Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Reverse (-)

18704805 .. 18706657

Gene Structure 1853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCCGCCGTAAATGGATATCAGGGAAATACTCCGGCAGATCCTCCGGCGTCTAATGGATCAAAACAACCTGCGGCTCCGACCAAGACTGTTGACAGCCAATCTGTTCTCAAAAGACTGCAATCTGAATTGATGGGCTTGATGATGGGCGGTGGTCCAGGAATATCGGCTTTCCCTGAGGAAGACAACATATTCTGCTGGAAAGGGACAATAACAGGAAGCAAAGATACTGTGTTTGAAGGAACTGAGTACAGACTCTCACTCTCTTTCTCCAATGACTATCCTTTCAAGCCTCCAAAGGTTAAGTTTGAGACATGTTGCTTCCACCCCAATGTTGATGTCTATGGCAATATCTGCTTAGACATTCTTCAGGATAAGTGGTCATCTGCTTACGATGTGAGGACGATACTACTATCGATTCAGAGCCTCCTGGGAGAACCGAACATCAGTTCACCATTGAACACTCAAGCAGCTCAGCTTTGGAGTAACCAAGAAGAGTACAGGAAGATGGTTGAGAAGCTTTACAAGCCTCCAAGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

180

Amino Acids

19.79

Weight (kDa)

5.19

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	39 - 173	1.1e-46	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
AciI	CCGC	3 cut(s)	6, 74, 150
AclWI	GGATC	2 cut(s)	35, 67
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	2 cut(s)	251, 500
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	239, 289, 460
AjnI	CCWGG	2 cut(s)	157, 429
AluBI	AGCT	3 cut(s)	473, 478, 520
AluI	AGCT	3 cut(s)	473, 478, 520
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	2 cut(s)	35, 67
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	177
BarI	GAAGNNNNNNTAC	2 cut(s)	211, 243
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	3 cut(s)	127, 139, 502
BciT130I	CCWGG	2 cut(s)	159, 431
BcoDI	GTCTC	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	3 cut(s)	6, 75, 471
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	3 cut(s)	7, 76, 472
Bme1390I	CCNGG	2 cut(s)	159, 431
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	159, 431
BpiI	GAAGAC	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	450
Bsa29I	ATCGAT	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	430
Bse21I	CCTNAGG	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	159, 431
BseCI	ATCGAT	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	430
BseMII	CTCAG	3 cut(s)	168, 237, 488
BseXI	GCAGC	1 cut(s)	482
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	35, 47
BslFI	GGGAC	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	40, 59
Bsp1720I	GCTNAGC	1 cut(s)	474
BspACI	CCGC	3 cut(s)	6, 74, 150
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	169, 238, 487
BspDI	ATCGAT	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	2 cut(s)	35, 67
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	2 cut(s)	40, 59
BssNI	GRCGYC	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	159, 431
Bst4CI	ACNGT	2 cut(s)	91, 232
Bst6I	CTCTTC	1 cut(s)	489
BstACI	GRCGYC	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstDEI	CTNAG	4 cut(s)	177, 246, 358, 474
BstKTI	GATC	2 cut(s)	43, 62
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	40, 59
BstMWI	GCNNNNNNNGC	2 cut(s)	354, 526
BstNI	CCWGG	2 cut(s)	159, 431
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	157, 429
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
Bsu15I	ATCGAT	1 cut(s)	416
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	416
BveI	ACCTGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	155
ClaI	ATCGAT	1 cut(s)	416
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	250, 499
CviAII	CATG	2 cut(s)	315, 540
CviQI	GTAC	2 cut(s)	250, 499
DdeI	CTNAG	4 cut(s)	177, 246, 358, 474
DpnI	GATC	2 cut(s)	42, 61
DpnII	GATC	2 cut(s)	40, 59
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco32I	GATATC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	353
Eco81I	CCTNAGG	1 cut(s)	177
EcoRII	CCWGG	2 cut(s)	157, 429
EcoRV	GATATC	1 cut(s)	20
FaeI	CATG	2 cut(s)	318, 543
FaiI	YATR	4 cut(s)	191, 316, 345, 541
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	314, 539
Fnu4HI	GCNGC	3 cut(s)	6, 75, 471
Fsp4HI	GCNGC	3 cut(s)	6, 75, 471
GluI	GCNGC	3 cut(s)	6, 75, 471
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	35, 47
HgaI	GACGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	318, 543
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	2 cut(s)	255, 418
HpaII	CCGG	2 cut(s)	35, 47
HphI	GGTGA	1 cut(s)	444
Hpy166II	GTNNAC	2 cut(s)	94, 452
Hpy188I	TCNGA	3 cut(s)	81, 127, 423
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	2 cut(s)	94, 452
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	2 cut(s)	91, 232
HpyCH4V	TGCA	2 cut(s)	121, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	354, 526
HpyF3I	CTNAG	4 cut(s)	177, 246, 358, 474
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	318, 543
Kzo9I	GATC	2 cut(s)	40, 59
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	482
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	2 cut(s)	42, 61
MboI	GATC	2 cut(s)	40, 59
MboII	GAAGA	4 cut(s)	194, 359, 506, 517
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	6 cut(s)	54, 172, 303, 393, 437, 540
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	330
MspI	CCGG	2 cut(s)	35, 47
MspR9I	CCNGG	2 cut(s)	159, 431
MvaI	CCWGG	2 cut(s)	159, 431
MwoI	GCNNNNNNNGC	2 cut(s)	354, 526
NdeII	GATC	2 cut(s)	40, 59
NlaIII	CATG	2 cut(s)	318, 543
NlaIV	GGNNCC	1 cut(s)	78
NspI	RCATGY	1 cut(s)	318
PciI	ACATGT	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	418
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	7, 76, 472
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PscI	ACATGT	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	157, 429
PspGI	CCWGG	2 cut(s)	157, 429
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	2 cut(s)	251, 500
RsaNI	GTAC	2 cut(s)	250, 499
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	3 cut(s)	6, 75, 471
Sau3AI	GATC	2 cut(s)	40, 59
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	2 cut(s)	159, 431
SetI	ASST	5 cut(s)	73, 303, 475, 480, 522
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	3 cut(s)	6, 74, 150
StyD4I	CCNGG	2 cut(s)	157, 429
TaaI	ACNGT	2 cut(s)	91, 232
TaqI	TCGA	1 cut(s)	416
TasI	AATT	1 cut(s)	128
TatI	WGTACW	2 cut(s)	249, 498
TauI	GCSGC	2 cut(s)	8, 77
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseI	GCWGC	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	155
XceI	RCATGY	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.