Rh4AG062900

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
13457153 .. 13462653
5501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG062900.1

Sequence Viewer

Length: 1374 bp
ATGAGAAGTGAACAAACCCAGACAGCCACCCAAGAGAAGGTTAAGCCACAAGTGAAAGTTTCTAACTTGAACCCGAATAAGAAACTGGAGAATATCTCGAAGGACTATGAAGCAGTCATAGGTATCGAAACCCATGTCCAGCTATCCACTCAGACCAAGGCCTTCTGTAGTTGCCCTTATAATTATGGCTCTCAACCAAACACTAGTATTTGCCCCATTTGTATGGGTCTGCCTGGTGCTTTACCGATTTTGAACTTTAAGGTCATTGAGTCTGCTGTGAAAGTTGGACTTGCACTCAATTGCAAATTGGCAATGAACTCGAAGTTTGATCGGAAACAATACTTTTACGCGGACCTTCCAAAGGGTTACCAAATATCCCAGTTTGATGTTCCAATTGCGACTGGTGGCTACATTGATTTGGATATTCCAGTAGAGTTTGGAGGTGGGCATAGGAAGTTCGGCATTACAAGAGTTCACATGGAAGAGGATGCAGGGAAGCTGATGCATTCAGACGACGGAAGTTACTCACAGGAAACGGGGGTGCCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAAATGGTATTGAAGCTGCAGAATATGCTGCAGAAATACAGAGGGTGGTTCGGTATTTGGGAGTGAGTAATGGCAATATGCAAGAAGGTTCACTTCGTTGTGATGTCAATGTTTCTGTTCGACCAATTGGGCAATTACAGTTTGGGACGAAGGTGGAGATAAAAAATTTGAACGCTTTTTCGGCAGTGAGCAGGGCAATTGATTATGAAATTTCGAGGCAGGTGCTTCTTCATAGTCAAGGCCAAGACAAAGAAATTGTACAGGAAACACGGCTATGGGAAGAAGGAGCTCAGAAAACAGTTACAATGAGGAAGAAAGAAGGACTATCTGATTACCGATATTTTCCTGAACCAGACCTTCCAGGAGTTTTCCTCACCCAGGACTATGTTGATGGTATTCATAACTCTTTGCCTGAACTTCCAGAAATGAAGCGTCGGAGGTATGAAAAGATGGGCCTAAGCATGCAGGACATTCTTTTCCTTGCTAACGACATGAATGTTGCAGAATTTTTTGATACTACTATTAAGAAGGGTGCTGAGGCGAAGCTAGCTGCCAACTGGATAATGAGTGATATTGCTGCCTATATGAAAAATGAAGAGTTGTCCATCACTGAGGTCAAGCTTTCCCCTCAAGAGTTGGCTGAGTTAATAGCTTCCATAAAAGATGGGACTATTAGTGGGAAGATAGGGAAACAGATATTGTTTGAGCTTCTAGCAAAGGGTGGTACTGTGAAGGGACTGATAGAAGAAAAAGATTTAGTTCAGGCAAGTTGTTTATTGTATTGCCAGGCTCTTTAA

Protein Analysis

457

Amino Acids

50.88

Weight (kDa)

