Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Forward (+)

20781022 .. 20782681

Gene Structure 1660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCGTCGGGACTCCCCTACTCCGCCGCACCTGAGTGGTTGCGGGCGAAAACCACGGCTGTCGACTGCCAACGTGCTAGGGAACGGACAAGAATCACCACCGTTAACCGTAATCATCGAATTCCGACCTCCACAAACGGCGACGACTGCCCGGATGTCGATGACGACTGCTGCCGTCTTCCCACTGATCGAATCCCGACCTCCCCAAACCAATCTCCGGAAAATTGCGCAATCAAAAGGCTTCAATTGGAATTGAAGGATTTTATGATGGGTGAGTGTGACACTGGGATATCAGCCTTTCCTGAAAAGGACACTACTATGATGTTGTGGAAAGGGAGCATCACTGGAGGCAAAGGTTCAGTCTTTGAAGGAAAACAGTACACACTCTACCTTCATTTTCCCAGTGATTATCCCTTTAAGCCGCCCGTCGTCAGATTCGACAGACCTGCTCCTTTTCACCCCAATGTGGGGGGTTACTGTTATCGGTGCTATGGCAGAATCAAGTTGGATATTCTTCTACAGGAATGGTCATCTGCTTATGATGTGAGAACCGTGCTCTTATCCATCAAGACTATGCTTGAAGATCCAAACCTAAGCGCGCCTGTCAACCGCGATGCAGCTAGACTTTGGAGTGATCAGAAAGAATATAGGAAGATGGTGGAGAAGTTATACAATTCTCCCCAATATGGATTAGAGAAGAGATTTATTGATCTATATGAAGTGAAATTATGCGGTTCGGGAGAAGATAGCAAGGCGGGTTCCAAAGGTGACCTTAGGCAGCGTTCTTCCTACATAAAGAGGGTAAGGCAGGTTCCAATAGTGAACTTAGGCGGCATTCTTCCTTCAGACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

285

Amino Acids

32.24

Weight (kDa)

