MD13G1223700.v1.1

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
21839676 .. 21842862
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1223700.v1.1.491

Sequence Viewer

Length: 1386 bp
ATGGCTTCCACGATCTTTAGAAGCCTTCACACGAACCCTTGTTTGCTCTATCGAACTGCATTGCTTAGAAGAAAAAATGCCTTTTTGTATTGCACAATGAGGAGCGCACAAACCCAGACGGCCACCACACAAGAAAAGGTTAAGTCACAAGTGAAAGTAGCACCGAATGTTCAGAACAAAACACTTGAGAAAGCCTCAAAGGACTATGAAGCTGTCATAGCTGTAGAAGCTCATGTCCAGCTCAACACTCTTACCAAGGCCTTTTGTAGTTGTTCTTATAATTATGGTTCTCCACCAAACACCAGCGTCTGCCCCATATGTATGGGTCTGCCTGGCGCTTTACCGGTTTTGAACATGAAGGTCATTGGGTCTTCAGTTAAAGTGGGACTTTCACTCAATTGCAAAATGTCATTCAACTCAACGTTTGATAGGGAACAGTACTTTTACCTGGACCTTCCGAAGGGTTACCAAATATCACAGTTTGATGTTCCAATTGCCACTGGTGGCTACATTGATGTGGATCTTCCACTAGAGTTTGGTGGTGGGCATAGAAAGTTTGGCATTACAAGAGTTCACATGGAAGAGGATGTAGGGAAGCTGCTTCATTCAGAAGGTGGACGTCACTCACAGGAAATGAACTACATTCTGGTTGATTTAAACAGAGCCGGGGTGCCCTTGCTTGAGATTGTTTCTGAAACTGATATGAGAACTGGTATTGAAGCTGCAGAATTACAGAGGTTGGTTCGGTACTTGGGAGTGAGTAATGGGAATATGCAAGAGGGTTCACTTCGTTGTGATGTGAATGTCTCTGTTCGACCAATTGGGCAAATACAGTTTGGGACAAAGTTAAGTGGAGATAAAAAATTTGAATGTTTTTCATCTGTGAGCAGGGCAATAGATTATGAAATCTCCAGGAGGTGCTTCTTCATAGTCAAGGCCAGAACAAAGAAATTGTACAGGAAACTCAAAACAGTTACAATGAGAAAGAAAGAAGGACTTGCTGACTACCGATATTTCCCAGAACCAGACCTTCCAGGAGTCTTCCTCACCCATGACTATGTTGATGCTATTCGTAATACATTGCCTGAACTTCCAGAAATGAAGCGTCGGAGATATGAAAAGATGGGTCTGAGCATGCACGATGTTCTTTTTCTTGCAAACGACGTAAACGTTGCAGAGTTTTTTGATACTACTATTACAAAGGGTGCCGATGTGAAGCTAGCTACCAACTGGATAATGAGTGATGTTGCTGCCTATATGAAAAATGAAAAATTGACCATCAATGAGATTAAGCTTAGCCCCCAAGAGTTGGCTGAGTTAATAGCTTCCATTAAAGATGGGACTATTAGTGGGAAAATAGGAAAAGAGGTAACTGATACTGTATGA

Protein Analysis

462

Amino Acids

51.69

Weight (kDa)

