Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002534

Physical Location & Seq

Genomic Coordinates Reverse (-)

20603592 .. 20607544

Gene Structure 3953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG213800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGAAATGGTATTGAAGCTGCAGAATATGCTGCAGAAATACAGAGGGTGGTTCGGTATTTGGGAGTGAGTAATGGCAATATGCAAGAAGGTTCACTTCGTTGTGATGTCAATGTTTCTATTCGACCAATTGGGCAATTACAGTTTGGGACGAAGGTGGAGATAAAAAATTTGAACGCTTTTTCAGCAGTGAGCAGGGCAATTGACTATGAAATTTCGAGGCAGGTGCTTCTTCATAGTCAAGGCCAAGACAAAGAAATTGTACAGGAAACACGACTATGGGACGAAGGAGCTCAGAAAACAGTTACAATGAGGAAGAAAGAAGGACTATCTGATTACCGATATTTTCCCGAACCAGACCTTCCAGGAGTTTTCCTCACCCAGGACTATGTTGATGGTATTCATAACTCTTTGCCTGAACTTCCAGAAATGAAGCGTCGAAGGTATGAAAAGATGGGCCTAAGCATGCAGGACATTCTTTTCCTTGCTAATGACATGAATGTTGCAGAATTTTTTGATACCACTATTAAGAAGGGTGCTGATGCGAAGCTAGCTGCCAACTGGATAATGAGTGATTTTGCTGCCTATATGAAAAATGAAGAGTTGTCCATCAATGAGGTCAAGCTTTCCCCCCAAGAGTTGGCTGAGTTAATAGCTTTCATAAAAGATGGGACTATTAGTGGGAAGATAGGGAAACAGATATTGTTTGAGCTACTAGCAAAAGGTGGTACTGTGAAGGGACTGATAGAAGAAAAAGATTTAGTTCAGATTGTAGATCCCGCTGAGATTGAGAAAATGGTGGAAAAGGTGTTGTCAGAGAATCCAAAGCAGCTGGACCAATATCGTGGTGGAAAGACTAAGCTGCAAGGTTATTTTGCTGGCCAGATAATGAAACTATCGAAAGGAAAAGCAAATCCAGGGCTTCTAAACAAGATTCTGTTAGAGAAATTAAATGCCAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050567 GO:0070681 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

GatB_N GatB_Yqey

Protein Analysis

321

Amino Acids

36.05

Weight (kDa)

