Rh4DG058900

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
8982552 .. 8987436
4885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG058900.1

Sequence Viewer

Length: 1491 bp
ATGAGAAGTGAACAAACCCAGACAGCCACCCAAGAGAAGGTTAAGCCACAAGTGAAAGTTTCTAACTTGAACCCGAATAAGAAACTGGAGAATATCTCGAAGGACTATGAAGCAGTCATAGGTATCGAAACCCATGTCCAGCTATCCACTCAGACCAAGGCCTTTTGCAGTTGCCCTTATAATTATGGCTCTCAACCAAACACTAGTATTTGCCCCATTTGTATGGGTCTGCCCGGTGCTTTACCGATTTTGAACTTTAAGGTCATTGAGTCTGCTGTGAAAGTTGGACTTGCACTCAATTGCAAATTGGCAATGAACTCGAAGTTTGATCGGAAACAATACTTTTACGCGGACCTTCCAAAGGGGTACCAAATATCCCAGTTTGATGTTCCAATTGCGACTGGTGGCTACATTGATTTGGATATTCCAGTAGAGTTTGGTGGTGGGCATAGGAAGTTCGGCATTACAAGAGTTGATCTAAATAGAGCGGGTGTGCCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAAATGGTATTGAAGCTGCAGAATATGCTGCAGAAATACAGAGGGTGGTTCGGTATTTGGGAGTGAGTAATGGCAATATGCAAGAAGGTTCACTTCGTTGTGATGTCAATGTTTCTGTTCGACCAATTGGGCAATTACAGTTTGGGACGAAGGTGGAGATAAAAAATTTGAACGCTTTTTCGGCAGTGAGCAGGGCAATTGATTATGAAATTTCGAGGCAGGTGCTTCTTCATAGTCAAGGCCAAGACAAAGAAATTGTACAGGAAACACGGCTATGGGAAGAAGGAGCTCAGAAAACAGTTACAATGAGGAAGAAAGAAGGACTATCTGATTACCGATATTTTCCTGAACCAGACCTTCCAGAAGTTTTCCTCACCCAGGACTATGTTGATGGTATTCATAACTCTTTGCCTGAACTTCCAGAAATGAAGCGTCGGAGGTATGAAAAGATGGGCCTAAGCATGCAGGACATTCTTTTCCTTGCTAACGACATGAATGTTGCAGAATTTTTTGATACTACTATTAAGAAGGGTGCTGATGCGAAGCTAGCTGCCAACTGGATAATGAGTGATATTGCTGCCTATATGAAAAATGAAGAGTTGTCCATCACTGAGGTCAAGCTTTCCCCTCAAGAGTTGGCTGAGTTAATAGCTTCCATAAAAGATGGGACTATTAGTGGGAAGATAGGGAAACAGATATTGTTTGAGCTTCTAGCAAAAGGTGGTACTGTGAAGGGACTGATAGAAGAAAAAGATTTAGTTCAGATTGTAGATCCCGCTGAGATTGAGAAAATGGTGGAAAAGGTGTTGTCAGAGAATCCAAAGCAGCTGGACCAATATCGTGGTGGAAAGACTAAGCTGCAAGGTTATTTTGCTGGCCAGATAATGAAACTGTCAAAAGGAAAGGCAAATCCAGGGCTTCTAAACAAGATTCTGTTAGAGAAATTAAATGCCAAAAGCTGA

Protein Analysis

496

Amino Acids

55.29

Weight (kDa)

