Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007757.1

Orthogroup ID

OG0002534

Physical Location & Seq

Genomic Coordinates Forward (+)

6586 .. 11050

Gene Structure 4465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007757.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

atgagaagtcaacaaacccagacagccacccaagagaaggttaagccacaagtgaaagtttctaacttgaacccgaataagaaactggagaatatctcgaaggactatgaagcagtcataggtatcgaaacccatgtccagctatctactcagaccaaggccttttgtagttgcccttataattacggctctcaaccaaacactagtatttgccccatttgtatgggtctgcctggtgctttaccgattttgaactttaaggtcattgagtctgctgtgaaagttgggcttgcactcaagtttggcattacaagagttcacatggaagaggatgcagggaagctgatgcattcagacgatggaagttactcacaggaaagtacatttctctttgttgatctaaatagagcgggtgtgcccttgcttgagattgtttctgaacctgatatgagaaatggtattgaagctgcagaatatgctgcagaaatacagagggtggttcggtatttgggagtgagtaatggcaatatgcaagaaggttcacttcgttgtgatgtcaatgtttctattcgaccaattgggcaattacagtttgggacgaaggtggagataaaaaatttgaacgctttttcagcagtgagcagggcaattgactatgaaatttcgaggcaggtgcttcttcatagtcaaggccaagacaaagaaattgtacaggaaacacgactatgggacgaaggagctcagaaaacagttacaatgaggaagaaagaaggactatctgattaccgatattttcccgaaccagaccttccaggagttttcctcacccaggactatgttaatggtattcataactctttgcctgaacttccagaaatgaagcgtcgaaggtatgaaaagatgggcctaagcatgcaggacattcttttccttgctaatgacatgaatgttgcagaattttttgataccactattaagaagggtgctgatgcgaagctagctgccaactggataatgagtgatattgctgcctatatgaaaaatgaagagttgtccatcaatgaggtcaagctttccccccaagagttggctgagttaatagctttcataaaagatgggactattagtgggaagatagggaaacagatattgtttgagctactagcaaaaggtggtactgtgaagggactgatagaagaaaaagatttagttcagattgtagatcccgctgagattgagaaaatggtggaaaaggtgttgtcagagaatccaaagcagctggaccaatatcgtggtggaaagactaagctgcaaggttattttgctggccagataatgaaactatcgaaaggaaaagcaaatccagggcttctaaacaagattctgttagagaaattaaatgccaaaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016070 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050567 GO:0070681 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

GatB_N GatB_Yqey

Protein Analysis

470

Amino Acids

52.36

Weight (kDa)