8.88

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GatB_N PF02934 72 - 354 8.2e-90 GatB/GatE catalytic domain
GatB_Yqey PF02637 393 - 459 8.2e-17 GatB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 279
AatII GACGTC 1 cut(s) 622
AccB1I GGYRCC 2 cut(s) 670, 1205
AccB7I CCANNNNNTGG 1 cut(s) 1309
AclI AACGTT 2 cut(s) 422, 1170
AclWI GGATC 1 cut(s) 528
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 863
AcuI CTGAAG 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 619
AfaI GTAC 3 cut(s) 440, 749, 956
AfiI CCNNNNNNNGG 2 cut(s) 460, 1309
AgeI ACCGGT 1 cut(s) 343
AgsI TTSAA 4 cut(s) 352, 415, 719, 869
AjnI CCWGG 4 cut(s) 331, 447, 911, 1033
Alw26I GTCTC 1 cut(s) 811
AlwI GGATC 1 cut(s) 528
AlwNI CAGNNNCTG 1 cut(s) 309
AoxI GGCC 3 cut(s) 120, 258, 936
ApeKI GCWGC 3 cut(s) 598, 722, 1250
ApoI RAATTY 1 cut(s) 863
AsiGI ACCGGT 1 cut(s) 343
AspLEI GCGC 2 cut(s) 107, 338
AspS9I GGNCC 1 cut(s) 451
AsuC2I CCSGG 1 cut(s) 667
AsuHPI GGTGA 1 cut(s) 1039
AsuNHI GCTAGC 1 cut(s) 1219
AvaII GGWCC 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 675
BanI GGYRCC 2 cut(s) 670, 1205
BbsI GAAGAC 2 cut(s) 363, 1033
BbvI GCAGC 3 cut(s) 585, 709, 1237
BccI CCATC 3 cut(s) 1117, 1286, 1331
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 4 cut(s) 333, 449, 913, 1035
BcnI CCSGG 1 cut(s) 667
BcoDI GTCTC 1 cut(s) 811
BfaI CTAG 2 cut(s) 530, 1220
BfmI CTRYAG 2 cut(s) 222, 723
BfoI RGCGCY 1 cut(s) 339
BisI GCNGC 3 cut(s) 599, 723, 1251
BlpI GCTNAGC 1 cut(s) 1295
BlsI GCNGC 3 cut(s) 600, 724, 1252
BmcAI AGTACT 1 cut(s) 440
Bme1390I CCNGG 5 cut(s) 333, 449, 667, 913, 1035
Bme18I GGWCC 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 2 cut(s) 672, 1207
BmrFI CCNGG 5 cut(s) 333, 449, 667, 913, 1035
BmsI GCATC 1 cut(s) 1054
BmtI GCTAGC 1 cut(s) 1223
BpiI GAAGAC 2 cut(s) 363, 1033
BplI GAGNNNNNCTC 4 cut(s) 179, 211, 1029, 1061
BpmI CTGGAG 1 cut(s) 895
Bpu1102I GCTNAGC 1 cut(s) 1295
BpuEI CTTGAG 2 cut(s) 206, 701
BpuMI CCSGG 1 cut(s) 667
BsaBI GATNNNNATC 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 619
BsaJI CCNNGG 2 cut(s) 255, 666
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 2 cut(s) 460, 1309
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 3 cut(s) 505, 715, 1235
Bse3DI GCAATG 2 cut(s) 59, 1079
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 4 cut(s) 333, 449, 913, 1035
BseDI CCNNGG 2 cut(s) 255, 666
BseGI GGATG 1 cut(s) 592
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 2 cut(s) 460, 1309
BseMI GCAATG 2 cut(s) 59, 1079
BseMII CTCAG 2 cut(s) 1121, 1305
