Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Forward (+)

5140373 .. 5142422

Gene Structure 2050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCCTCTAGAACGGTCAATGACTTAATCGCAGGGAGAGAAAAGTCAATATTCACCGGTGGTGCTCCCGCAGACCCATCGACGAAAACCACCCATGACGACTGTTACCGTGTTCACACTAATCGAGGGGCCACAGTTGCTGCTTCTTTCTCAAACCAATCTCCGCCTCCGGAAAATTCCACAATCAAAAGGCTACAATCTGAATTGAAGGACTTAATGATGAGTGACTGTGACTCTGGGATATCAGCCTTTCCTGAAAAGGACAATATAATGTGCTGGAAAGGGAGAATTAGTGGAGGCAAAGGTTCAGTGTTTGAAGGAAAAGAGTACAGACTATCCCTTAGCTTTCCGAATGATTATCCGTTCAAACCGCCTTGCATCAACTTCGATTATCCTATCCCTTTTCACCCCAATGTGGATGCCTATGGAAAAATCTACTTGGATATTCTTCTACTGGAAGAATTCGATAAATGGTCATCTGCTTATGATGTGAGAACCGTGCTCTTATCCATCAAGAGTCTACTTGAAGATCCAAACCTAAGCACACCTGTCAACTGCGATGCAGCAAGACTTTGGAGTAATCAGAAAGAATATAAGGAGATGGTGGAGAAATTATACAAGCATCCCCAATATGGATTAGAGGAGAGAACTATTAATCGATTTGGAGGGCAATTATGCGGTTTGCGAGAGGATAGTAAGGTGCTTTCTGAATGTTTAAGGCGGCATTCTTCCTTTATAAAAAGAAAAGTTTCAAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

253

Amino Acids

28.66

Weight (kDa)