6.32

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48520 AT1G48520 AT1G48520
fragaria_vesca	FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030 FvH4_4g05030
malus_domestica	MD13G1223700.v1.1 MD16G1228500.v1.1
prunus_persica	Prupe.1G050600_v2.0.a1
pyrus_communis	pycom13g19770 pycom16g19100
rosa_chinensis	RchiOBHm_Chr4g0395911 RchiOBHm_Chr7g0203561
rosa_laevigata	RLG00000003518 RLG00000009588
rosa_multiflora	Rmu_sc0001103.1_g000011 Rmu_sc0007757.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253680 Rroxscaffold_5G00340680
rosa_rugosa	Rorug03G0353500.1 Rorug03G0353600 Rorug07G0077000
rosa_samantha	Rh4AG062900 Rh4AG063900 Rh4AG066700 Rh4BG062600 Rh4CG068900 Rh4DG058900 Rh7AG206600 Rh7BG206100 Rh7BG337200 Rh7CG219200 Rh7DG213800
rosa_wichuraiana	Rw4G005170 Rw7G018030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AarI	CACCTGC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	661
AccB7I	CCANNNNNTGG	1 cut(s)	1087
AccBSI	CCGCTC	1 cut(s)	410
AciI	CCGC	2 cut(s)	410, 1227
AclWI	GGATC	1 cut(s)	1217
AcoI	YGGCCR	1 cut(s)	1327
AcsI	RAATTY	3 cut(s)	616, 660, 956
AfaI	GTAC	3 cut(s)	382, 711, 1177
AfiI	CCNNNNNNNGG	3 cut(s)	37, 829, 1087
AgsI	TTSAA	4 cut(s)	70, 253, 464, 622
AhlI	ACTAGT	1 cut(s)	203
AjnI	CCWGG	4 cut(s)	232, 811, 828, 1363
Alw21I	GWGCWC	1 cut(s)	742
AlwI	GGATC	1 cut(s)	1217
AoxI	GGCC	4 cut(s)	159, 691, 904, 1327
ApeKI	GCWGC	6 cut(s)	467, 479, 1001, 1028, 1276, 1309
ApoI	RAATTY	3 cut(s)	616, 660, 956
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AspS9I	GGNCC	2 cut(s)	904, 1282
AsuHPI	GGTGA	1 cut(s)	817
AsuNHI	GCTAGC	1 cut(s)	997
AvaII	GGWCC	1 cut(s)	1282
BaeGI	GKGCMC	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	1329
BanII	GRGCYC	1 cut(s)	742
Bbv12I	GWGCWC	1 cut(s)	742
BbvI	GCAGC	6 cut(s)	454, 466, 988, 1015, 1288, 1296
BccI	CCATC	4 cut(s)	353, 895, 1064, 1109
BceAI	ACGGC	1 cut(s)	202
BcgI	CGANNNNNNTGC	2 cut(s)	655, 689
BciT130I	CCWGG	4 cut(s)	234, 813, 830, 1365
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	3 cut(s)	204, 998, 1163
BfmI	CTRYAG	2 cut(s)	468, 480
BfuAI	ACCTGC	1 cut(s)	661
BisI	GCNGC	6 cut(s)	468, 480, 1002, 1029, 1277, 1310
BlsI	GCNGC	6 cut(s)	469, 481, 1003, 1030, 1278, 1311
Bme1390I	CCNGG	4 cut(s)	234, 813, 830, 1365
Bme18I	GGWCC	1 cut(s)	1282
BmgT120I	GGNCC	2 cut(s)	904, 1282
BmrFI	CCNGG	4 cut(s)	234, 813, 830, 1365
BmsI	GCATC	3 cut(s)	322, 336, 979
BmtI	GCTAGC	1 cut(s)	1001
BplI	GAGNNNNNCTC	4 cut(s)	80, 112, 807, 839
BpmI	CTGGAG	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	908
BpuEI	CTTGAG	2 cut(s)	281, 446
BsaJI	CCNNGG	3 cut(s)	156, 828, 1364
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 829, 1087
Bse1I	ACTGG	2 cut(s)	90, 1013
BseBI	CCWGG	4 cut(s)	234, 813, 830, 1365
BseDI	CCNNGG	3 cut(s)	156, 828, 1364
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	3 cut(s)	37, 829, 1087
BseMII	CTCAG	4 cut(s)	164, 755, 1083, 1221
BseNI	ACTGG	2 cut(s)	90, 1013
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	6 cut(s)	454, 466, 988, 1015, 1288, 1296
BshFI	GGCC	4 cut(s)	161, 693, 906, 1329
BsiHKAI	GWGCWC	1 cut(s)	742
BslFI	GGGAC	4 cut(s)	610, 743, 1132, 1200
BslI	CCNNNNNNNGG	3 cut(s)	37, 829, 1087
BsmFI	GGGAC	4 cut(s)	610, 743, 1132, 1200
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	4 cut(s)	161, 693, 906, 1329
Bsp1286I	GDGCHC	2 cut(s)	420, 742
Bsp1407I	TGTACA	1 cut(s)	709
Bsp143I	GATC	2 cut(s)	397, 1222
BspACI	CCGC	2 cut(s)	410, 1227