6.93

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GatB_N PF02934 39 - 306 1.2e-101 GatB/GatE catalytic domain
GatB_Yqey PF02637 345 - 492 5.7e-52 GatB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AarI CACCTGC 1 cut(s) 739
Acc36I ACCTGC 1 cut(s) 739
Acc65I GGTACC 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 366
AccBSI CCGCTC 1 cut(s) 488
AccII CGCG 1 cut(s) 350
AciI CCGC 3 cut(s) 350, 488, 1305
AclWI GGATC 1 cut(s) 1295
AcoI YGGCCR 1 cut(s) 1405
AcsI RAATTY 3 cut(s) 694, 738, 1034
AfaI GTAC 3 cut(s) 368, 789, 1255
AfiI CCNNNNNNNGG 3 cut(s) 37, 361, 907
AgsI TTSAA 4 cut(s) 70, 253, 542, 700
AhlI ACTAGT 1 cut(s) 203
AjnI CCWGG 2 cut(s) 906, 1441
Alw21I GWGCWC 1 cut(s) 820
AlwI GGATC 1 cut(s) 1295
AoxI GGCC 4 cut(s) 159, 769, 982, 1405
ApeKI GCWGC 6 cut(s) 545, 557, 1079, 1106, 1354, 1387
ApoI RAATTY 3 cut(s) 694, 738, 1034
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp718I GGTACC 1 cut(s) 366
AspS9I GGNCC 3 cut(s) 352, 982, 1360
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 895
AsuNHI GCTAGC 1 cut(s) 1075
AvaII GGWCC 2 cut(s) 352, 1360
BaeGI GKGCMC 1 cut(s) 498
BalI TGGCCA 1 cut(s) 1407
BanI GGYRCC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 820
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 6 cut(s) 532, 544, 1066, 1093, 1366, 1374
BccI CCATC 4 cut(s) 914, 973, 1142, 1187
BceAI ACGGC 1 cut(s) 815
BcgI CGANNNNNNTGC 4 cut(s) 300, 334, 733, 767
BciT130I CCWGG 2 cut(s) 908, 1443
BcnI CCSGG 1 cut(s) 234
BcuI ACTAGT 1 cut(s) 203
BfaI CTAG 3 cut(s) 204, 1076, 1241
BfmI CTRYAG 2 cut(s) 546, 558
BfuAI ACCTGC 1 cut(s) 739
BisI GCNGC 6 cut(s) 546, 558, 1080, 1107, 1355, 1388
BlsI GCNGC 6 cut(s) 547, 559, 1081, 1108, 1356, 1389
Bme1390I CCNGG 3 cut(s) 234, 908, 1443
Bme18I GGWCC 2 cut(s) 352, 1360
BmgT120I GGNCC 3 cut(s) 352, 982, 1360
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 3 cut(s) 234, 908, 1443
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 1057
BmtI GCTAGC 1 cut(s) 1079
BmuI ACTGGG 1 cut(s) 373
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BpmI CTGGAG 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 986
BpuEI CTTGAG 2 cut(s) 524, 1143
BpuMI CCSGG 1 cut(s) 234
BsaJI CCNNGG 3 cut(s) 156, 906, 1442
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 361, 907
Bse1I ACTGG 5 cut(s) 90, 379, 406, 428, 1091
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 2 cut(s) 908, 1443
BseDI CCNNGG 3 cut(s) 156, 906, 1442
BseLI CCNNNNNNNGG 3 cut(s) 37, 361, 907
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 5 cut(s) 164, 833, 1131, 1161, 1299
BseNI ACTGG 5 cut(s) 90, 379, 406, 428, 1091
BseSI GKGCMC 1 cut(s) 498
BseXI GCAGC 6 cut(s) 532, 544, 1066, 1093, 1366, 1374
Bsh1236I CGCG 1 cut(s) 350
BshFI GGCC 4 cut(s) 161, 771, 984, 1407
BshNI GGYRCC 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 820
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 3 cut(s) 688, 1210, 1278
BslI CCNNNNNNNGG 3 cut(s) 37, 361, 907
BsmFI GGGAC 3 cut(s) 688, 1210, 1278
BsnI GGCC 4 cut(s) 161, 771, 984, 1407
Bsp1286I GDGCHC 2 cut(s) 498, 820
Bsp1407I TGTACA 1 cut(s) 787
Bsp143I GATC 3 cut(s) 328, 475, 1300
BspACI CCGC 3 cut(s) 350, 488, 1305
BspANI GGCC 4 cut(s) 161, 771, 984, 1407
BspCNI CTCAG 5 cut(s) 163, 832, 1132, 1162, 1300
