Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Forward (+)

49833566 .. 49834084

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0386900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGACATGAACAACAACACAAGTGGTTACTGGATGAGAGCCGTGAAGAAGAACAAGAGGGCACATGAAGAAGAGGAGTTTGATCTTGGTTTTGCTTTTACAGTTTACGATGCTGAGGGAATTGACCCACCGAACAAGAGCAAAATACCCGTTTCAGACCGGGTTTACGACTTGCTATGGTGGGTTGAACCTGGACAGGAATATTGGGCTGAAGAGTCTATTGTTGGGCGACCAAATCTTAAATGGGGCAGGATTTGGAAGGTTCGATTAGGGCAGCACGTGTGGCCAGGTTTTGTTCATGTTGAAATTATTCGTAGACGAGATGACAAAGAGCCGGGAACTTCTGGCGGCATAAAGACGCCGGAAAATTCCGGTGCCATAGCATCGGTGAACCGGGTCAGAATCCCTCTACCGATGCCCAATGAAAGGAAAGAAGGGCGATTTGGGCTTGAAAAAAGCGATGGGCCTGGGTTGATAGAGGAAGGCTATATATATGTTAAGATGCAAATGATTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

172

Amino Acids

19.89

Weight (kDa)

6.86

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	316
AciI	CCGC	1 cut(s)	348
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	231
AcvI	CACGTG	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	426
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	188, 305, 452
AjnI	CCWGG	3 cut(s)	190, 286, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AoxI	GGCC	2 cut(s)	284, 464
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	367
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	3 cut(s)	161, 336, 395
AsuHPI	GGTGA	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	374
BbrPI	CACGTG	1 cut(s)	280
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	3 cut(s)	192, 288, 468
BcnI	CCSGG	3 cut(s)	161, 336, 395
BisI	GCNGC	2 cut(s)	275, 349
BlsI	GCNGC	2 cut(s)	276, 350
Bme1390I	CCNGG	6 cut(s)	161, 192, 288, 336, 395, 468
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	6 cut(s)	161, 192, 288, 336, 395, 468
BmsI	GCATC	4 cut(s)	100, 392, 405, 492
Bpu10I	CCTNAGC	1 cut(s)	114
BpuMI	CCSGG	3 cut(s)	161, 336, 395
BsaAI	YACGTR	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	467
BsaWI	WCCGGW	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	1 cut(s)	426
Bse1I	ACTGG	1 cut(s)	35
BseBI	CCWGG	3 cut(s)	192, 288, 468
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	286
BshFI	GGCC	2 cut(s)	286, 466
BshNI	GGYRCC	1 cut(s)	374
BsiSI	CCGG	5 cut(s)	160, 335, 362, 372, 394
BslI	CCNNNNNNNGG	1 cut(s)	426
BsnI	GGCC	2 cut(s)	286, 466
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	2 cut(s)	286, 466
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	1 cut(s)	82
BssNI	GRCGYC	1 cut(s)	359
Bst2UI	CCWGG	3 cut(s)	192, 288, 468
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	2 cut(s)	66, 207
BstACI	GRCGYC	1 cut(s)	359
BstBAI	YACGTR	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 445
BstNI	CCWGG	3 cut(s)	192, 288, 468
BstSCI	CCNGG	6 cut(s)	159, 190, 286, 334, 393, 466
BstSLI	GKGCMC	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	286, 466
BtgZI	GCGATG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	464
CseI	GACGC	1 cut(s)	367
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	3 cut(s)	7, 65, 299
CviJI	RGCY	7 cut(s)	41, 209, 286, 334, 448, 466, 486
CviKI_1	RGCY	7 cut(s)	41, 209, 286, 334, 448, 466, 486
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	284
Eam1104I	CTCTTC	2 cut(s)	66, 207
EarI	CTCTTC	2 cut(s)	66, 207
Eco57I	CTGAAG	1 cut(s)	231
Eco72I	CACGTG	1 cut(s)	280
EcoRII	CCWGG	3 cut(s)	190, 286, 466
FaeI	CATG	3 cut(s)	10, 68, 302
FatI	CATG	3 cut(s)	6, 64, 298
FblI	GTMKAC	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	275, 349
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	2 cut(s)	275, 349
GluI	GCNGC	2 cut(s)	275, 349
HaeIII	GGCC	2 cut(s)	286, 466
HapII	CCGG	5 cut(s)	160, 335, 362, 372, 394
HgaI	GACGC	1 cut(s)	367
Hin1I	GRCGYC	1 cut(s)	359
Hin1II	CATG	3 cut(s)	10, 68, 302
HinfI	GANTC	2 cut(s)	215, 402
HpaII	CCGG	5 cut(s)	160, 335, 362, 372, 394
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	4 cut(s)	106, 166, 317, 391
Hpy188I	TCNGA	2 cut(s)	157, 401
Hpy8I	GTNNAC	4 cut(s)	106, 166, 317, 391
HpyAV	CCTTC	3 cut(s)	253, 428, 476
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 445
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	359
Hsp92II	CATG	3 cut(s)	10, 68, 302
Kzo9I	GATC	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	4 cut(s)	100, 392, 405, 492
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	5 cut(s)	58, 61, 80, 83, 224
MhlI	GDGCHC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	286
MluCI	AATT	3 cut(s)	120, 306, 367
MluNI	TGGCCA	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	5 cut(s)	51, 67, 109, 417, 472
Mox20I	TGGCCA	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	286
MseI	TTAA	2 cut(s)	240, 498
Msp20I	TGGCCA	1 cut(s)	286
MspI	CCGG	5 cut(s)	160, 335, 362, 372, 394
MspR9I	CCNGG	6 cut(s)	161, 192, 288, 336, 395, 468
MvaI	CCWGG	3 cut(s)	192, 288, 468
MwoI	GCNNNNNNNGC	2 cut(s)	283, 445
NciI	CCSGG	3 cut(s)	161, 336, 395
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	3 cut(s)	10, 68, 302
NlaIV	GGNNCC	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	402
PkrI	GCNGC	2 cut(s)	276, 350
PleI	GAGTC	1 cut(s)	223
PmaCI	CACGTG	1 cut(s)	280
PmlI	CACGTG	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	223
Ppu21I	YACGTR	1 cut(s)	280
Psp6I	CCWGG	3 cut(s)	190, 286, 466
PspCI	CACGTG	1 cut(s)	280
PspGI	CCWGG	3 cut(s)	190, 286, 466
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	240, 498
SatI	GCNGC	2 cut(s)	275, 349
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	6 cut(s)	161, 192, 288, 336, 395, 468
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	5 cut(s)	193, 264, 282, 292, 518
SfaNI	GCATC	4 cut(s)	100, 392, 405, 492
Sse9I	AATT	3 cut(s)	120, 306, 367
SsiI	CCGC	1 cut(s)	348
SspI	AATATT	1 cut(s)	203
StyD4I	CCNGG	6 cut(s)	159, 190, 286, 334, 393, 466
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	265
TasI	AATT	3 cut(s)	120, 306, 367
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	402
Tru1I	TTAA	2 cut(s)	240, 498
Tru9I	TTAA	2 cut(s)	240, 498
TseI	GCWGC	1 cut(s)	274
TspDTI	ATGAA	4 cut(s)	23, 81, 287, 438
XapI	RAATTY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.