Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002534

Physical Location & Seq

Genomic Coordinates Reverse (-)

20090707 .. 20095026

Gene Structure 4320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG219200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGAACTCGAAGTTTGATAGGAAACAATACTTTTACGCGGACCTGCCAAAGGGGTACCAAATATCCCAGTTTGATGTTCCAATTGCGACCGGTGGCTACATTGATTTGGATATTCCAGTAGAGTTTGGTGGTGGGCATAGGAAGTTTGGCATTACAAGAGTTCACATGGAAGAGGATGCAGGGAAGCTGATGCATTCAGACGATGGAAGTTACTCACAGGAAAGTACATTTCGCTTTGTTGATCTAAATAGAGCGGGTGTGCCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAAATGGTATTGAAGCTGCAGAATATGCTGCAGAAATACAGAGGGTGGTTCGGTATTTGGGAGTGAGTAATGGCAATATGCAAGAAGGTTCACTTCGTTGTGATGTCAATGTTTCTATTCGACCAATTGGGCAATTACAGTTTGGGACGAAGGTGGAGATAAAAAATTTGAACGCTTTTTCAGCAGTGAGCAGGGCAATTGACTATGAAATTTCGAGGCAGGTGCTTCTTCATAGTCAAGGCCAAGACAAAGAAATTGTACAGGAAACACGACTATGGGACGAAGGAGCTCAGAAAACAGTTACAATGAGGAAGAAAGAAGGACTATCTGATTACCGATATTTTCCCGAACCAGACCTTCCAGGAGTTTTCCTCACCCAGGACTATGTTGATGGTATTCATAACTCTTTGCGTGAACTTCCAGAAATGAAGCGTCGAAGGTATGAAAAGATGGGCCTAAGCATGCAGGACATTCTTTTCCTTGCTAATGACATGAATGTTGCAGAATTTTTTGATACCACTATTAAGAAGGGTGCTAATGCGAAGCTAGCTGCCAACTGGATAATGAGTGATATTGCTGCCTATATGAAAAATGAAGAGTTGTCCATCAATGAGGTCAAGCTTTCCCCCCAAGAGTTGGCTGAGTTAATAGCTTTCATAAAAGATGGGACTATTAGTGGGAAGATAGGGAAACAGATATTGTTTGAGCTACTAGCAAAAGGTGGTACTGTGAAGGGACTGATAGAAGAAAAAGATTTAGTTCAGATTGTAGATCCCGCTGAGATTGAGAAAATGGTGGAAAAGGTGTTGTCAGAGAATCCAAAGCAGCTGGACCAATATCGTGGTGGAAAGACTAAGCTGCAAGGTTATTTTGCTGGCCAGATAATGAAACTATCGAAAGGAAAAGCAAATCCAGGGCTTCTAAACAAGATTCTGTTAGAGAAATTAAATGCCAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050567 GO:0070681 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

GatB_N GatB_Yqey

Protein Analysis

418

Amino Acids

47.02

Weight (kDa)