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 368
BspMAI CTGCAG 2 cut(s) 550, 562
BspMI ACCTGC 1 cut(s) 739
BspOI GCTAGC 1 cut(s) 1079
BspPI GGATC 1 cut(s) 1295
BspT107I GGYRCC 1 cut(s) 366
BsrBI CCGCTC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 318
BsrGI TGTACA 1 cut(s) 787
BsrI ACTGG 5 cut(s) 90, 379, 406, 428, 1091
BssECI CCNNGG 3 cut(s) 156, 906, 1442
BssMI GATC 3 cut(s) 328, 475, 1300
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 908, 1443
Bst4CI ACNGT 4 cut(s) 669, 829, 1258, 1422
Bst6I CTCTTC 1 cut(s) 1119
BstAPI GCANNNNNTGC 1 cut(s) 554
BstAUI TGTACA 1 cut(s) 787
BstC8I GCNNGC 3 cut(s) 992, 1077, 1405
BstDEI CTNAG 7 cut(s) 150, 819, 986, 1140, 1170, 1308, 1383
BstENI CCTNNNNNAGG 2 cut(s) 359, 905
BstFNI CGCG 1 cut(s) 350
BstKTI GATC 3 cut(s) 331, 478, 1303
BstMBI GATC 3 cut(s) 328, 475, 1300
BstMWI GCNNNNNNNGC 3 cut(s) 554, 710, 1076
BstNI CCWGG 2 cut(s) 908, 1443
BstNSI RCATGY 1 cut(s) 994
BstSCI CCNGG 3 cut(s) 232, 906, 1441
BstSFI CTRYAG 2 cut(s) 546, 558
BstSLI GKGCMC 1 cut(s) 498
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 6 cut(s) 532, 544, 1066, 1093, 1366, 1374
BstX2I RGATCY 1 cut(s) 1300
BstXI CCANNNNNNTGG 2 cut(s) 223, 1370
BstYI RGATCY 1 cut(s) 1300
BsuRI GGCC 4 cut(s) 161, 771, 984, 1407
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 2 cut(s) 720, 1137
BveI ACCTGC 1 cut(s) 739
Cac8I GCNNGC 3 cut(s) 992, 1077, 1405
Cfr13I GGNCC 3 cut(s) 352, 982, 1360
CseI GACGC 1 cut(s) 950
Csp6I GTAC 3 cut(s) 367, 788, 1254
CviAII CATG 3 cut(s) 134, 991, 1021
CviQI GTAC 3 cut(s) 367, 788, 1254
DdeI CTNAG 7 cut(s) 150, 819, 986, 1140, 1170, 1308, 1383
DpnI GATC 3 cut(s) 330, 477, 1302
DpnII GATC 3 cut(s) 328, 475, 1300
EaeI YGGCCR 1 cut(s) 1405
Eam1104I CTCTTC 1 cut(s) 1119
EarI CTCTTC 1 cut(s) 1119
Ecl136II GAGCTC 1 cut(s) 818
Eco130I CCWWGG 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 820
Eco47I GGWCC 2 cut(s) 352, 1360
Eco53kI GAGCTC 1 cut(s) 818
EcoICRI GAGCTC 1 cut(s) 818
EcoNI CCTNNNNNAGG 2 cut(s) 359, 905
EcoRII CCWGG 2 cut(s) 906, 1441
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 820
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 3 cut(s) 137, 994, 1024
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 606, 638
FaqI GGGAC 3 cut(s) 688, 1210, 1278
FatI CATG 3 cut(s) 133, 990, 1020
FauI CCCGC 2 cut(s) 481, 1312
Fnu4HI GCNGC 6 cut(s) 546, 558, 1080, 1107, 1355, 1388
FriOI GRGCYC 1 cut(s) 820
Fsp4HI GCNGC 6 cut(s) 546, 558, 1080, 1107, 1355, 1388
FspBI CTAG 3 cut(s) 204, 1076, 1241
GluI GCNGC 6 cut(s) 546, 558, 1080, 1107, 1355, 1388
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 4 cut(s) 161, 771, 984, 1407
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 950
Hin1II CATG 3 cut(s) 137, 994, 1024
HindIII AAGCTT 1 cut(s) 1148
HinfI GANTC 3 cut(s) 269, 1345, 1459
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 895
Hpy166II GTNNAC 2 cut(s) 11, 620
Hpy188I TCNGA 8 cut(s) 153, 333, 517, 822, 859, 966, 1293, 1342
Hpy188III TCNNGA 5 cut(s) 97, 875, 890, 950, 1160
Hpy8I GTNNAC 2 cut(s) 11, 620
Hpy99I CGWCG 1 cut(s) 966
HpyCH4III ACNGT 4 cut(s) 669, 829, 1258, 1422
HpyCH4V TGCA 9 cut(s) 168, 293, 303, 548, 560, 610, 994, 1031, 1390
HpyF10VI GCNNNNNNNGC 3 cut(s) 554, 710, 1076
HpyF3I CTNAG 7 cut(s) 150, 819, 986, 1140, 1170, 1308, 1383
