Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Forward (+)

53400236 .. 53401753

Gene Structure 1518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG348800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGTTAATGATGGGTGGAGATTCGGGGATATCCGCGTTCCCTGAAGAAGACAACATATTCTGCTGGAAAGGGACCATCAATGGAAGCAAAGAGACAGTTTTCGAAGGGACTCAATACAGATTGTCCCTTTCTTTCCCCAATGACTATCCCTTTAAGCCTCCCAAGGTCAAGTTCGAGTCTTTCTGTTTCCATCCCAATGTCGATGTCCGCGGCCACATTTGCTTGGATATTCTTCAGGATAAATGGTCTTCGGCTTATGATGTGAGAACCATCCTCTTATCGATCCAGAGTCTTCTAGGAGAACCAAACACAAGCTCACCTTTGAACCCCCAAGCAGCACAACTGTGGAGCAATCAAGAAGGTAAATCTTGGTTCTCCTTTTACTACTTCATTTGTTTTAGTTTTCAAATAGTTTTACAGGATAAACAGTGTCTGAATAATGCTGTGTCTCTCTATGTCTCTTGCAGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

158

Amino Acids

17.99

Weight (kDa)

5.28

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	8 - 121	4e-44	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	38, 213
AciI	CCGC	3 cut(s)	36, 211, 213
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	1 cut(s)	214
AcuI	CTGAAG	2 cut(s)	66, 221
AgsI	TTSAA	2 cut(s)	328, 410
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AleI	CACNNNNGTG	1 cut(s)	346
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw26I	GTCTC	3 cut(s)	89, 456, 466
AlwI	GGATC	1 cut(s)	280
AlwNI	CAGNNNCTG	1 cut(s)	436
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	312
AsuII	TTCGAA	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	75
BbsI	GAAGAC	3 cut(s)	57, 243, 287
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	4 cut(s)	7, 86, 201, 281
BcoDI	GTCTC	3 cut(s)	89, 456, 466
BfaI	CTAG	1 cut(s)	299
BisI	GCNGC	2 cut(s)	214, 339
BlsI	GCNGC	2 cut(s)	215, 340
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	76
BpiI	GAAGAC	3 cut(s)	57, 243, 287
Bpu14I	TTCGAA	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	165, 211
BseCI	ATCGAT	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	165, 211
BseGI	GGATG	2 cut(s)	193, 273
BseXI	GCAGC	1 cut(s)	350
Bsh1236I	CGCG	2 cut(s)	38, 213
BshFI	GGCC	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	284
BslFI	GGGAC	3 cut(s)	88, 112, 124
BsmAI	GTCTC	3 cut(s)	89, 456, 466
BsmFI	GGGAC	3 cut(s)	88, 112, 124
BsnI	GGCC	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	3 cut(s)	36, 211, 213
BspANI	GGCC	1 cut(s)	216
BspDI	ATCGAT	1 cut(s)	284
BspFNI	CGCG	2 cut(s)	38, 213
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	280
BspT104I	TTCGAA	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	165, 211
BssMI	GATC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	3 cut(s)	100, 348, 432
BstBI	TTCGAA	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	193, 273
BstFNI	CGCG	2 cut(s)	38, 213
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	3 cut(s)	89, 456, 466
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstUI	CGCG	2 cut(s)	38, 213
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	3 cut(s)	57, 243, 287
Bsu15I	ATCGAT	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	216
BsuTUI	ATCGAT	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	193, 273
BtsIMutI	CAGTG	1 cut(s)	437
CaiI	CAGNNNCTG	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	75
Cfr42I	CCGCGG	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	284
CviJI	RGCY	4 cut(s)	160, 216, 257, 318
CviKI_1	RGCY	4 cut(s)	160, 216, 257, 318
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	66, 221
EcoRV	GATATC	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaiI	YATR	4 cut(s)	59, 261, 459, 475
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FaqI	GGGAC	3 cut(s)	88, 112, 124
Fnu4HI	GCNGC	2 cut(s)	214, 339
FokI	GGATG	2 cut(s)	180, 260
Fsp4HI	GCNGC	2 cut(s)	214, 339
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	2 cut(s)	214, 339
HaeIII	GGCC	1 cut(s)	216
HinfI	GANTC	4 cut(s)	23, 112, 179, 292
HphI	GGTGA	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	3 cut(s)	239, 289, 359
HpyAV	CCTTC	2 cut(s)	101, 356
HpyCH4III	ACNGT	3 cut(s)	100, 348, 432
HpyCH4V	TGCA	1 cut(s)	468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
KspI	CCGCGG	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	351
LpnPI	CCDG	5 cut(s)	52, 57, 224, 302, 407
Lsp1109I	GCAGC	1 cut(s)	350
MaeI	CTAG	1 cut(s)	299
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	5 cut(s)	59, 62, 227, 243, 287
MlyI	GAGTC	3 cut(s)	106, 188, 301
MnlI	CCTC	2 cut(s)	171, 287
MseI	TTAA	2 cut(s)	8, 156
MslI	CAYNNNNRTG	2 cut(s)	198, 346
MspA1I	CMGCKG	1 cut(s)	213
MvnI	CGCG	2 cut(s)	38, 213
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	1 cut(s)	285
NlaIV	GGNNCC	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	105
OliI	CACNNNNGTG	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	215, 340
PleI	GAGTC	3 cut(s)	106, 187, 300
PpsI	GAGTC	3 cut(s)	106, 187, 300
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	436
RseI	CAYNNNNRTG	2 cut(s)	198, 346
SacII	CCGCGG	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	8, 156
SatI	GCNGC	2 cut(s)	214, 339
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	3 cut(s)	106, 188, 301
SetI	ASST	4 cut(s)	171, 320, 325, 367
Sfr303I	CCGCGG	1 cut(s)	214
SfuI	TTCGAA	1 cut(s)	105
SgrBI	CCGCGG	1 cut(s)	214
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	198, 346
SsiI	CCGC	3 cut(s)	36, 211, 213
SspMI	CTAG	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	3 cut(s)	100, 348, 432
TaqI	TCGA	4 cut(s)	105, 177, 204, 284
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	8, 156
Tru9I	TTAA	2 cut(s)	8, 156
TscAI	CASTG	1 cut(s)	437
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	75
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.