8.76

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	80 - 222	8.7e-34	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	229
Acc36I	ACCTGC	2 cut(s)	454, 799
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	2 cut(s)	599, 612
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	8 cut(s)	24, 27, 43, 422, 610, 732, 755, 831
AclWI	GGATC	1 cut(s)	578
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	828
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	5 cut(s)	217, 466, 467, 468, 686
AgsI	TTSAA	4 cut(s)	245, 256, 368, 581
AleI	CACNNNNGTG	1 cut(s)	34
AluBI	AGCT	1 cut(s)	620
AluI	AGCT	1 cut(s)	620
Alw21I	GWGCWC	1 cut(s)	558
AlwI	GGATC	1 cut(s)	578
Aor13HI	TCCGGA	1 cut(s)	217
ApeKI	GCWGC	3 cut(s)	171, 617, 778
ApoI	RAATTY	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
AspLEI	GCGC	3 cut(s)	230, 599, 601
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	4 cut(s)	88, 284, 449, 779
AxyI	CCTNAGG	1 cut(s)	773
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	3 cut(s)	158, 629, 790
BccI	CCATC	3 cut(s)	262, 572, 649
BceAI	ACGGC	3 cut(s)	72, 154, 159
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	152
BfaI	CTAG	2 cut(s)	78, 621
BfmI	CTRYAG	1 cut(s)	518
BfuAI	ACCTGC	2 cut(s)	454, 799
BisI	GCNGC	6 cut(s)	27, 172, 422, 618, 779, 832
BlsI	GCNGC	6 cut(s)	28, 173, 423, 619, 780, 833
Bme1390I	CCNGG	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	760, 813
BmrFI	CCNGG	1 cut(s)	152
BmrI	ACTGGG	2 cut(s)	294, 396
BmsI	GCATC	2 cut(s)	348, 604
BmuI	ACTGGG	2 cut(s)	294, 396
BpiI	GAAGAC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	5 cut(s)	217, 466, 467, 468, 686
Bse1I	ACTGG	3 cut(s)	289, 349, 402
Bse21I	CCTNAGG	1 cut(s)	773
BseAI	TCCGGA	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	5 cut(s)	217, 466, 467, 468, 686
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	3 cut(s)	289, 349, 402
BsePI	GCGCGC	1 cut(s)	597
BseXI	GCAGC	3 cut(s)	158, 629, 790
Bsh1236I	CGCG	2 cut(s)	599, 612
BsiHKAI	GWGCWC	1 cut(s)	558
BsiSI	CCGG	2 cut(s)	152, 218
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	5 cut(s)	217, 466, 467, 468, 686
BsmFI	GGGAC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	834
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	4 cut(s)	187, 583, 634, 709
BspACI	CCGC	8 cut(s)	24, 27, 43, 422, 610, 732, 755, 831
BspCNI	CTCAG	1 cut(s)	25
BspEI	TCCGGA	1 cut(s)	217
BspFNI	CGCG	2 cut(s)	599, 612
BspLI	GGNNCC	2 cut(s)	760, 813
BspMI	ACCTGC	2 cut(s)	454, 799
BspPI	GGATC	1 cut(s)	578
BsrI	ACTGG	3 cut(s)	289, 349, 402
BssECI	CCNNGG	1 cut(s)	54
BssHII	GCGCGC	1 cut(s)	597
BssMI	GATC	4 cut(s)	187, 583, 634, 709
Bst4CI	ACNGT	5 cut(s)	103, 110, 378, 479, 553
Bst6I	CTCTTC	1 cut(s)	692
BstC8I	GCNNGC	2 cut(s)	45, 599
BstDEI	CTNAG	4 cut(s)	33, 593, 773, 826
BstDSI	CCRYGG	1 cut(s)	54
BstEII	GGTNACC	1 cut(s)	767
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	2 cut(s)	599, 612
BstHHI	GCGC	3 cut(s)	230, 599, 601
BstKTI	GATC	4 cut(s)	190, 586, 637, 712
BstMBI	GATC	4 cut(s)	187, 583, 634, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstPI	GGTNACC	1 cut(s)	767
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	518
BstUI	CGCG	2 cut(s)	599, 612
BstV1I	GCAGC	3 cut(s)	158, 629, 790
BstV2I	GAAGAC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
Bsu36I	CCTNAGG	1 cut(s)	773
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	4 cut(s)	183, 282, 342, 409
BveI	ACCTGC	2 cut(s)	454, 799
Cac8I	GCNNGC	2 cut(s)	45, 599
CfoI	GCGC	3 cut(s)	230, 599, 601
Csp6I	GTAC	1 cut(s)	379
CviJI	RGCY	5 cut(s)	59, 241, 296, 421, 620
CviKI_1	RGCY	5 cut(s)	59, 241, 296, 421, 620
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	4 cut(s)	33, 593, 773, 826
DpnI	GATC	4 cut(s)	189, 585, 636, 711
DpnII	GATC	4 cut(s)	187, 583, 634, 709
Eam1104I	CTCTTC	1 cut(s)	692
EarI	CTCTTC	1 cut(s)	692
EciI	GGCGGA	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	828
Eco81I	CCTNAGG	1 cut(s)	773
Eco91I	GGTNACC	1 cut(s)	767
EcoO65I	GGTNACC	1 cut(s)	767
EcoRI	GAATTC	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	291
