
PspN4I GGNNCC 1 cut(s) 470
PspPI GGNCC 3 cut(s) 1009, 1222, 1600
PstI CTGCAG 1 cut(s) 711
PsuI RGATCY 1 cut(s) 1540
PvuII CAGCTG 1 cut(s) 1597
RsaI GTAC 7 cut(s) 443, 470, 654, 735, 916, 1029, 1495
RsaNI GTAC 7 cut(s) 442, 469, 653, 734, 915, 1028, 1494
RseI CAYNNNNRTG 2 cut(s) 323, 612
SaqAI TTAA 6 cut(s) 141, 360, 602, 1415, 1691, 1715
SatI GCNGC 9 cut(s) 123, 375, 786, 798, 1040, 1320, 1347, 1595, 1628
Sau3AI GATC 2 cut(s) 715, 1540
Sau96I GGNCC 3 cut(s) 1009, 1222, 1600
ScaI AGTACT 1 cut(s) 443
ScrFI CCNGG 4 cut(s) 119, 336, 1131, 1683
SduI GDGCHC 2 cut(s) 109, 552
SfaNI GCATC 2 cut(s) 299, 580
SfcI CTRYAG 1 cut(s) 707
SinI GGWCC 1 cut(s) 1600
SmiMI CAYNNNNRTG 2 cut(s) 323, 612
SmlI CTYRAG 2 cut(s) 188, 743
SmoI CTYRAG 2 cut(s) 188, 743
SpeI ACTAGT 1 cut(s) 305
SphI GCATGC 1 cut(s) 1234
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 3 cut(s) 728, 1039, 1545
SspI AATATT 1 cut(s) 15
SspMI CTAG 3 cut(s) 306, 1316, 1481
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 4 cut(s) 117, 334, 1129, 1681
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 4 cut(s) 441, 909, 1069, 1498
TaiI ACGT 1 cut(s) 1242
TaqI TCGA 5 cut(s) 228, 422, 983, 1204, 1664
TatI WGTACW 2 cut(s) 441, 1027
TauI GCSGC 1 cut(s) 1042
TfiI GAWTC 4 cut(s) 349, 1307, 1585, 1699
Tru1I TTAA 6 cut(s) 141, 360, 602, 1415, 1691, 1715
Tru9I TTAA 6 cut(s) 141, 360, 602, 1415, 1691, 1715
TscAI CASTG 2 cut(s) 420, 1384
TseI GCWGC 8 cut(s) 122, 374, 785, 797, 1319, 1346, 1594, 1627
TspDTI ATGAA 8 cut(s) 989, 990, 1211, 1227, 1277, 1370, 1377, 1670
TspRI CASTG 2 cut(s) 420, 1384
Van91I CCANNNNNTGG 1 cut(s) 1405
VneI GTGCAC 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 1600
XagI CCTNNNNNAGG 1 cut(s) 461
XapI RAATTY 3 cut(s) 934, 940, 978
XceI RCATGY 1 cut(s) 1234
XcmI CCANNNNNNNNNTGG 1 cut(s) 1610
XmiI GTMKAC 1 cut(s) 1165
XspI CTAG 3 cut(s) 306, 1316, 1481
ZrmI AGTACT 1 cut(s) 443
Zsp2I ATGCAT 2 cut(s) 292, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.