BseNI ACTGG 3 cut(s) 505, 715, 1235
BseRI GAGGAG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 675
BseXI GCAGC 3 cut(s) 585, 709, 1237
BshFI GGCC 3 cut(s) 122, 260, 938
BshNI GGYRCC 2 cut(s) 670, 1205
BshTI ACCGGT 1 cut(s) 343
BsiSI CCGG 2 cut(s) 344, 666
BslFI GGGAC 3 cut(s) 399, 853, 1354
BslI CCNNNNNNNGG 2 cut(s) 460, 1309
BsmAI GTCTC 1 cut(s) 811
BsmFI GGGAC 3 cut(s) 399, 853, 1354
BsnI GGCC 3 cut(s) 122, 260, 938
Bsp1286I GDGCHC 1 cut(s) 675
Bsp1407I TGTACA 1 cut(s) 954
Bsp143I GATC 2 cut(s) 12, 520
Bsp1720I GCTNAGC 1 cut(s) 1295
BspANI GGCC 3 cut(s) 122, 260, 938
BspCNI CTCAG 2 cut(s) 1122, 1306
BspLI GGNNCC 2 cut(s) 672, 1207
BspMAI CTGCAG 1 cut(s) 727
BspOI GCTAGC 1 cut(s) 1223
BspPI GGATC 1 cut(s) 528
BspT107I GGYRCC 2 cut(s) 670, 1205
BsrDI GCAATG 2 cut(s) 59, 1079
BsrFI RCCGGY 1 cut(s) 343
BsrGI TGTACA 1 cut(s) 954
BsrI ACTGG 3 cut(s) 505, 715, 1235
BssAI RCCGGY 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 255, 666
BssMI GATC 2 cut(s) 12, 520
BssNI GRCGYC 1 cut(s) 619
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 4 cut(s) 333, 449, 913, 1035
Bst4CI ACNGT 5 cut(s) 438, 480, 834, 973, 1381
Bst6I CTCTTC 1 cut(s) 576
BstACI GRCGYC 1 cut(s) 619
BstAUI TGTACA 1 cut(s) 954
BstC8I GCNNGC 2 cut(s) 1136, 1221
BstDEI CTNAG 4 cut(s) 65, 1130, 1295, 1314
BstEII GGTNACC 1 cut(s) 464
BstENI CCTNNNNNAGG 1 cut(s) 458
BstF5I GGATG 1 cut(s) 592
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 2 cut(s) 107, 338
BstKTI GATC 2 cut(s) 15, 523
BstMAI GTCTC 1 cut(s) 811
BstMBI GATC 2 cut(s) 12, 520
BstMWI GCNNNNNNNGC 2 cut(s) 218, 227
BstNI CCWGG 4 cut(s) 333, 449, 913, 1035
BstNSI RCATGY 1 cut(s) 1138
BstPI GGTNACC 1 cut(s) 464
BstSCI CCNGG 5 cut(s) 331, 447, 665, 911, 1033
BstSFI CTRYAG 2 cut(s) 222, 723
BstSLI GKGCMC 1 cut(s) 675
BstV1I GCAGC 3 cut(s) 585, 709, 1237
BstV2I GAAGAC 2 cut(s) 363, 1033
BstX2I RGATCY 1 cut(s) 520
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 1 cut(s) 520
BsuRI GGCC 3 cut(s) 122, 260, 938
BtsCI GGATG 1 cut(s) 592
BtsIMutI CAGTG 1 cut(s) 498
Cac8I GCNNGC 2 cut(s) 1136, 1221
CaiI CAGNNNCTG 1 cut(s) 309
CfoI GCGC 2 cut(s) 107, 338
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 451
CseI GACGC 2 cut(s) 295, 1094
Csp6I GTAC 3 cut(s) 439, 748, 955
CspAI ACCGGT 1 cut(s) 343
CviAII CATG 5 cut(s) 233, 355, 577, 1052, 1135
CviQI GTAC 3 cut(s) 439, 748, 955
DdeI CTNAG 4 cut(s) 65, 1130, 1295, 1314
DpnI GATC 2 cut(s) 14, 522
DpnII GATC 2 cut(s) 12, 520
DraI TTTAAA 1 cut(s) 657
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 255