5.78

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	2 - 228	8e-84	GatB/GatE catalytic domain
GatB_Yqey	PF02637	267 - 414	3.9e-52	GatB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48520 AT1G48520 AT1G48520
fragaria_vesca	FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030
malus_domestica	MD13G1223700.v1.1 MD16G1228500.v1.1
prunus_persica	Prupe.1G050600_v2.0.a1
pyrus_communis	pycom13g19770 pycom16g19100
rosa_chinensis	RchiOBHm_Chr4g0395911 RchiOBHm_Chr7g0203561
rosa_laevigata	RLG00000003518 RLG00000009588
rosa_multiflora	Rmu_sc0001103.1_g000011 Rmu_sc0007757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253680 Rroxscaffold_5G00340680
rosa_rugosa	Rorug03G0353500.1 Rorug03G0353600 Rorug07G0077000
rosa_samantha	Rh4AG062900 Rh4AG063900 Rh4AG066700 Rh4BG062600 Rh4CG068900 Rh4DG058900 Rh7AG206600 Rh7BG206100 Rh7BG337200 Rh7CG219200 Rh7DG213800
rosa_wichuraiana	Rw4G005170 Rw7G018030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	505
Acc36I	ACCTGC	2 cut(s)	51, 505
Acc65I	GGTACC	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	54
AccB7I	CCANNNNNTGG	1 cut(s)	931
AccBSI	CCGCTC	1 cut(s)	254
AccII	CGCG	1 cut(s)	38
AciI	CCGC	3 cut(s)	38, 254, 1071
AclWI	GGATC	1 cut(s)	1061
AcoI	YGGCCR	1 cut(s)	1171
AcsI	RAATTY	3 cut(s)	460, 504, 800
AfaI	GTAC	4 cut(s)	56, 226, 555, 1021
AfiI	CCNNNNNNNGG	3 cut(s)	49, 673, 931
AgeI	ACCGGT	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	308, 466
AjnI	CCWGG	3 cut(s)	655, 672, 1207
Alw21I	GWGCWC	1 cut(s)	586
AlwI	GGATC	1 cut(s)	1061
AoxI	GGCC	3 cut(s)	535, 748, 1171
ApeKI	GCWGC	6 cut(s)	311, 323, 845, 872, 1120, 1153
ApoI	RAATTY	3 cut(s)	460, 504, 800
AsiGI	ACCGGT	1 cut(s)	89
Asp718I	GGTACC	1 cut(s)	54
AspS9I	GGNCC	3 cut(s)	40, 748, 1126
AsuHPI	GGTGA	1 cut(s)	661
AsuNHI	GCTAGC	1 cut(s)	841
AvaII	GGWCC	2 cut(s)	40, 1126
BaeGI	GKGCMC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	1173
BanI	GGYRCC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	586
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	6 cut(s)	298, 310, 832, 859, 1132, 1140
BccI	CCATC	5 cut(s)	197, 680, 739, 908, 953
BcgI	CGANNNNNNTGC	2 cut(s)	499, 533
BciT130I	CCWGG	3 cut(s)	657, 674, 1209
BfaI	CTAG	2 cut(s)	842, 1007
BfmI	CTRYAG	2 cut(s)	312, 324
BfuAI	ACCTGC	2 cut(s)	51, 505
BisI	GCNGC	6 cut(s)	312, 324, 846, 873, 1121, 1154
BlsI	GCNGC	6 cut(s)	313, 325, 847, 874, 1122, 1155
Bme1390I	CCNGG	3 cut(s)	657, 674, 1209
Bme18I	GGWCC	2 cut(s)	40, 1126
BmgT120I	GGNCC	3 cut(s)	40, 748, 1126
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	3 cut(s)	657, 674, 1209
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	166, 180
BmtI	GCTAGC	1 cut(s)	845
BmuI	ACTGGG	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
Bpu10I	CCTNAGC	1 cut(s)	752
BpuEI	CTTGAG	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	672, 1208
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 673, 931
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	3 cut(s)	67, 116, 857
BseBI	CCWGG	3 cut(s)	657, 674, 1209
BseDI	CCNNGG	2 cut(s)	672, 1208
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	3 cut(s)	49, 673, 931
BseMII	CTCAG	3 cut(s)	599, 927, 1065
BseNI	ACTGG	3 cut(s)	67, 116, 857
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	6 cut(s)	298, 310, 832, 859, 1132, 1140
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	537, 750, 1173
BshNI	GGYRCC	1 cut(s)	54
BshTI	ACCGGT	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	4 cut(s)	454, 587, 976, 1044
