Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Forward (+)

21300037 .. 21301898

Gene Structure 1862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGTCTGTGAACCACCAGGACAACATCCCAGGCGCCACTGGCACCGGCGCGTCCAAGAAATCTCAGGCGCCGGCGAAAACCGCCGATTCCCAATCCGTTCTCAAAAGGCTTCAATCCGAGTTGATGGCTCTAATGATGGGTGGAGATTCGGGGATATCTGCGTTTCCTGAGGAAGACAACATATTCTGCTGGAAAGGGACCATCAATGGAAGCAAAGACACGGTTTTCGAAGGGACTCAATACAGATTGTTGCTCTCTTTCCCCAATGACTATCCCTTTAAGCCTCCCAAGGTCAAGTTCGAGACTTTCTGCTTTCATCCCAATGTCGATGTTCGCGGCCATATTTGCTTGGACATTCTTCAGGATAAATGGTCTTCGGCTTATGATGTCAGAACCATCCTCTTATCGATCCAGAGTCTTCTCGGAGAACCAAACACAAGCTCACCTTTGAACCCCCATGCAGCGCAACTTTGGAGCAATCAAGAAGAATATAGGAAGATGGTGGAGAAATTGTACAAGGCTCCAAACGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

179

Amino Acids

19.75

Weight (kDa)