5.44

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GatB_N PF02934 39 - 322 3.1e-109 GatB/GatE catalytic domain
GatB_Yqey PF02637 361 - 449 4.3e-25 GatB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AarI CACCTGC 1 cut(s) 787
Acc36I ACCTGC 1 cut(s) 787
AccB1I GGYRCC 1 cut(s) 541
AccII CGCG 1 cut(s) 350
AciI CCGC 1 cut(s) 350
AcsI RAATTY 3 cut(s) 742, 786, 1082
AfaI GTAC 2 cut(s) 837, 1303
AfiI CCNNNNNNNGG 3 cut(s) 37, 361, 955
AgsI TTSAA 4 cut(s) 70, 253, 590, 748
AhlI ACTAGT 1 cut(s) 203
AjnI CCWGG 4 cut(s) 232, 937, 954, 1362
AluBI AGCT 9 cut(s) 142, 499, 593, 866, 1123, 1127, 1198, 1229, 1285
AluI AGCT 9 cut(s) 142, 499, 593, 866, 1123, 1127, 1198, 1229, 1285
Alw21I GWGCWC 1 cut(s) 868
AoxI GGCC 3 cut(s) 159, 817, 1030
ApeKI GCWGC 4 cut(s) 593, 605, 1127, 1154
ApoI RAATTY 3 cut(s) 742, 786, 1082
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AspS9I GGNCC 2 cut(s) 352, 1030
AsuHPI GGTGA 1 cut(s) 943
AsuNHI GCTAGC 1 cut(s) 1123
AvaII GGWCC 1 cut(s) 352
BaeGI GKGCMC 1 cut(s) 546
BanI GGYRCC 1 cut(s) 541
BanII GRGCYC 1 cut(s) 868
Bbv12I GWGCWC 1 cut(s) 868
BbvCI CCTCAGC 1 cut(s) 1113
BbvI GCAGC 4 cut(s) 580, 592, 1114, 1141
BccI CCATC 4 cut(s) 962, 1021, 1190, 1235
BceAI ACGGC 1 cut(s) 863
BcgI CGANNNNNNTGC 4 cut(s) 300, 334, 781, 815
BciT130I CCWGG 4 cut(s) 234, 939, 956, 1364
BcuI ACTAGT 1 cut(s) 203
BfaI CTAG 3 cut(s) 204, 1124, 1289
BfmI CTRYAG 3 cut(s) 166, 594, 606
BfuAI ACCTGC 1 cut(s) 787
BisI GCNGC 4 cut(s) 594, 606, 1128, 1155
BlsI GCNGC 4 cut(s) 595, 607, 1129, 1156
Bme1390I CCNGG 4 cut(s) 234, 939, 956, 1364
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 352, 1030
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 4 cut(s) 234, 939, 956, 1364
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 2 cut(s) 478, 492
BmtI GCTAGC 1 cut(s) 1127
BmuI ACTGGG 1 cut(s) 373
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 933, 965
BpmI CTGGAG 1 cut(s) 107
Bpu10I CCTNAGC 2 cut(s) 1034, 1113
BpuEI CTTGAG 2 cut(s) 572, 1191
BsaJI CCNNGG 2 cut(s) 156, 954
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 361, 955
Bse1I ACTGG 5 cut(s) 90, 379, 406, 428, 1139
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 4 cut(s) 234, 939, 956, 1364
BseDI CCNNGG 2 cut(s) 156, 954
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 3 cut(s) 37, 361, 955
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 5 cut(s) 164, 881, 1104, 1179, 1209
BseNI ACTGG 5 cut(s) 90, 379, 406, 428, 1139
BseSI GKGCMC 1 cut(s) 546
BseXI GCAGC 4 cut(s) 580, 592, 1114, 1141
Bsh1236I CGCG 1 cut(s) 350
BshFI GGCC 3 cut(s) 161, 819, 1032
BshNI GGYRCC 1 cut(s) 541
BsiHKAI GWGCWC 1 cut(s) 868
BslFI GGGAC 3 cut(s) 736, 1258, 1326
BslI CCNNNNNNNGG 3 cut(s) 37, 361, 955
BsmFI GGGAC 3 cut(s) 736, 1258, 1326
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 3 cut(s) 161, 819, 1032
Bsp1286I GDGCHC 2 cut(s) 546, 868
Bsp1407I TGTACA 1 cut(s) 835
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 1 cut(s) 350
BspANI GGCC 3 cut(s) 161, 819, 1032
BspCNI CTCAG 5 cut(s) 163, 880, 1105, 1180, 1210