8.08

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	64 - 204	3.5e-38	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	737
AccI	GTMKAC	1 cut(s)	520
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	5 cut(s)	69, 164, 371, 678, 721
AclWI	GGATC	1 cut(s)	524
AcsI	RAATTY	2 cut(s)	175, 461
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	415, 632
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	5 cut(s)	208, 317, 367, 527, 753
AluBI	AGCT	1 cut(s)	345
AluI	AGCT	1 cut(s)	345
Alw21I	GWGCWC	2 cut(s)	67, 504
AlwI	GGATC	1 cut(s)	524
AlwNI	CAGNNNCTG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	140, 563
ApoI	RAATTY	2 cut(s)	175, 461
AseI	ATTAAT	1 cut(s)	654
AsiGI	ACCGGT	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	748
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	46, 398
Bbv12I	GWGCWC	2 cut(s)	67, 504
BbvI	GCAGC	2 cut(s)	127, 575
BccI	CCATC	3 cut(s)	85, 518, 595
BcgI	CGANNNNNNTGC	4 cut(s)	60, 94, 367, 401
BfaI	CTAG	1 cut(s)	9
BisI	GCNGC	3 cut(s)	141, 564, 722
BlsI	GCNGC	3 cut(s)	142, 565, 723
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	130
BmsI	GCATC	4 cut(s)	387, 409, 550, 631
Bpu10I	CCTNAGC	2 cut(s)	341, 539
Bsa29I	ATCGAT	1 cut(s)	658
BsaWI	WCCGGW	2 cut(s)	56, 169
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 632
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	459
BseAI	TCCGGA	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	658
BseGI	GGATG	2 cut(s)	424, 622
BseLI	CCNNNNNNNGG	2 cut(s)	415, 632
BseNI	ACTGG	1 cut(s)	459
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	2 cut(s)	127, 575
BshFI	GGCC	1 cut(s)	131
BshTI	ACCGGT	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	658
BsiHKAI	GWGCWC	2 cut(s)	67, 504
BsiSI	CCGG	2 cut(s)	57, 170
BslI	CCNNNNNNNGG	2 cut(s)	415, 632
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	67, 504
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	529
BspACI	CCGC	5 cut(s)	69, 164, 371, 678, 721
BspANI	GGCC	1 cut(s)	131
BspDI	ATCGAT	1 cut(s)	658
BspEI	TCCGGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	524
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	459
BssAI	RCCGGY	1 cut(s)	56
BssMI	GATC	1 cut(s)	529
Bst4CI	ACNGT	6 cut(s)	16, 104, 110, 136, 230, 499
BstDEI	CTNAG	2 cut(s)	341, 539
BstF5I	GGATG	2 cut(s)	424, 622
BstKTI	GATC	1 cut(s)	532
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	127, 575
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
Bsu15I	ATCGAT	1 cut(s)	658
BsuRI	GGCC	1 cut(s)	131
BsuTUI	ATCGAT	1 cut(s)	658
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	424, 622
BtsIMutI	CAGTG	1 cut(s)	315
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	658
Csp6I	GTAC	1 cut(s)	328
CspAI	ACCGGT	1 cut(s)	56
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	4 cut(s)	131, 193, 248, 345
CviKI_1	RGCY	4 cut(s)	131, 193, 248, 345
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	341, 539
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
EciI	GGCGGA	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	461
EcoRV	GATATC	1 cut(s)	243
FaeI	CATG	1 cut(s)	98
FaiI	YATR	9 cut(s)	96, 269, 426, 486, 594, 616, 633, 676, 737
FatI	CATG	1 cut(s)	94
FauI	CCCGC	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	520
Fnu4HI	GCNGC	3 cut(s)	141, 564, 722
FokI	GGATG	2 cut(s)	431, 609
Fsp4HI	GCNGC	3 cut(s)	141, 564, 722
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	3 cut(s)	141, 564, 722
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	2 cut(s)	57, 170
Hin1II	CATG	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	2 cut(s)	233, 517
HpaII	CCGG	2 cut(s)	57, 170
HphI	GGTGA	2 cut(s)	46, 398
Hpy166II	GTNNAC	3 cut(s)	115, 521, 553
Hpy188I	TCNGA	4 cut(s)	202, 351, 585, 709
Hpy188III	TCNNGA	4 cut(s)	9, 170, 254, 514
Hpy8I	GTNNAC	3 cut(s)	115, 521, 553
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	202, 311
HpyCH4III	ACNGT	6 cut(s)	16, 104, 110, 136, 230, 499
HpyCH4V	TGCA	2 cut(s)	378, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	341, 539
Hsp92II	CATG	1 cut(s)	98
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	529
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	8 cut(s)	18, 70, 183, 222, 262, 267, 440, 561
Lsp1109I	GCAGC	2 cut(s)	127, 575
LweI	GCATC	4 cut(s)	387, 409, 550, 631
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	3 cut(s)	104, 224, 230
MalI	GATC	1 cut(s)	531
MboI	GATC	1 cut(s)	529
MboII	GAAGA	4 cut(s)	440, 470, 539, 720
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	2 cut(s)	67, 504
MluCI	AATT	6 cut(s)	175, 203, 288, 461, 611, 671
MlyI	GAGTC	2 cut(s)	227, 526
MnlI	CCTC	7 cut(s)	16, 119, 177, 290, 634, 659, 682
MroI	TCCGGA	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	4 cut(s)	26, 215, 654, 716
MslI	CAYNNNNRTG	1 cut(s)	411
MspI	CCGG	2 cut(s)	57, 170
Mva1269I	GAATGC	1 cut(s)	724
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	1 cut(s)	529
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	2 cut(s)	224, 230
PctI	GAATGC	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	748
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	142, 565, 723
PleI	GAGTC	2 cut(s)	227, 525
PpsI	GAGTC	2 cut(s)	227, 525
PshBI	ATTAAT	1 cut(s)	654
PsiI	TTATAA	1 cut(s)	737
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	26, 215, 654, 716
SatI	GCNGC	3 cut(s)	141, 564, 722
Sau3AI	GATC	1 cut(s)	529
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	2 cut(s)	227, 526
SduI	GDGCHC	2 cut(s)	67, 504
SetI	ASST	5 cut(s)	307, 347, 540, 550, 702
SfaNI	GCATC	4 cut(s)	387, 409, 550, 631
SgrAI	CRCCGGYG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	411
Sse9I	AATT	6 cut(s)	175, 203, 288, 461, 611, 671
SsiI	CCGC	5 cut(s)	69, 164, 371, 678, 721
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	1 cut(s)	9
TaaI	ACNGT	6 cut(s)	16, 104, 110, 136, 230, 499
TaqI	TCGA	5 cut(s)	80, 124, 387, 465, 658
TasI	AATT	6 cut(s)	175, 203, 288, 461, 611, 671
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	724
Tru1I	TTAA	4 cut(s)	26, 215, 654, 716
Tru9I	TTAA	4 cut(s)	26, 215, 654, 716
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	2 cut(s)	224, 230
TseI	GCWGC	2 cut(s)	140, 563
Tsp45I	GTSAC	2 cut(s)	224, 230
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	315
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	2 cut(s)	175, 461
XbaI	TCTAGA	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	520
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.