BslI	CCNNNNNNNGG	3 cut(s)	49, 673, 931
BsmFI	GGGAC	4 cut(s)	454, 587, 976, 1044
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	537, 750, 1173
Bsp1286I	GDGCHC	2 cut(s)	264, 586
Bsp1407I	TGTACA	1 cut(s)	553
Bsp143I	GATC	2 cut(s)	241, 1066
BspACI	CCGC	3 cut(s)	38, 254, 1071
BspANI	GGCC	3 cut(s)	537, 750, 1173
BspCNI	CTCAG	3 cut(s)	598, 928, 1066
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	56
BspMAI	CTGCAG	2 cut(s)	316, 328
BspMI	ACCTGC	2 cut(s)	51, 505
BspOI	GCTAGC	1 cut(s)	845
BspPI	GGATC	1 cut(s)	1061
BspT107I	GGYRCC	1 cut(s)	54
BsrBI	CCGCTC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	553
BsrI	ACTGG	3 cut(s)	67, 116, 857
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	672, 1208
BssMI	GATC	2 cut(s)	241, 1066
Bst2UI	CCWGG	3 cut(s)	657, 674, 1209
Bst4CI	ACNGT	3 cut(s)	435, 595, 1024
Bst6I	CTCTTC	2 cut(s)	165, 885
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	553
BstC8I	GCNNGC	3 cut(s)	758, 843, 1171
BstDEI	CTNAG	5 cut(s)	585, 752, 936, 1074, 1149
BstENI	CCTNNNNNAGG	2 cut(s)	47, 671
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	2 cut(s)	244, 1069
BstMBI	GATC	2 cut(s)	241, 1066
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 476, 842
BstNI	CCWGG	3 cut(s)	657, 674, 1209
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	3 cut(s)	655, 672, 1207
BstSFI	CTRYAG	2 cut(s)	312, 324
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	6 cut(s)	298, 310, 832, 859, 1132, 1140
BstX2I	RGATCY	1 cut(s)	1066
BstXI	CCANNNNNNTGG	1 cut(s)	1136
BstYI	RGATCY	1 cut(s)	1066
BsuRI	GGCC	3 cut(s)	537, 750, 1173
BtsCI	GGATG	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	486
BveI	ACCTGC	2 cut(s)	51, 505
Cac8I	GCNNGC	3 cut(s)	758, 843, 1171
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	3 cut(s)	40, 748, 1126
CseI	GACGC	1 cut(s)	716
Csp6I	GTAC	4 cut(s)	55, 225, 554, 1020
CspAI	ACCGGT	1 cut(s)	89
CviAII	CATG	3 cut(s)	166, 757, 787
CviQI	GTAC	4 cut(s)	55, 225, 554, 1020
DdeI	CTNAG	5 cut(s)	585, 752, 936, 1074, 1149
DpnI	GATC	2 cut(s)	243, 1068
DpnII	GATC	2 cut(s)	241, 1066
EaeI	YGGCCR	1 cut(s)	1171
Eam1104I	CTCTTC	2 cut(s)	165, 885
EarI	CTCTTC	2 cut(s)	165, 885
Ecl136II	GAGCTC	1 cut(s)	584
Eco24I	GRGCYC	1 cut(s)	586
Eco47I	GGWCC	2 cut(s)	40, 1126
Eco53kI	GAGCTC	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	584
EcoNI	CCTNNNNNAGG	2 cut(s)	47, 671
EcoRII	CCWGG	3 cut(s)	655, 672, 1207
EcoT22I	ATGCAT	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	586
FaeI	CATG	3 cut(s)	169, 760, 790
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	4 cut(s)	454, 587, 976, 1044
FatI	CATG	3 cut(s)	165, 756, 786
FauI	CCCGC	2 cut(s)	247, 1078
Fnu4HI	GCNGC	6 cut(s)	312, 324, 846, 873, 1121, 1154
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	6 cut(s)	312, 324, 846, 873, 1121, 1154
FspBI	CTAG	2 cut(s)	842, 1007
GluI	GCNGC	6 cut(s)	312, 324, 846, 873, 1121, 1154
HaeIII	GGCC	3 cut(s)	537, 750, 1173
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	716
Hin1II	CATG	3 cut(s)	169, 760, 790
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	2 cut(s)	1111, 1225
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	3 cut(s)	163, 386, 710
Hpy188I	TCNGA	6 cut(s)	199, 283, 588, 625, 1059, 1108
Hpy188III	TCNNGA	2 cut(s)	641, 716
Hpy8I	GTNNAC	3 cut(s)	163, 386, 710
Hpy99I	CGWCG	1 cut(s)	732
HpyAV	CCTTC	8 cut(s)	374, 439, 572, 608, 662, 726, 817, 1021
HpyCH4III	ACNGT	3 cut(s)	435, 595, 1024