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 543
BspMAI CTGCAG 2 cut(s) 598, 610
BspMI ACCTGC 1 cut(s) 787
BspOI GCTAGC 1 cut(s) 1127
BspT107I GGYRCC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 318
BsrGI TGTACA 1 cut(s) 835
BsrI ACTGG 5 cut(s) 90, 379, 406, 428, 1139
BssECI CCNNGG 2 cut(s) 156, 954
BssMI GATC 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 4 cut(s) 234, 939, 956, 1364
Bst4CI ACNGT 3 cut(s) 717, 877, 1306
Bst6I CTCTTC 2 cut(s) 477, 1167
BstAPI GCANNNNNTGC 1 cut(s) 602
BstAUI TGTACA 1 cut(s) 835
BstC8I GCNNGC 2 cut(s) 1040, 1125
BstDEI CTNAG 6 cut(s) 150, 867, 1034, 1113, 1188, 1218
BstEII GGTNACC 1 cut(s) 365
BstENI CCTNNNNNAGG 2 cut(s) 359, 953
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 1 cut(s) 350
BstKTI GATC 1 cut(s) 331
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 3 cut(s) 602, 758, 1124
BstNI CCWGG 4 cut(s) 234, 939, 956, 1364
BstNSI RCATGY 1 cut(s) 1042
BstPI GGTNACC 1 cut(s) 365
BstSCI CCNGG 4 cut(s) 232, 937, 954, 1362
BstSFI CTRYAG 3 cut(s) 166, 594, 606
BstSLI GKGCMC 1 cut(s) 546
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 4 cut(s) 580, 592, 1114, 1141
BstXI CCANNNNNNTGG 1 cut(s) 223
BsuRI GGCC 3 cut(s) 161, 819, 1032
BtsCI GGATG 1 cut(s) 493
BtsI GCAGTG 1 cut(s) 768
BtsIMutI CAGTG 2 cut(s) 768, 1185
BveI ACCTGC 1 cut(s) 787
Cac8I GCNNGC 2 cut(s) 1040, 1125
Cfr13I GGNCC 2 cut(s) 352, 1030
CseI GACGC 1 cut(s) 998
Csp6I GTAC 2 cut(s) 836, 1302
CviAII CATG 4 cut(s) 134, 478, 1039, 1069
CviQI GTAC 2 cut(s) 836, 1302
DdeI CTNAG 6 cut(s) 150, 867, 1034, 1113, 1188, 1218
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
Eam1104I CTCTTC 2 cut(s) 477, 1167
EarI CTCTTC 2 cut(s) 477, 1167
Ecl136II GAGCTC 1 cut(s) 866
Eco130I CCWWGG 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 868
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 866
Eco91I GGTNACC 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 866
EcoNI CCTNNNNNAGG 2 cut(s) 359, 953
EcoO65I GGTNACC 1 cut(s) 365
EcoRII CCWGG 4 cut(s) 232, 937, 954, 1362
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 868
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 4 cut(s) 137, 481, 1042, 1072
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 654, 686
FaqI GGGAC 3 cut(s) 736, 1258, 1326
FatI CATG 4 cut(s) 133, 477, 1038, 1068
Fnu4HI GCNGC 4 cut(s) 594, 606, 1128, 1155
FokI GGATG 1 cut(s) 500
FriOI GRGCYC 1 cut(s) 868
Fsp4HI GCNGC 4 cut(s) 594, 606, 1128, 1155
FspBI CTAG 3 cut(s) 204, 1124, 1289
GluI GCNGC 4 cut(s) 594, 606, 1128, 1155
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 3 cut(s) 161, 819, 1032
HgaI GACGC 1 cut(s) 998
Hin1II CATG 4 cut(s) 137, 481, 1042, 1072
HindIII AAGCTT 1 cut(s) 1196
HinfI GANTC 1 cut(s) 269
HphI GGTGA 1 cut(s) 943
Hpy166II GTNNAC 3 cut(s) 11, 475, 668
Hpy188I TCNGA 7 cut(s) 153, 333, 511, 565, 870, 907, 1014
Hpy188III TCNNGA 4 cut(s) 97, 923, 998, 1208
Hpy8I GTNNAC 3 cut(s) 11, 475, 668
Hpy99I CGWCG 2 cut(s) 518, 1014
HpyCH4III ACNGT 3 cut(s) 717, 877, 1306
HpyCH4V TGCA 9 cut(s) 293, 303, 491, 505, 596, 608, 658, 1042, 1079