6.41

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	37 - 171	1.2e-47	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	35, 44, 70
AccII	CGCG	2 cut(s)	53, 339
AciI	CCGC	2 cut(s)	84, 339
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	347
AcyI	GRCGYC	3 cut(s)	5, 36, 71
AfaI	GTAC	1 cut(s)	518
AgsI	TTSAA	2 cut(s)	116, 454
AjnI	CCWGG	2 cut(s)	18, 31
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	1 cut(s)	444
AluI	AGCT	1 cut(s)	444
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	406
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	464
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AspLEI	GCGC	4 cut(s)	38, 53, 73, 469
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	438
AsuII	TTCGAA	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	201
AxyI	CCTNAGG	1 cut(s)	171
BanI	GGYRCC	3 cut(s)	35, 44, 70
BbsI	GAAGAC	3 cut(s)	183, 369, 413
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	5 cut(s)	121, 133, 212, 407, 496
BciT130I	CCWGG	2 cut(s)	20, 33
BcoDI	GTCTC	1 cut(s)	299
BfoI	RGCGCY	2 cut(s)	39, 74
BisI	GCNGC	2 cut(s)	340, 465
BlsI	GCNGC	2 cut(s)	341, 466
Bme1390I	CCNGG	2 cut(s)	20, 33
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	5 cut(s)	37, 46, 72, 202, 525
BmrFI	CCNGG	2 cut(s)	20, 33
BpiI	GAAGAC	3 cut(s)	183, 369, 413
Bpu14I	TTCGAA	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	410
BsaHI	GRCGYC	3 cut(s)	5, 36, 71
BsaJI	CCNNGG	2 cut(s)	31, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bse118I	RCCGGY	2 cut(s)	47, 73
Bse1I	ACTGG	1 cut(s)	46
Bse21I	CCTNAGG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	20, 33
BseCI	ATCGAT	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	31, 291
BseGI	GGATG	3 cut(s)	27, 319, 399
BseMII	CTCAG	2 cut(s)	80, 162
BseNI	ACTGG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	476
Bsh1236I	CGCG	2 cut(s)	53, 339
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	3 cut(s)	35, 44, 70
BshVI	ATCGAT	1 cut(s)	410
BsiSI	CCGG	2 cut(s)	48, 74
BslFI	GGGAC	2 cut(s)	214, 250
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	2 cut(s)	214, 250
BsnI	GGCC	1 cut(s)	342
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	2 cut(s)	84, 339
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	2 cut(s)	79, 163
BspDI	ATCGAT	1 cut(s)	410
BspFNI	CGCG	2 cut(s)	53, 339
BspLI	GGNNCC	5 cut(s)	37, 46, 72, 202, 525
BspPI	GGATC	1 cut(s)	406
BspT104I	TTCGAA	1 cut(s)	231
BspT107I	GGYRCC	3 cut(s)	35, 44, 70
BsrFI	RCCGGY	2 cut(s)	47, 73
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	2 cut(s)	47, 73
BssECI	CCNNGG	2 cut(s)	31, 291
BssMI	GATC	1 cut(s)	411
BssNI	GRCGYC	3 cut(s)	5, 36, 71
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	20, 33
Bst4CI	ACNGT	1 cut(s)	226
BstACI	GRCGYC	3 cut(s)	5, 36, 71
BstAUI	TGTACA	1 cut(s)	516
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	66, 171
BstF5I	GGATG	3 cut(s)	27, 319, 399
BstFNI	CGCG	2 cut(s)	53, 339
BstH2I	RGCGCY	2 cut(s)	39, 74
BstHHI	GCGC	4 cut(s)	38, 53, 73, 469
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 83, 348, 530
BstNI	CCWGG	2 cut(s)	20, 33
BstSCI	CCNGG	2 cut(s)	18, 31
BstUI	CGCG	2 cut(s)	53, 339
BstV1I	GCAGC	1 cut(s)	476
BstV2I	GAAGAC	3 cut(s)	183, 369, 413
Bsu15I	ATCGAT	1 cut(s)	410
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	410
BtsCI	GGATG	3 cut(s)	27, 319, 399
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	75
CfoI	GCGC	4 cut(s)	38, 53, 73, 469
Cfr10I	RCCGGY	2 cut(s)	47, 73
Cfr13I	GGNCC	1 cut(s)	201
ClaI	ATCGAT	1 cut(s)	410
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	1 cut(s)	461
CviJI	RGCY	7 cut(s)	112, 131, 286, 342, 383, 444, 524
CviKI_1	RGCY	7 cut(s)	112, 131, 286, 342, 383, 444, 524
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	2 cut(s)	66, 171
DinI	GGCGCC	2 cut(s)	37, 72
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
EaeI	YGGCCR	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	18, 31
EcoRV	GATATC	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	291
EgeI	GGCGCC	2 cut(s)	37, 72
EheI	GGCGCC	2 cut(s)	37, 72
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	1 cut(s)	464
FaiI	YATR	5 cut(s)	185, 345, 387, 462, 495
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FaqI	GGGAC	2 cut(s)	214, 250
FatI	CATG	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	340, 465
FokI	GGATG	3 cut(s)	14, 306, 386
Fsp4HI	GCNGC	2 cut(s)	340, 465
GlaI	GCGC	4 cut(s)	37, 52, 72, 468
GluI	GCNGC	2 cut(s)	340, 465
HaeII	RGCGCY	2 cut(s)	39, 74
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	2 cut(s)	48, 74
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	4 cut(s)	38, 53, 73, 469
Hin1I	GRCGYC	3 cut(s)	5, 36, 71
Hin1II	CATG	1 cut(s)	464
Hin6I	GCGC	4 cut(s)	36, 51, 71, 467
HinP1I	GCGC	4 cut(s)	36, 51, 71, 467
HinfI	GANTC	4 cut(s)	89, 149, 238, 418
HpaII	CCGG	2 cut(s)	48, 74
HphI	GGTGA	1 cut(s)	438
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	121, 395, 428
Hpy188III	TCNNGA	5 cut(s)	170, 304, 365, 415, 485
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 83, 348, 530
HpyF3I	CTNAG	2 cut(s)	66, 171
Hsp92I	GRCGYC	3 cut(s)	5, 36, 71
Hsp92II	CATG	1 cut(s)	464
HspAI	GCGC	4 cut(s)	36, 51, 71, 467
KasI	GGCGCC	2 cut(s)	35, 70
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	477, 529
Lsp1109I	GCAGC	1 cut(s)	476
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	6 cut(s)	188, 353, 369, 413, 500, 511
MluCI	AATT	1 cut(s)	512
Mly113I	GGCGCC	2 cut(s)	36, 71
MlyI	GAGTC	2 cut(s)	232, 427
MnlI	CCTC	3 cut(s)	166, 297, 413
MreI	CGCCGGCG	1 cut(s)	73
MroNI	GCCGGC	1 cut(s)	73
MseI	TTAA	2 cut(s)	282, 535
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	2 cut(s)	48, 74
MspR9I	CCNGG	2 cut(s)	20, 33
MvaI	CCWGG	2 cut(s)	20, 33
MvnI	CGCG	2 cut(s)	53, 339
MwoI	GCNNNNNNNGC	4 cut(s)	42, 83, 348, 530
NaeI	GCCGGC	1 cut(s)	75
NarI	GGCGCC	2 cut(s)	36, 71
NdeII	GATC	1 cut(s)	411
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	464
NlaIV	GGNNCC	5 cut(s)	37, 46, 72, 202, 525
NspV	TTCGAA	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	89, 149
PkrI	GCNGC	2 cut(s)	341, 466
PleI	GAGTC	2 cut(s)	232, 426
PluTI	GGCGCC	2 cut(s)	39, 74
PpsI	GAGTC	2 cut(s)	232, 426
Psp6I	CCWGG	2 cut(s)	18, 31
PspGI	CCWGG	2 cut(s)	18, 31
PspN4I	GGNNCC	5 cut(s)	37, 46, 72, 202, 525
PspPI	GGNCC	1 cut(s)	201
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	282, 535
SatI	GCNGC	2 cut(s)	340, 465
Sau3AI	GATC	1 cut(s)	411
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	2 cut(s)	232, 427
ScrFI	CCNGG	2 cut(s)	20, 33
SetI	ASST	3 cut(s)	297, 446, 451
SfoI	GGCGCC	2 cut(s)	37, 72
SfuI	TTCGAA	1 cut(s)	231
SgrAI	CRCCGGYG	2 cut(s)	47, 73
SinI	GGWCC	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	1 cut(s)	512
SsiI	CCGC	2 cut(s)	84, 339
SspDI	GGCGCC	2 cut(s)	35, 70
StyD4I	CCNGG	2 cut(s)	18, 31
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	4 cut(s)	231, 303, 330, 410
TasI	AATT	1 cut(s)	512
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	89, 149
Tru1I	TTAA	2 cut(s)	282, 535
Tru9I	TTAA	2 cut(s)	282, 535
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.