HpyCH4V	TGCA	8 cut(s)	179, 193, 314, 326, 376, 760, 797, 1156
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 476, 842
HpyF3I	CTNAG	5 cut(s)	585, 752, 936, 1074, 1149
Hsp92II	CATG	3 cut(s)	169, 760, 790
KpnI	GGTACC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	241, 1066
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	6 cut(s)	298, 310, 832, 859, 1132, 1140
LweI	GCATC	2 cut(s)	166, 180
MaeI	CTAG	2 cut(s)	842, 1007
MaeIII	GTNAC	2 cut(s)	209, 595
MalI	GATC	2 cut(s)	243, 1068
MbiI	CCGCTC	1 cut(s)	254
MboI	GATC	2 cut(s)	241, 1066
MboII	GAAGA	6 cut(s)	182, 515, 619, 902, 988, 1052
MfeI	CAATTG	3 cut(s)	81, 420, 492
MflI	RGATCY	1 cut(s)	1066
MhlI	GDGCHC	2 cut(s)	264, 586
MlsI	TGGCCA	1 cut(s)	1173
MluCI	AATT	9 cut(s)	81, 420, 428, 460, 492, 504, 549, 800, 1238
MluNI	TGGCCA	1 cut(s)	1173
MnlI	CCTC	6 cut(s)	166, 330, 504, 597, 677, 901
Mox20I	TGGCCA	1 cut(s)	1173
Mph1103I	ATGCAT	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	1173
MseI	TTAA	3 cut(s)	819, 941, 1241
MslI	CAYNNNNRTG	1 cut(s)	568
Msp20I	TGGCCA	1 cut(s)	1173
MspA1I	CMGCKG	2 cut(s)	1073, 1123
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	3 cut(s)	657, 674, 1209
MunI	CAATTG	3 cut(s)	81, 420, 492
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	3 cut(s)	657, 674, 1209
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	320, 476, 842
NdeII	GATC	2 cut(s)	241, 1066
NheI	GCTAGC	1 cut(s)	841
NlaIII	CATG	3 cut(s)	169, 760, 790
NlaIV	GGNNCC	1 cut(s)	56
NsiI	ATGCAT	1 cut(s)	195
NspI	RCATGY	1 cut(s)	760
PaeI	GCATGC	1 cut(s)	760
PaqCI	CACCTGC	1 cut(s)	505
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	1111, 1225
PflMI	CCANNNNNTGG	1 cut(s)	931
PfoI	TCCNGGA	1 cut(s)	655
PinAI	ACCGGT	1 cut(s)	89
PkrI	GCNGC	6 cut(s)	313, 325, 847, 874, 1122, 1155
Psp124BI	GAGCTC	1 cut(s)	586
Psp6I	CCWGG	3 cut(s)	655, 672, 1207
PspGI	CCWGG	3 cut(s)	655, 672, 1207
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	3 cut(s)	40, 748, 1126
PstI	CTGCAG	2 cut(s)	316, 328
PsuI	RGATCY	1 cut(s)	1066
PvuII	CAGCTG	1 cut(s)	1123
RsaI	GTAC	4 cut(s)	56, 226, 555, 1021
RsaNI	GTAC	4 cut(s)	55, 225, 554, 1020
RseI	CAYNNNNRTG	1 cut(s)	568
SacI	GAGCTC	1 cut(s)	586
SaqAI	TTAA	3 cut(s)	819, 941, 1241
SatI	GCNGC	6 cut(s)	312, 324, 846, 873, 1121, 1154
Sau3AI	GATC	2 cut(s)	241, 1066
Sau96I	GGNCC	3 cut(s)	40, 748, 1126
ScrFI	CCNGG	3 cut(s)	657, 674, 1209
SduI	GDGCHC	2 cut(s)	264, 586
SfaNI	GCATC	2 cut(s)	166, 180
SfcI	CTRYAG	2 cut(s)	312, 324
SinI	GGWCC	2 cut(s)	40, 1126
SmiMI	CAYNNNNRTG	1 cut(s)	568
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SphI	GCATGC	1 cut(s)	760
Sse9I	AATT	9 cut(s)	81, 420, 428, 460, 492, 504, 549, 800, 1238
SsiI	CCGC	3 cut(s)	38, 254, 1071
SspMI	CTAG	2 cut(s)	842, 1007
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	3 cut(s)	655, 672, 1207
TaaI	ACNGT	3 cut(s)	435, 595, 1024
TaqI	TCGA	5 cut(s)	8, 415, 509, 730, 1190
TasI	AATT	9 cut(s)	81, 420, 428, 460, 492, 504, 549, 800, 1238
TatI	WGTACW	2 cut(s)	224, 553
TfiI	GAWTC	2 cut(s)	1111, 1225
Tru1I	TTAA	3 cut(s)	819, 941, 1241
Tru9I	TTAA	3 cut(s)	819, 941, 1241
TscAI	CASTG	1 cut(s)	486
TseI	GCWGC	6 cut(s)	311, 323, 845, 872, 1120, 1153
TspRI	CASTG	1 cut(s)	486
Van91I	CCANNNNNTGG	1 cut(s)	931
VpaK11BI	GGWCC	2 cut(s)	40, 1126
XagI	CCTNNNNNAGG	2 cut(s)	47, 671
XapI	RAATTY	3 cut(s)	460, 504, 800
XceI	RCATGY	1 cut(s)	760
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1136
XspI	CTAG	2 cut(s)	842, 1007
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.