Hsp92II CATG 3 cut(s) 137, 994, 1024
KpnI GGTACC 1 cut(s) 370
Kzo9I GATC 3 cut(s) 328, 475, 1300
LmnI GCTCC 1 cut(s) 815
Lsp1109I GCAGC 6 cut(s) 532, 544, 1066, 1093, 1366, 1374
LweI GCATC 1 cut(s) 1057
MaeI CTAG 3 cut(s) 204, 1076, 1241
MaeIII GTNAC 1 cut(s) 829
MalI GATC 3 cut(s) 330, 477, 1302
MbiI CCGCTC 1 cut(s) 488
MboI GATC 3 cut(s) 328, 475, 1300
MboII GAAGA 6 cut(s) 749, 821, 853, 1136, 1222, 1286
MfeI CAATTG 4 cut(s) 298, 393, 654, 726
MflI RGATCY 1 cut(s) 1300
MhlI GDGCHC 2 cut(s) 498, 820
MlsI TGGCCA 1 cut(s) 1407
MluNI TGGCCA 1 cut(s) 1407
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 2 cut(s) 265, 944
MnlI CCTC 7 cut(s) 564, 738, 831, 911, 960, 1135, 1167
Mox20I TGGCCA 1 cut(s) 1407
MscI TGGCCA 1 cut(s) 1407
MseI TTAA 5 cut(s) 42, 258, 1053, 1175, 1475
MslI CAYNNNNRTG 2 cut(s) 221, 802
Msp20I TGGCCA 1 cut(s) 1407
MspA1I CMGCKG 2 cut(s) 1307, 1357
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 3 cut(s) 234, 908, 1443
MunI CAATTG 4 cut(s) 298, 393, 654, 726
MvaI CCWGG 2 cut(s) 908, 1443
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 554, 710, 1076
NciI CCSGG 1 cut(s) 234
NdeII GATC 3 cut(s) 328, 475, 1300
NheI GCTAGC 1 cut(s) 1075
NlaIII CATG 3 cut(s) 137, 994, 1024
NlaIV GGNNCC 1 cut(s) 368
NspI RCATGY 1 cut(s) 994
PaeI GCATGC 1 cut(s) 994
PaqCI CACCTGC 1 cut(s) 739
PceI AGGCCT 1 cut(s) 161
PfeI GAWTC 2 cut(s) 1345, 1459
PkrI GCNGC 6 cut(s) 547, 559, 1081, 1108, 1356, 1389
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PsiI TTATAA 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 820
Psp6I CCWGG 2 cut(s) 906, 1441
PspGI CCWGG 2 cut(s) 906, 1441
PspN4I GGNNCC 1 cut(s) 368
PspPI GGNCC 3 cut(s) 352, 982, 1360
PstI CTGCAG 2 cut(s) 550, 562
PsuI RGATCY 1 cut(s) 1300
PvuII CAGCTG 1 cut(s) 1357
RsaI GTAC 3 cut(s) 368, 789, 1255
RsaNI GTAC 3 cut(s) 367, 788, 1254
RseI CAYNNNNRTG 2 cut(s) 221, 802
SacI GAGCTC 1 cut(s) 820
SaqAI TTAA 5 cut(s) 42, 258, 1053, 1175, 1475
SatI GCNGC 6 cut(s) 546, 558, 1080, 1107, 1355, 1388
Sau3AI GATC 3 cut(s) 328, 475, 1300
Sau96I GGNCC 3 cut(s) 352, 982, 1360
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 3 cut(s) 234, 908, 1443
SduI GDGCHC 2 cut(s) 498, 820
SfaNI GCATC 1 cut(s) 1057
SfcI CTRYAG 2 cut(s) 546, 558
SinI GGWCC 2 cut(s) 352, 1360
SmiMI CAYNNNNRTG 2 cut(s) 221, 802
SmlI CTYRAG 2 cut(s) 503, 1158
SmoI CTYRAG 2 cut(s) 503, 1158
SpeI ACTAGT 1 cut(s) 203
SphI GCATGC 1 cut(s) 994
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 3 cut(s) 350, 488, 1305
SspMI CTAG 3 cut(s) 204, 1076, 1241
SstI GAGCTC 1 cut(s) 820
StuI AGGCCT 1 cut(s) 161
StyD4I CCNGG 3 cut(s) 232, 906, 1441
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 4 cut(s) 669, 829, 1258, 1422
TaqI TCGA 5 cut(s) 98, 126, 320, 649, 743
TatI WGTACW 1 cut(s) 787
TfiI GAWTC 2 cut(s) 1345, 1459
Tru1I TTAA 5 cut(s) 42, 258, 1053, 1175, 1475
Tru9I TTAA 5 cut(s) 42, 258, 1053, 1175, 1475
TscAI CASTG 2 cut(s) 720, 1144
TseI GCWGC 6 cut(s) 545, 557, 1079, 1106, 1354, 1387
TspRI CASTG 2 cut(s) 720, 1144
VpaK11BI GGWCC 2 cut(s) 352, 1360
XagI CCTNNNNNAGG 2 cut(s) 359, 905
XapI RAATTY 3 cut(s) 694, 738, 1034
XceI RCATGY 1 cut(s) 994
XcmI CCANNNNNNNNNTGG 1 cut(s) 1370
XspI CTAG 3 cut(s) 204, 1076, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.