BspANI	GGCC	4 cut(s)	161, 693, 906, 1329
BspCNI	CTCAG	4 cut(s)	163, 754, 1084, 1222
BspMAI	CTGCAG	2 cut(s)	472, 484
BspMI	ACCTGC	1 cut(s)	661
BspOI	GCTAGC	1 cut(s)	1001
BspPI	GGATC	1 cut(s)	1217
BsrBI	CCGCTC	1 cut(s)	410
BsrGI	TGTACA	1 cut(s)	709
BsrI	ACTGG	2 cut(s)	90, 1013
BssECI	CCNNGG	3 cut(s)	156, 828, 1364
BssMI	GATC	2 cut(s)	397, 1222
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	4 cut(s)	234, 813, 830, 1365
Bst4CI	ACNGT	3 cut(s)	591, 751, 1180
Bst6I	CTCTTC	2 cut(s)	321, 1041
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstAUI	TGTACA	1 cut(s)	709
BstC8I	GCNNGC	4 cut(s)	291, 914, 999, 1327
BstDEI	CTNAG	6 cut(s)	150, 741, 908, 1092, 1230, 1305
BstENI	CCTNNNNNAGG	1 cut(s)	827
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	2 cut(s)	400, 1225
BstMBI	GATC	2 cut(s)	397, 1222
BstMWI	GCNNNNNNNGC	3 cut(s)	476, 632, 998
BstNI	CCWGG	4 cut(s)	234, 813, 830, 1365
BstNSI	RCATGY	1 cut(s)	916
BstSCI	CCNGG	4 cut(s)	232, 811, 828, 1363
BstSFI	CTRYAG	2 cut(s)	468, 480
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	6 cut(s)	454, 466, 988, 1015, 1288, 1296
BstX2I	RGATCY	1 cut(s)	1222
BstXI	CCANNNNNNTGG	2 cut(s)	223, 1292
BstYI	RGATCY	1 cut(s)	1222
BsuRI	GGCC	4 cut(s)	161, 693, 906, 1329
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	1 cut(s)	642
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	4 cut(s)	291, 914, 999, 1327
Cfr13I	GGNCC	2 cut(s)	904, 1282
CseI	GACGC	1 cut(s)	872
Csp6I	GTAC	3 cut(s)	381, 710, 1176
CviAII	CATG	4 cut(s)	134, 322, 913, 943
CviQI	GTAC	3 cut(s)	381, 710, 1176
DdeI	CTNAG	6 cut(s)	150, 741, 908, 1092, 1230, 1305
DpnI	GATC	2 cut(s)	399, 1224
DpnII	GATC	2 cut(s)	397, 1222
EaeI	YGGCCR	1 cut(s)	1327
Eam1104I	CTCTTC	2 cut(s)	321, 1041
EarI	CTCTTC	2 cut(s)	321, 1041
Ecl136II	GAGCTC	1 cut(s)	740
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	742
Eco47I	GGWCC	1 cut(s)	1282
Eco53kI	GAGCTC	1 cut(s)	740
EcoICRI	GAGCTC	1 cut(s)	740
EcoNI	CCTNNNNNAGG	1 cut(s)	827
EcoRII	CCWGG	4 cut(s)	232, 811, 828, 1363
EcoT14I	CCWWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	742
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	4 cut(s)	137, 325, 916, 946
FalI	AAGNNNNNCTT	4 cut(s)	273, 305, 528, 560
FaqI	GGGAC	4 cut(s)	610, 743, 1132, 1200
FatI	CATG	4 cut(s)	133, 321, 912, 942
FauI	CCCGC	2 cut(s)	403, 1234
Fnu4HI	GCNGC	6 cut(s)	468, 480, 1002, 1029, 1277, 1310
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	742
Fsp4HI	GCNGC	6 cut(s)	468, 480, 1002, 1029, 1277, 1310
FspBI	CTAG	3 cut(s)	204, 998, 1163
GluI	GCNGC	6 cut(s)	468, 480, 1002, 1029, 1277, 1310
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	4 cut(s)	161, 693, 906, 1329
HgaI	GACGC	1 cut(s)	872
Hin1II	CATG	4 cut(s)	137, 325, 916, 946
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	1070
HinfI	GANTC	3 cut(s)	269, 1267, 1381
HphI	GGTGA	1 cut(s)	817
Hpy166II	GTNNAC	3 cut(s)	11, 319, 542
Hpy188I	TCNGA	7 cut(s)	153, 355, 439, 744, 781, 1215, 1264
Hpy188III	TCNNGA	3 cut(s)	97, 797, 872
Hpy8I	GTNNAC	3 cut(s)	11, 319, 542
Hpy99I	CGWCG	1 cut(s)	888
HpyCH4III	ACNGT	3 cut(s)	591, 751, 1180
HpyCH4V	TGCA	9 cut(s)	293, 335, 349, 470, 482, 532, 916, 953, 1312
HpyF10VI	GCNNNNNNNGC	3 cut(s)	476, 632, 998
HpyF3I	CTNAG	6 cut(s)	150, 741, 908, 1092, 1230, 1305
Hsp92II	CATG	4 cut(s)	137, 325, 916, 946
Kzo9I	GATC	2 cut(s)	397, 1222
LmnI	GCTCC	1 cut(s)	737
Lsp1109I	GCAGC	6 cut(s)	454, 466, 988, 1015, 1288, 1296
LweI	GCATC	3 cut(s)	322, 336, 979