6.28

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	1 - 131	5.6e-44	GatB/GatE catalytic domain
GatB_Yqey	PF02637	170 - 317	7.3e-53	GatB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48520 AT1G48520 AT1G48520
fragaria_vesca	FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030
malus_domestica	MD13G1223700.v1.1 MD16G1228500.v1.1
prunus_persica	Prupe.1G050600_v2.0.a1
pyrus_communis	pycom13g19770 pycom16g19100
rosa_chinensis	RchiOBHm_Chr4g0395911 RchiOBHm_Chr7g0203561
rosa_laevigata	RLG00000003518 RLG00000009588
rosa_multiflora	Rmu_sc0001103.1_g000011 Rmu_sc0007757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253680 Rroxscaffold_5G00340680
rosa_rugosa	Rorug03G0353500.1 Rorug03G0353600 Rorug07G0077000
rosa_samantha	Rh4AG062900 Rh4AG063900 Rh4AG066700 Rh4BG062600 Rh4CG068900 Rh4DG058900 Rh7AG206600 Rh7BG206100 Rh7BG337200 Rh7CG219200 Rh7DG213800
rosa_wichuraiana	Rw4G005170 Rw7G018030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccB7I	CCANNNNNTGG	1 cut(s)	640
AciI	CCGC	1 cut(s)	780
AclWI	GGATC	1 cut(s)	770
AcoI	YGGCCR	1 cut(s)	880
AcsI	RAATTY	3 cut(s)	169, 213, 509
AfaI	GTAC	2 cut(s)	264, 730
AfiI	CCNNNNNNNGG	2 cut(s)	382, 640
AgsI	TTSAA	2 cut(s)	17, 175
AjnI	CCWGG	3 cut(s)	364, 381, 916
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	770
AoxI	GGCC	3 cut(s)	244, 457, 880
ApeKI	GCWGC	6 cut(s)	20, 32, 554, 581, 829, 862
ApoI	RAATTY	3 cut(s)	169, 213, 509
AspS9I	GGNCC	2 cut(s)	457, 835
AsuHPI	GGTGA	1 cut(s)	370
AsuNHI	GCTAGC	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	835
BalI	TGGCCA	1 cut(s)	882
BanII	GRGCYC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	6 cut(s)	7, 19, 541, 568, 841, 849
BccI	CCATC	4 cut(s)	389, 448, 617, 662
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	3 cut(s)	366, 383, 918
BfaI	CTAG	2 cut(s)	551, 716
BfmI	CTRYAG	2 cut(s)	21, 33
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	6 cut(s)	21, 33, 555, 582, 830, 863
BlsI	GCNGC	6 cut(s)	22, 34, 556, 583, 831, 864
Bme1390I	CCNGG	3 cut(s)	366, 383, 918
Bme18I	GGWCC	1 cut(s)	835
BmgT120I	GGNCC	2 cut(s)	457, 835
BmrFI	CCNGG	3 cut(s)	366, 383, 918
BmsI	GCATC	1 cut(s)	532
BmtI	GCTAGC	1 cut(s)	554
BplI	GAGNNNNNCTC	2 cut(s)	360, 392
Bpu10I	CCTNAGC	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	381, 917
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 640
Bse1I	ACTGG	1 cut(s)	566
BseBI	CCWGG	3 cut(s)	366, 383, 918
BseDI	CCNNGG	2 cut(s)	381, 917
BseLI	CCNNNNNNNGG	2 cut(s)	382, 640
BseMII	CTCAG	3 cut(s)	308, 636, 774
BseNI	ACTGG	1 cut(s)	566
BseXI	GCAGC	6 cut(s)	7, 19, 541, 568, 841, 849
BshFI	GGCC	3 cut(s)	246, 459, 882
BsiHKAI	GWGCWC	1 cut(s)	295
BslFI	GGGAC	4 cut(s)	163, 296, 685, 753
BslI	CCNNNNNNNGG	2 cut(s)	382, 640
BsmFI	GGGAC	4 cut(s)	163, 296, 685, 753
BsnI	GGCC	3 cut(s)	246, 459, 882
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	775
BspACI	CCGC	1 cut(s)	780
BspANI	GGCC	3 cut(s)	246, 459, 882
BspCNI	CTCAG	3 cut(s)	307, 637, 775
BspMAI	CTGCAG	2 cut(s)	25, 37
BspMI	ACCTGC	1 cut(s)	214
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	1 cut(s)	770
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	566
BssECI	CCNNGG	2 cut(s)	381, 917
BssMI	GATC	1 cut(s)	775
Bst2UI	CCWGG	3 cut(s)	366, 383, 918
Bst4CI	ACNGT	3 cut(s)	144, 304, 733
Bst6I	CTCTTC	1 cut(s)	594
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	467, 552, 880
BstDEI	CTNAG	5 cut(s)	294, 461, 645, 783, 858
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstKTI	GATC	1 cut(s)	778
BstMBI	GATC	1 cut(s)	775
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 185, 551
BstNI	CCWGG	3 cut(s)	366, 383, 918
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	3 cut(s)	364, 381, 916
BstSFI	CTRYAG	2 cut(s)	21, 33
BstV1I	GCAGC	6 cut(s)	7, 19, 541, 568, 841, 849
BstX2I	RGATCY	1 cut(s)	775
BstXI	CCANNNNNNTGG	1 cut(s)	845
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	3 cut(s)	246, 459, 882
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	3 cut(s)	467, 552, 880
Cfr13I	GGNCC	2 cut(s)	457, 835
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	263, 729