HpyF10VI GCNNNNNNNGC 3 cut(s) 602, 758, 1124
HpyF3I CTNAG 6 cut(s) 150, 867, 1034, 1113, 1188, 1218
Hsp92II CATG 4 cut(s) 137, 481, 1042, 1072
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 1 cut(s) 863
Lsp1109I GCAGC 4 cut(s) 580, 592, 1114, 1141
LweI GCATC 2 cut(s) 478, 492
MaeI CTAG 3 cut(s) 204, 1124, 1289
MaeIII GTNAC 3 cut(s) 365, 521, 877
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 7 cut(s) 494, 797, 869, 901, 1184, 1270, 1334
MfeI CAATTG 4 cut(s) 298, 393, 702, 774
MhlI GDGCHC 2 cut(s) 546, 868
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 2 cut(s) 265, 992
Mph1103I ATGCAT 1 cut(s) 507
MseI TTAA 5 cut(s) 42, 258, 1101, 1223, 1372
MslI CAYNNNNRTG 2 cut(s) 221, 850
MspR9I CCNGG 4 cut(s) 234, 939, 956, 1364
MunI CAATTG 4 cut(s) 298, 393, 702, 774
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 4 cut(s) 234, 939, 956, 1364
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 602, 758, 1124
NdeII GATC 1 cut(s) 328
NheI GCTAGC 1 cut(s) 1123
NlaIII CATG 4 cut(s) 137, 481, 1042, 1072
NlaIV GGNNCC 1 cut(s) 543
NsiI ATGCAT 1 cut(s) 507
NspI RCATGY 1 cut(s) 1042
PaeI GCATGC 1 cut(s) 1042
PaqCI CACCTGC 1 cut(s) 787
PceI AGGCCT 1 cut(s) 161
PctI GAATGC 1 cut(s) 505
PfoI TCCNGGA 1 cut(s) 937
PkrI GCNGC 4 cut(s) 595, 607, 1129, 1156
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PsiI TTATAA 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 868
Psp6I CCWGG 4 cut(s) 232, 937, 954, 1362
PspEI GGTNACC 1 cut(s) 365
PspGI CCWGG 4 cut(s) 232, 937, 954, 1362
PspN4I GGNNCC 1 cut(s) 543
PspPI GGNCC 2 cut(s) 352, 1030
PstI CTGCAG 2 cut(s) 598, 610
RsaI GTAC 2 cut(s) 837, 1303
RsaNI GTAC 2 cut(s) 836, 1302
RseI CAYNNNNRTG 2 cut(s) 221, 850
SacI GAGCTC 1 cut(s) 868
SaqAI TTAA 5 cut(s) 42, 258, 1101, 1223, 1372
SatI GCNGC 4 cut(s) 594, 606, 1128, 1155
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 2 cut(s) 352, 1030
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 4 cut(s) 234, 939, 956, 1364
SduI GDGCHC 2 cut(s) 546, 868
SfaNI GCATC 2 cut(s) 478, 492
SfcI CTRYAG 3 cut(s) 166, 594, 606
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 2 cut(s) 221, 850
SmlI CTYRAG 2 cut(s) 551, 1206
SmoI CTYRAG 2 cut(s) 551, 1206
SpeI ACTAGT 1 cut(s) 203
SphI GCATGC 1 cut(s) 1042
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 1 cut(s) 350
SspMI CTAG 3 cut(s) 204, 1124, 1289
SstI GAGCTC 1 cut(s) 868
StuI AGGCCT 1 cut(s) 161
StyD4I CCNGG 4 cut(s) 232, 937, 954, 1362
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 3 cut(s) 717, 877, 1306
TaqI TCGA 5 cut(s) 98, 126, 320, 697, 791
TatI WGTACW 1 cut(s) 835
Tru1I TTAA 5 cut(s) 42, 258, 1101, 1223, 1372
Tru9I TTAA 5 cut(s) 42, 258, 1101, 1223, 1372
TscAI CASTG 2 cut(s) 768, 1192
TseI GCWGC 4 cut(s) 593, 605, 1127, 1154
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 2 cut(s) 768, 1192
VpaK11BI GGWCC 1 cut(s) 352
XagI CCTNNNNNAGG 2 cut(s) 359, 953
XapI RAATTY 3 cut(s) 742, 786, 1082
XceI RCATGY 1 cut(s) 1042
XspI CTAG 3 cut(s) 204, 1124, 1289
Zsp2I ATGCAT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.