MaeI	CTAG	3 cut(s)	204, 998, 1163
MaeIII	GTNAC	2 cut(s)	365, 751
MalI	GATC	2 cut(s)	399, 1224
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	2 cut(s)	397, 1222
MboII	GAAGA	6 cut(s)	338, 671, 775, 1058, 1144, 1208
MfeI	CAATTG	2 cut(s)	576, 648
MflI	RGATCY	1 cut(s)	1222
MhlI	GDGCHC	2 cut(s)	420, 742
MlsI	TGGCCA	1 cut(s)	1329
MluCI	AATT	9 cut(s)	181, 576, 584, 616, 648, 660, 705, 956, 1394
MluNI	TGGCCA	1 cut(s)	1329
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	6 cut(s)	322, 486, 660, 753, 833, 1057
Mox20I	TGGCCA	1 cut(s)	1329
Mph1103I	ATGCAT	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	1329
MseI	TTAA	6 cut(s)	42, 258, 840, 975, 1097, 1397
MslI	CAYNNNNRTG	2 cut(s)	221, 724
Msp20I	TGGCCA	1 cut(s)	1329
MspA1I	CMGCKG	2 cut(s)	1229, 1279
MspR9I	CCNGG	4 cut(s)	234, 813, 830, 1365
MunI	CAATTG	2 cut(s)	576, 648
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	4 cut(s)	234, 813, 830, 1365
MwoI	GCNNNNNNNGC	3 cut(s)	476, 632, 998
NdeII	GATC	2 cut(s)	397, 1222
NheI	GCTAGC	1 cut(s)	997
NlaIII	CATG	4 cut(s)	137, 325, 916, 946
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	1 cut(s)	916
PaeI	GCATGC	1 cut(s)	916
PaqCI	CACCTGC	1 cut(s)	661
PceI	AGGCCT	1 cut(s)	161
PctI	GAATGC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	1267, 1381
PflMI	CCANNNNNTGG	1 cut(s)	1087
PfoI	TCCNGGA	1 cut(s)	811
PkrI	GCNGC	6 cut(s)	469, 481, 1003, 1030, 1278, 1311
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PsiI	TTATAA	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	742
Psp6I	CCWGG	4 cut(s)	232, 811, 828, 1363
PspGI	CCWGG	4 cut(s)	232, 811, 828, 1363
PspPI	GGNCC	2 cut(s)	904, 1282
PstI	CTGCAG	2 cut(s)	472, 484
PsuI	RGATCY	1 cut(s)	1222
PvuII	CAGCTG	1 cut(s)	1279
RsaI	GTAC	3 cut(s)	382, 711, 1177
RsaNI	GTAC	3 cut(s)	381, 710, 1176
RseI	CAYNNNNRTG	2 cut(s)	221, 724
SacI	GAGCTC	1 cut(s)	742
SaqAI	TTAA	6 cut(s)	42, 258, 840, 975, 1097, 1397
SatI	GCNGC	6 cut(s)	468, 480, 1002, 1029, 1277, 1310
Sau3AI	GATC	2 cut(s)	397, 1222
Sau96I	GGNCC	2 cut(s)	904, 1282
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	4 cut(s)	234, 813, 830, 1365
SduI	GDGCHC	2 cut(s)	420, 742
SfaNI	GCATC	3 cut(s)	322, 336, 979
SfcI	CTRYAG	2 cut(s)	468, 480
SinI	GGWCC	1 cut(s)	1282
SmiMI	CAYNNNNRTG	2 cut(s)	221, 724
SmlI	CTYRAG	2 cut(s)	296, 425
SmoI	CTYRAG	2 cut(s)	296, 425
SpeI	ACTAGT	1 cut(s)	203
SphI	GCATGC	1 cut(s)	916
Sse9I	AATT	9 cut(s)	181, 576, 584, 616, 648, 660, 705, 956, 1394
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	2 cut(s)	410, 1227
SspMI	CTAG	3 cut(s)	204, 998, 1163
SstI	GAGCTC	1 cut(s)	742
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	4 cut(s)	232, 811, 828, 1363
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	591, 751, 1180
TaqI	TCGA	6 cut(s)	98, 126, 571, 665, 886, 1346
TasI	AATT	9 cut(s)	181, 576, 584, 616, 648, 660, 705, 956, 1394
TatI	WGTACW	2 cut(s)	380, 709
TfiI	GAWTC	2 cut(s)	1267, 1381
Tru1I	TTAA	6 cut(s)	42, 258, 840, 975, 1097, 1397
Tru9I	TTAA	6 cut(s)	42, 258, 840, 975, 1097, 1397
TscAI	CASTG	1 cut(s)	642
TseI	GCWGC	6 cut(s)	467, 479, 1001, 1028, 1276, 1309
TspRI	CASTG	1 cut(s)	642
Van91I	CCANNNNNTGG	1 cut(s)	1087
VpaK11BI	GGWCC	1 cut(s)	1282
XagI	CCTNNNNNAGG	1 cut(s)	827
XapI	RAATTY	3 cut(s)	616, 660, 956
XceI	RCATGY	1 cut(s)	916
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1292
XspI	CTAG	3 cut(s)	204, 998, 1163
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.