Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Forward (+)

10501462 .. 10503667

Gene Structure 2206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12020.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTCTAATGATGGGTGGAGATTCGAGGATATCTGCTTTCCCTGAAGAAGACAACATATTCTGCTGGAAAGGGACCATCAATGGAAGCAAAGACACGGTTTTCGAAGGGACTCAATACAGATTGTTGCTCTCTTTCCCCAATGACTATCCCTTTAAGCCTCCACGGTCAAGTTTGAGACTTTCTGCTTTCATCCCAATGTCGAATGTTCGCGGCCATATTTGCTTGGGTATTCTTCAGGATAAATGGTCTTCGGCTTATGATGTGAGAACCATCCTCTTATCGATCCAGAGTCTTCTCGGAGAACCAAACACAAGCTCACCTTTGAACCCCCAAGCAGCGCAACTTTGGAGCAATCAAAATATAGGAAGATGGTGGAGAAATTGTACAAGGCTCCAAACGCTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

137

Amino Acids

15.41

Weight (kDa)

8.96

Isoelectric Point (pI)

66.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 129	2.7e-35	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	213
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	1 cut(s)	214
AcuI	CTGAAG	2 cut(s)	66, 221
AfaI	GTAC	1 cut(s)	388
AgsI	TTSAA	1 cut(s)	328
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	280
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	312
AsuII	TTCGAA	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	75
BbsI	GAAGAC	3 cut(s)	57, 243, 287
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	4 cut(s)	7, 86, 281, 366
BcoDI	GTCTC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	214, 339
BlsI	GCNGC	2 cut(s)	215, 340
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	76, 395
BpiI	GAAGAC	3 cut(s)	57, 243, 287
Bpu14I	TTCGAA	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
BseCI	ATCGAT	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	2 cut(s)	192, 273
BseXI	GCAGC	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	88, 124
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	88, 124
BsnI	GGCC	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	216
BspDI	ATCGAT	1 cut(s)	284
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	76, 395
BspPI	GGATC	1 cut(s)	280
BspT104I	TTCGAA	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	100, 168
BstAUI	TGTACA	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	2 cut(s)	192, 273
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 400
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	3 cut(s)	57, 243, 287
Bsu15I	ATCGAT	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	216
BsuTUI	ATCGAT	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	192, 273
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	387
CviJI	RGCY	6 cut(s)	5, 160, 216, 257, 318, 394
CviKI_1	RGCY	6 cut(s)	5, 160, 216, 257, 318, 394
CviQI	GTAC	1 cut(s)	387
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	66, 221
EcoRV	GATATC	1 cut(s)	33
FaiI	YATR	4 cut(s)	59, 219, 261, 365
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FaqI	GGGAC	2 cut(s)	88, 124
Fnu4HI	GCNGC	2 cut(s)	214, 339
FokI	GGATG	2 cut(s)	179, 260
Fsp4HI	GCNGC	2 cut(s)	214, 339
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	214, 339
HaeIII	GGCC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	3 cut(s)	23, 112, 292
HphI	GGTGA	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	2 cut(s)	239, 289
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	100, 168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 400
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	2 cut(s)	351, 399
LpnPI	CCDG	4 cut(s)	52, 57, 224, 302
Lsp1109I	GCAGC	1 cut(s)	350
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	6 cut(s)	59, 62, 227, 243, 287, 381
MluCI	AATT	2 cut(s)	382, 406
MlyI	GAGTC	2 cut(s)	106, 301
MnlI	CCTC	3 cut(s)	21, 171, 287
MseI	TTAA	2 cut(s)	156, 405
MslI	CAYNNNNRTG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	222, 400
NdeII	GATC	1 cut(s)	285
NlaIV	GGNNCC	2 cut(s)	76, 395
NspV	TTCGAA	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	215, 340
PleI	GAGTC	2 cut(s)	106, 300
PpsI	GAGTC	2 cut(s)	106, 300
PspN4I	GGNNCC	2 cut(s)	76, 395
PspPI	GGNCC	1 cut(s)	75
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	156, 405
SatI	GCNGC	2 cut(s)	214, 339
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	2 cut(s)	106, 301
SetI	ASST	2 cut(s)	320, 325
SfuI	TTCGAA	1 cut(s)	105
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	382, 406
SsiI	CCGC	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	100, 168
TaqI	TCGA	4 cut(s)	26, 105, 203, 284
TasI	AATT	2 cut(s)	382, 406
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	156, 405
Tru9I	TTAA	2 cut(s)	156, 405
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.