Eco147I AGGCCT 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 357
Eco91I GGTNACC 1 cut(s) 464
EcoNI CCTNNNNNAGG 1 cut(s) 458
EcoO65I GGTNACC 1 cut(s) 464
EcoRII CCWGG 4 cut(s) 331, 447, 911, 1033
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 5 cut(s) 236, 358, 580, 1055, 1138
FalI AAGNNNNNCTT 4 cut(s) 372, 404, 981, 1013
FaqI GGGAC 3 cut(s) 399, 853, 1354
FatI CATG 5 cut(s) 232, 354, 576, 1051, 1134
FauNDI CATATG 1 cut(s) 317
Fnu4HI GCNGC 3 cut(s) 599, 723, 1251
FokI GGATG 1 cut(s) 599
Fsp4HI GCNGC 3 cut(s) 599, 723, 1251
FspBI CTAG 2 cut(s) 530, 1220
GlaI GCGC 2 cut(s) 106, 337
GluI GCNGC 3 cut(s) 599, 723, 1251
GsuI CTGGAG 1 cut(s) 895
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 3 cut(s) 122, 260, 938
HapII CCGG 2 cut(s) 344, 666
HgaI GACGC 2 cut(s) 295, 1094
HhaI GCGC 2 cut(s) 107, 338
Hin1I GRCGYC 1 cut(s) 619
Hin1II CATG 5 cut(s) 236, 358, 580, 1055, 1138
Hin6I GCGC 2 cut(s) 105, 336
HinP1I GCGC 2 cut(s) 105, 336
HindIII AAGCTT 1 cut(s) 1292
HinfI GANTC 1 cut(s) 1038
HpaII CCGG 2 cut(s) 344, 666
HphI GGTGA 1 cut(s) 1039
Hpy166II GTNNAC 4 cut(s) 574, 617, 785, 1168
Hpy188I TCNGA 6 cut(s) 174, 459, 610, 694, 1110, 1131
Hpy188III TCNNGA 1 cut(s) 1094
Hpy8I GTNNAC 4 cut(s) 574, 617, 785, 1168
Hpy99I CGWCG 2 cut(s) 1110, 1166
HpyAV CCTTC 7 cut(s) 35, 352, 454, 464, 605, 986, 1040
HpyCH4III ACNGT 5 cut(s) 438, 480, 834, 973, 1381
HpyCH4IV ACGT 4 cut(s) 422, 619, 1164, 1170
HpyCH4V TGCA 8 cut(s) 59, 93, 402, 725, 775, 1138, 1157, 1175
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 227
HpyF3I CTNAG 4 cut(s) 65, 1130, 1295, 1314
HpySE526I ACGT 4 cut(s) 422, 619, 1164, 1170
Hsp92I GRCGYC 1 cut(s) 619
Hsp92II CATG 5 cut(s) 236, 358, 580, 1055, 1138
HspAI GCGC 2 cut(s) 105, 336
Kzo9I GATC 2 cut(s) 12, 520
LmnI GCTCC 1 cut(s) 102
Lsp1109I GCAGC 3 cut(s) 585, 709, 1237
LweI GCATC 1 cut(s) 1054
MaeI CTAG 2 cut(s) 530, 1220
MaeII ACGT 4 cut(s) 422, 619, 1164, 1170
MaeIII GTNAC 5 cut(s) 144, 464, 620, 973, 1369
MalI GATC 2 cut(s) 14, 522
MboI GATC 2 cut(s) 12, 520
MboII GAAGA 6 cut(s) 81, 363, 515, 593, 916, 1033
MfeI CAATTG 3 cut(s) 397, 492, 819
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 675
MluCI AATT 8 cut(s) 280, 397, 492, 728, 819, 863, 950, 1271
MlyI GAGTC 1 cut(s) 1047
MmeI TCCRAC 1 cut(s) 1088
MnlI CCTC 8 cut(s) 93, 205, 577, 729, 772, 909, 1055, 1360
MseI TTAA 7 cut(s) 141, 378, 656, 848, 1290, 1319, 1332
MslI CAYNNNNRTG 3 cut(s) 320, 515, 1056
MspI CCGG 2 cut(s) 344, 666
MspR9I CCNGG 5 cut(s) 333, 449, 667, 913, 1035
