Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Reverse (-)

62539640 .. 62540950

Gene Structure 1311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG397800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCCCCTAGAGCGGTCAATGACTTAATCGCAGGGAGAGAAAAGTCAATATTCACCGTTGCTGCTGCTTCCTCAAACCAATCTCCGCCTCCGGAAAATTCCACAATCAAAAGGCTACAATCTGAATTGAAGGACTTAATGTGGAGGCAAAGGTTCAGTGTTGAAGGAAAAGAGTACAGACTATCCCTTCGCTTTCCGAATGATTATCCGTTCAAACCACCTTGCATCAACTTCGATTATCCTATCCCTTTTCACCCCAATGTGGATGCCTATGGAAAAATCTACTTGGATATTCTTCTACTGGAAGAATTCGATAAATGGTCATCTGCTTATGATGTGAGAACCGTGCTCTTATCCATCAAGAGTCTACTTGAAGATCCAAACCTAAGCACACCAGTCAACTGCGATGCAGCAAGACTTTGGAGTAATCAGAAAGAATATAAGGAGATGGTGGAGAAATTATACAAGCGTCCCCAATATGGATTAGAGAAGAGAACTATTGATCGATTTGGAGGGCAATTATGCGGTTTGCGAGAGGATTGTAAGGTGCTTTCTGAATGTTTAAGGCGGCATTCTTCCTTTATAAAAAGAAAAGTTTCAAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

202

Amino Acids

23.51

Weight (kDa)

9.13

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	55 - 153	1.9e-28	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	367
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	4 cut(s)	14, 86, 525, 568
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	2 cut(s)	97, 308
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	13, 262, 479
AgsI	TTSAA	5 cut(s)	130, 164, 214, 374, 600
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	91
ApeKI	GCWGC	3 cut(s)	62, 65, 410
ApoI	RAATTY	2 cut(s)	97, 308
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
Asp700I	GAANNNNTTC	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	46, 245
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	49, 52, 422
BccI	CCATC	2 cut(s)	365, 442
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BfaI	CTAG	1 cut(s)	9
BisI	GCNGC	4 cut(s)	63, 66, 411, 569
BlsI	GCNGC	4 cut(s)	64, 67, 412, 570
BmsI	GCATC	3 cut(s)	234, 256, 397
Bpu10I	CCTNAGC	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	505
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 262, 479
Bse1I	ACTGG	2 cut(s)	306, 395
BseAI	TCCGGA	1 cut(s)	91
BseCI	ATCGAT	1 cut(s)	505
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	3 cut(s)	13, 262, 479
BseNI	ACTGG	2 cut(s)	306, 395
BseXI	GCAGC	3 cut(s)	49, 52, 422
BshVI	ATCGAT	1 cut(s)	505
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	3 cut(s)	13, 262, 479
BsmFI	GGGAC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	571
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	376, 502
BspACI	CCGC	4 cut(s)	14, 86, 525, 568
BspDI	ATCGAT	1 cut(s)	505
BspEI	TCCGGA	1 cut(s)	91
BspPI	GGATC	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	306, 395
BssMI	GATC	2 cut(s)	376, 502
Bst4CI	ACNGT	2 cut(s)	58, 346
Bst6I	CTCTTC	1 cut(s)	485
BstDEI	CTNAG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	2 cut(s)	379, 505
BstMBI	GATC	2 cut(s)	376, 502
BstV1I	GCAGC	3 cut(s)	49, 52, 422
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
Bsu15I	ATCGAT	1 cut(s)	505
BsuTUI	ATCGAT	1 cut(s)	505
BtgZI	GCGATG	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	163
ClaI	ATCGAT	1 cut(s)	505
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	1 cut(s)	115
CviKI_1	RGCY	1 cut(s)	115
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	2 cut(s)	378, 504
DpnII	GATC	2 cut(s)	376, 502
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
EciI	GGCGGA	1 cut(s)	75
EcoRI	GAATTC	1 cut(s)	308
FaiI	YATR	7 cut(s)	273, 333, 441, 463, 480, 523, 584
FaqI	GGGAC	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	4 cut(s)	63, 66, 411, 569
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	4 cut(s)	63, 66, 411, 569
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	4 cut(s)	63, 66, 411, 569
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	458
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	2 cut(s)	46, 245
Hpy166II	GTNNAC	2 cut(s)	368, 400
Hpy188I	TCNGA	4 cut(s)	124, 198, 432, 556
Hpy188III	TCNNGA	2 cut(s)	92, 361
Hpy8I	GTNNAC	2 cut(s)	368, 400
HpyAV	CCTTC	3 cut(s)	124, 158, 197
HpyCH4III	ACNGT	2 cut(s)	58, 346
HpyCH4V	TGCA	2 cut(s)	225, 410
HpyF3I	CTNAG	1 cut(s)	386
Kpn2I	TCCGGA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	376, 502
LpnPI	CCDG	4 cut(s)	18, 105, 287, 408
Lsp1109I	GCAGC	3 cut(s)	49, 52, 422
LweI	GCATC	3 cut(s)	234, 256, 397
MaeI	CTAG	1 cut(s)	9
MalI	GATC	2 cut(s)	378, 504
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	2 cut(s)	376, 502
MboII	GAAGA	5 cut(s)	287, 317, 386, 502, 567
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	5 cut(s)	97, 125, 308, 458, 518
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	5 cut(s)	82, 99, 138, 506, 529
MroI	TCCGGA	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	595
MseI	TTAA	3 cut(s)	26, 137, 563
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	571
NdeII	GATC	2 cut(s)	376, 502
PctI	GAATGC	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	595
PkrI	GCNGC	4 cut(s)	64, 67, 412, 570
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PsiI	TTATAA	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	26, 137, 563
SatI	GCNGC	4 cut(s)	63, 66, 411, 569
Sau3AI	GATC	2 cut(s)	376, 502
SchI	GAGTC	1 cut(s)	373
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	4 cut(s)	155, 223, 387, 549
SfaNI	GCATC	3 cut(s)	234, 256, 397
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	5 cut(s)	97, 125, 308, 458, 518
SsiI	CCGC	4 cut(s)	14, 86, 525, 568
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	58, 346
TaqI	TCGA	3 cut(s)	234, 312, 505
TasI	AATT	5 cut(s)	97, 125, 308, 458, 518
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	571
Tru1I	TTAA	3 cut(s)	26, 137, 563
Tru9I	TTAA	3 cut(s)	26, 137, 563
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	3 cut(s)	62, 65, 410
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	163
XapI	RAATTY	2 cut(s)	97, 308
XmiI	GTMKAC	1 cut(s)	367
XmnI	GAANNNNTTC	1 cut(s)	595
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.