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FaqI	GGGAC	1 cut(s)	24
FauI	CCCGC	2 cut(s)	36, 748
FbaI	TGATCA	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	6 cut(s)	27, 172, 422, 618, 779, 832
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	6 cut(s)	27, 172, 422, 618, 779, 832
FspBI	CTAG	2 cut(s)	78, 621
FspI	TGCGCA	1 cut(s)	229
GlaI	GCGC	3 cut(s)	229, 598, 600
GluI	GCNGC	6 cut(s)	27, 172, 422, 618, 779, 832
GsuI	CTGGAG	1 cut(s)	366
HapII	CCGG	2 cut(s)	152, 218
HhaI	GCGC	3 cut(s)	230, 599, 601
Hin6I	GCGC	3 cut(s)	228, 597, 599
HinP1I	GCGC	3 cut(s)	228, 597, 599
HincII	GTYRAC	3 cut(s)	64, 106, 607
HindII	GTYRAC	3 cut(s)	64, 106, 607
HinfI	GANTC	5 cut(s)	12, 93, 192, 435, 498
HpaI	GTTAAC	1 cut(s)	106
HpaII	CCGG	2 cut(s)	152, 218
HphI	GGTGA	4 cut(s)	88, 284, 449, 779
Hpy166II	GTNNAC	5 cut(s)	64, 106, 381, 607, 823
Hpy188I	TCNGA	4 cut(s)	126, 434, 639, 847
Hpy188III	TCNNGA	6 cut(s)	9, 196, 218, 302, 568, 738
Hpy8I	GTNNAC	5 cut(s)	64, 106, 381, 607, 823
Hpy99I	CGWCG	3 cut(s)	10, 146, 431
HpyAV	CCTTC	4 cut(s)	250, 362, 401, 852
HpyCH4III	ACNGT	5 cut(s)	103, 110, 378, 479, 553
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	4 cut(s)	33, 593, 773, 826
HpySE526I	ACGT	1 cut(s)	73
HspAI	GCGC	3 cut(s)	228, 597, 599
Kpn2I	TCCGGA	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	634
KspAI	GTTAAC	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	187, 583, 634, 709
LmnI	GCTCC	2 cut(s)	336, 454
Lsp1109I	GCAGC	3 cut(s)	158, 629, 790
LweI	GCATC	2 cut(s)	348, 604
MaeI	CTAG	2 cut(s)	78, 621
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	3 cut(s)	278, 473, 767
MalI	GATC	4 cut(s)	189, 585, 636, 711
MboI	GATC	4 cut(s)	187, 583, 634, 709
MboII	GAAGA	8 cut(s)	170, 506, 593, 664, 709, 755, 777, 830
MfeI	CAATTG	1 cut(s)	245
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	6 cut(s)	120, 223, 245, 251, 673, 725
MlyI	GAGTC	1 cut(s)	6
MmeI	TCCRAC	2 cut(s)	149, 486
MnlI	CCTC	4 cut(s)	139, 211, 341, 792
MroI	TCCGGA	1 cut(s)	217
MseI	TTAA	2 cut(s)	105, 417
MslI	CAYNNNNRTG	3 cut(s)	34, 317, 462
MspI	CCGG	2 cut(s)	152, 218
MspR9I	CCNGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	834
MvnI	CGCG	2 cut(s)	599, 612
MwoI	GCNNNNNNNGC	1 cut(s)	147
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	187, 583, 634, 709
NlaIV	GGNNCC	2 cut(s)	760, 813
NmuCI	GTSAC	2 cut(s)	278, 767
NsbI	TGCGCA	1 cut(s)	229
OliI	CACNNNNGTG	1 cut(s)	34
PauI	GCGCGC	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PctI	GAATGC	1 cut(s)	834
PfeI	GAWTC	4 cut(s)	93, 192, 435, 498
PkrI	GCNGC	6 cut(s)	28, 173, 423, 619, 780, 833
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
PspEI	GGTNACC	1 cut(s)	767
PspN4I	GGNNCC	2 cut(s)	760, 813
PsrI	GAACNNNNNNTAC	2 cut(s)	795, 827
PsuI	RGATCY	1 cut(s)	583
PteI	GCGCGC	1 cut(s)	597
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	3 cut(s)	34, 317, 462
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	105, 417
SatI	GCNGC	6 cut(s)	27, 172, 422, 618, 779, 832
Sau3AI	GATC	4 cut(s)	187, 583, 634, 709
SchI	GAGTC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	2 cut(s)	348, 604
SfcI	CTRYAG	1 cut(s)	518
SmiMI	CAYNNNNRTG	3 cut(s)	34, 317, 462
Sse9I	AATT	6 cut(s)	120, 223, 245, 251, 673, 725
SsiI	CCGC	8 cut(s)	24, 27, 43, 422, 610, 732, 755, 831
SspMI	CTAG	2 cut(s)	78, 621
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	5 cut(s)	103, 110, 378, 479, 553
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	5 cut(s)	63, 118, 159, 190, 438
TasI	AATT	6 cut(s)	120, 223, 245, 251, 673, 725
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	3 cut(s)	29, 424, 834
TfiI	GAWTC	4 cut(s)	93, 192, 435, 498
Tru1I	TTAA	2 cut(s)	105, 417
Tru9I	TTAA	2 cut(s)	105, 417
TscAI	CASTG	4 cut(s)	190, 289, 349, 409
TseFI	GTSAC	2 cut(s)	278, 767
TseI	GCWGC	3 cut(s)	171, 617, 778
Tsp45I	GTSAC	2 cut(s)	278, 767
TspDTI	ATGAA	2 cut(s)	383, 732
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	4 cut(s)	190, 289, 349, 409
XapI	RAATTY	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	2 cut(s)	78, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.