CviAII	CATG	2 cut(s)	466, 496
CviQI	GTAC	2 cut(s)	263, 729
DdeI	CTNAG	5 cut(s)	294, 461, 645, 783, 858
DpnI	GATC	1 cut(s)	777
DpnII	GATC	1 cut(s)	775
EaeI	YGGCCR	1 cut(s)	880
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	835
Eco53kI	GAGCTC	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoRII	CCWGG	3 cut(s)	364, 381, 916
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	2 cut(s)	469, 499
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	4 cut(s)	163, 296, 685, 753
FatI	CATG	2 cut(s)	465, 495
FauI	CCCGC	1 cut(s)	787
Fnu4HI	GCNGC	6 cut(s)	21, 33, 555, 582, 830, 863
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	6 cut(s)	21, 33, 555, 582, 830, 863
FspBI	CTAG	2 cut(s)	551, 716
GluI	GCNGC	6 cut(s)	21, 33, 555, 582, 830, 863
HaeIII	GGCC	3 cut(s)	246, 459, 882
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	469, 499
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	2 cut(s)	820, 934
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	4 cut(s)	297, 334, 768, 817
Hpy188III	TCNNGA	2 cut(s)	350, 425
Hpy8I	GTNNAC	1 cut(s)	95
Hpy99I	CGWCG	1 cut(s)	441
HpyAV	CCTTC	8 cut(s)	83, 148, 281, 317, 371, 435, 526, 730
HpyCH4III	ACNGT	3 cut(s)	144, 304, 733
HpyCH4V	TGCA	6 cut(s)	23, 35, 85, 469, 506, 865
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 185, 551
HpyF3I	CTNAG	5 cut(s)	294, 461, 645, 783, 858
Hsp92II	CATG	2 cut(s)	469, 499
Kzo9I	GATC	1 cut(s)	775
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	6 cut(s)	7, 19, 541, 568, 841, 849
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	2 cut(s)	551, 716
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	777
MboI	GATC	1 cut(s)	775
MboII	GAAGA	5 cut(s)	224, 328, 611, 697, 761
MfeI	CAATTG	2 cut(s)	129, 201
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	882
MluCI	AATT	8 cut(s)	129, 137, 169, 201, 213, 258, 509, 947
MluNI	TGGCCA	1 cut(s)	882
MnlI	CCTC	5 cut(s)	39, 213, 306, 386, 610
Mox20I	TGGCCA	1 cut(s)	882
MscI	TGGCCA	1 cut(s)	882
MseI	TTAA	3 cut(s)	528, 650, 950
MslI	CAYNNNNRTG	1 cut(s)	277
Msp20I	TGGCCA	1 cut(s)	882
MspA1I	CMGCKG	2 cut(s)	782, 832
MspR9I	CCNGG	3 cut(s)	366, 383, 918
MunI	CAATTG	2 cut(s)	129, 201
MvaI	CCWGG	3 cut(s)	366, 383, 918
MwoI	GCNNNNNNNGC	3 cut(s)	29, 185, 551
NdeII	GATC	1 cut(s)	775
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	2 cut(s)	469, 499
NspI	RCATGY	1 cut(s)	469
PaeI	GCATGC	1 cut(s)	469
PaqCI	CACCTGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	820, 934
PflMI	CCANNNNNTGG	1 cut(s)	640
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	6 cut(s)	22, 34, 556, 583, 831, 864
Psp124BI	GAGCTC	1 cut(s)	295
Psp6I	CCWGG	3 cut(s)	364, 381, 916
PspGI	CCWGG	3 cut(s)	364, 381, 916
PspPI	GGNCC	2 cut(s)	457, 835
PstI	CTGCAG	2 cut(s)	25, 37
PsuI	RGATCY	1 cut(s)	775
PvuII	CAGCTG	1 cut(s)	832
RsaI	GTAC	2 cut(s)	264, 730
RsaNI	GTAC	2 cut(s)	263, 729
RseI	CAYNNNNRTG	1 cut(s)	277
SacI	GAGCTC	1 cut(s)	295
SaqAI	TTAA	3 cut(s)	528, 650, 950
SatI	GCNGC	6 cut(s)	21, 33, 555, 582, 830, 863
Sau3AI	GATC	1 cut(s)	775
Sau96I	GGNCC	2 cut(s)	457, 835
ScrFI	CCNGG	3 cut(s)	366, 383, 918
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	2 cut(s)	21, 33
SinI	GGWCC	1 cut(s)	835
SmiMI	CAYNNNNRTG	1 cut(s)	277
SphI	GCATGC	1 cut(s)	469
Sse9I	AATT	8 cut(s)	129, 137, 169, 201, 213, 258, 509, 947
SsiI	CCGC	1 cut(s)	780
SspMI	CTAG	2 cut(s)	551, 716
SstI	GAGCTC	1 cut(s)	295
StyD4I	CCNGG	3 cut(s)	364, 381, 916
TaaI	ACNGT	3 cut(s)	144, 304, 733
TaqI	TCGA	4 cut(s)	124, 218, 439, 899
TasI	AATT	8 cut(s)	129, 137, 169, 201, 213, 258, 509, 947
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	820, 934
Tru1I	TTAA	3 cut(s)	528, 650, 950
Tru9I	TTAA	3 cut(s)	528, 650, 950
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	6 cut(s)	20, 32, 554, 581, 829, 862
TspRI	CASTG	1 cut(s)	195
Van91I	CCANNNNNTGG	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	835
XagI	CCTNNNNNAGG	1 cut(s)	380
XapI	RAATTY	3 cut(s)	169, 213, 509
XceI	RCATGY	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	845
XspI	CTAG	2 cut(s)	551, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.