MunI CAATTG 3 cut(s) 397, 492, 819
MvaI CCWGG 4 cut(s) 333, 449, 913, 1035
MwoI GCNNNNNNNGC 2 cut(s) 218, 227
NciI CCSGG 1 cut(s) 667
NdeI CATATG 1 cut(s) 317
NdeII GATC 2 cut(s) 12, 520
NheI GCTAGC 1 cut(s) 1219
NlaIII CATG 5 cut(s) 236, 358, 580, 1055, 1138
NlaIV GGNNCC 2 cut(s) 672, 1207
NmuCI GTSAC 2 cut(s) 144, 620
NspI RCATGY 1 cut(s) 1138
PaeI GCATGC 1 cut(s) 1138
PceI AGGCCT 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 1167
PflMI CCANNNNNTGG 1 cut(s) 1309
PfoI TCCNGGA 2 cut(s) 911, 1033
PinAI ACCGGT 1 cut(s) 343
PkrI GCNGC 3 cut(s) 600, 724, 1252
PleI GAGTC 1 cut(s) 1046
PpsI GAGTC 1 cut(s) 1046
PsiI TTATAA 1 cut(s) 279
Psp1406I AACGTT 2 cut(s) 422, 1170
Psp6I CCWGG 4 cut(s) 331, 447, 911, 1033
PspEI GGTNACC 1 cut(s) 464
PspGI CCWGG 4 cut(s) 331, 447, 911, 1033
PspN4I GGNNCC 2 cut(s) 672, 1207
PspPI GGNCC 1 cut(s) 451
PstI CTGCAG 1 cut(s) 727
PstNI CAGNNNCTG 1 cut(s) 309
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 3 cut(s) 440, 749, 956
RsaNI GTAC 3 cut(s) 439, 748, 955
RseI CAYNNNNRTG 3 cut(s) 320, 515, 1056
SaqAI TTAA 7 cut(s) 141, 378, 656, 848, 1290, 1319, 1332
SatI GCNGC 3 cut(s) 599, 723, 1251
Sau3AI GATC 2 cut(s) 12, 520
Sau96I GGNCC 1 cut(s) 451
ScaI AGTACT 1 cut(s) 440
SchI GAGTC 1 cut(s) 1047
ScrFI CCNGG 5 cut(s) 333, 449, 667, 913, 1035
SduI GDGCHC 1 cut(s) 675
SfaNI GCATC 1 cut(s) 1054
SfcI CTRYAG 2 cut(s) 222, 723
SinI GGWCC 1 cut(s) 451
SmiMI CAYNNNNRTG 3 cut(s) 320, 515, 1056
SmlI CTYRAG 2 cut(s) 185, 680
SmoI CTYRAG 2 cut(s) 185, 680
SphI GCATGC 1 cut(s) 1138
Sse9I AATT 8 cut(s) 280, 397, 492, 728, 819, 863, 950, 1271
SseBI AGGCCT 1 cut(s) 260
SspMI CTAG 2 cut(s) 530, 1220
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 5 cut(s) 331, 447, 665, 911, 1033
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 5 cut(s) 438, 480, 834, 973, 1381
TaiI ACGT 4 cut(s) 425, 622, 1167, 1173
TaqI TCGA 2 cut(s) 52, 814
TasI AATT 8 cut(s) 280, 397, 492, 728, 819, 863, 950, 1271
TatI WGTACW 2 cut(s) 438, 954
Tru1I TTAA 7 cut(s) 141, 378, 656, 848, 1290, 1319, 1332
Tru9I TTAA 7 cut(s) 141, 378, 656, 848, 1290, 1319, 1332
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 2 cut(s) 144, 620
TseI GCWGC 3 cut(s) 598, 722, 1250
Tsp45I GTSAC 2 cut(s) 144, 620
TspRI CASTG 1 cut(s) 505
Van91I CCANNNNNTGG 1 cut(s) 1309
VpaK11BI GGWCC 1 cut(s) 451
XagI CCTNNNNNAGG 1 cut(s) 458
XapI RAATTY 1 cut(s) 863
XceI RCATGY 1 cut(s) 1138
XspI CTAG 2 cut(s) 530, 1220
ZraI GACGTC 1 cut(s) 620
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.