Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002534

Physical Location & Seq

Genomic Coordinates Reverse (-)

43431684 .. 43433003

Gene Structure 1320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0353600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTCAGGGAAATGTTTTATCATGCATTTAATGGGTACATGGACCATGCTTTCCCACTTGATGAATTAAGGCCTCATTCTTGTGGGGGTGAAGATAGCCTCGGTGGATATGCCCTAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGATCGGGACGGCTTTGCTGCCTCTGTTGAATGGATTGGTAAAAACCTTCAGTTTAAAATAAATAAGACGGTATCTGTTTTTGAGGGGGCTGTAGCCAGAGGCCAAAATGTCAACAACATTTATGGGCTGGTTGCAGATGAACTTGTAGAAGAGTTTTCTGACCCTATCAATGACGTTACATCCCCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050567 GO:0070681 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

GatB_N GatB_Yqey

Protein Analysis

115

Amino Acids

12.63

Weight (kDa)

4.36

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	5 - 80	4.2e-22	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48520 AT1G48520 AT1G48520
fragaria_vesca	FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030
malus_domestica	MD13G1223700.v1.1 MD16G1228500.v1.1
prunus_persica	Prupe.1G050600_v2.0.a1
pyrus_communis	pycom13g19770 pycom16g19100
rosa_chinensis	RchiOBHm_Chr4g0395911 RchiOBHm_Chr7g0203561
rosa_laevigata	RLG00000003518 RLG00000009588
rosa_multiflora	Rmu_sc0001103.1_g000011 Rmu_sc0007757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253680 Rroxscaffold_5G00340680
rosa_rugosa	Rorug03G0353500.1 Rorug03G0353600 Rorug07G0077000
rosa_samantha	Rh4AG062900 Rh4AG063900 Rh4AG066700 Rh4BG062600 Rh4CG068900 Rh4DG058900 Rh7AG206600 Rh7BG206100 Rh7BG337200 Rh7CG219200 Rh7DG213800
rosa_wichuraiana	Rw4G005170 Rw7G018030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	185
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	131
AoxI	GGCC	2 cut(s)	71, 256
ApeKI	GCWGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	101, 167
AvaII	GGWCC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BmsI	GCATC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	2 cut(s)	73, 258
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	73, 258
Bsp143I	GATC	1 cut(s)	157
BspANI	GGCC	2 cut(s)	73, 258
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	335
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	73, 258
BtsCI	GGATG	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	3 cut(s)	23, 40, 47
CviJI	RGCY	8 cut(s)	73, 99, 146, 168, 245, 251, 258, 283
CviKI_1	RGCY	8 cut(s)	73, 99, 146, 168, 245, 251, 258, 283
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DraI	TTTAAA	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	188
EcoT22I	ATGCAT	1 cut(s)	28
FaeI	CATG	3 cut(s)	26, 43, 50
FaiI	YATR	5 cut(s)	24, 41, 48, 111, 279
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	22, 39, 46
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	73, 258
Hin1II	CATG	3 cut(s)	26, 43, 50
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HphI	GGTGA	2 cut(s)	101, 167
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	2 cut(s)	26, 290
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	26, 43, 50
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	2 cut(s)	265, 269
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	104, 317
MluCI	AATT	1 cut(s)	65
MnlI	CCTC	5 cut(s)	84, 110, 187, 232, 248
Mph1103I	ATGCAT	1 cut(s)	28
MseI	TTAA	3 cut(s)	30, 68, 210
MslI	CAYNNNNRTG	1 cut(s)	81
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	3 cut(s)	26, 43, 50
NsiI	ATGCAT	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	30, 68, 210
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	43
SetI	ASST	3 cut(s)	148, 204, 333
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	65
SseBI	AGGCCT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	143
StuI	AGGCCT	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	333
TasI	AATT	1 cut(s)	65
Tru1I	TTAA	3 cut(s)	30, 68, 210
Tru9I	TTAA	3 cut(s)	30, 68, 210
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	78, 309
VpaK11BI	GGWCC	1 cut(s)	43
XspI	CTAG	1 cut(s)	143
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.