Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Reverse (-)

37642209 .. 37643461

Gene Structure 1253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCTTCTGTGAACCAAGACAACGTCCCAGGGGCCACAGGCACCGCTCCGTCGAAGAAATCTCAGGCGCCGGCGAAGACCGCCGACTCTCAGTCGGTTCTCAAAAGGCTTCAATCTGAGTTGATGGCGTTAATGATTGGTGGAGATTCGGGGATATCTGCGTTCCCTGAAGAAGACAACATATTCTGCTGGAAAGGGACCATCAATGGAAGCAAGGAGACAGTTTTCGAAGGGACTCAATACAGATTGTCCCTTTCTTTCCCCAATGACTATCCCTTTAAGCCTCCCAAGGTCAAGTTCGAGTCTCTCTGTTTCCATCCCAATGTTGATGTCCGTGGCCACATTTGCTTGGATATTCTTCAGGATAAATGGTCTTCGGCTTATGATGTGAGAACCATCCTCTTATCGATCCAGAGTCTTCTAGGAGAACCAAACACTAGCTCACCTTTGAACCCCCAAGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATGGTGGAGAAGTTGTACAAGCCTCCTAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

177

Amino Acids

19.58

Weight (kDa)

6.12

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	36 - 170	2.6e-47	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	41, 67
AccBSI	CCGCTC	1 cut(s)	47
AciI	CCGC	2 cut(s)	45, 81
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	189, 344
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	515
AgsI	TTSAA	2 cut(s)	113, 451
AhdI	GACNNNNNGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	1 cut(s)	441
AluI	AGCT	1 cut(s)	441
Alw26I	GTCTC	2 cut(s)	212, 309
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	2 cut(s)	33, 337
ApeKI	GCWGC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	2 cut(s)	33, 198
AsuHPI	GGTGA	1 cut(s)	435
AsuII	TTCGAA	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	198
BalI	TGGCCA	1 cut(s)	339
BanI	GGYRCC	2 cut(s)	41, 67
BbsI	GAAGAC	4 cut(s)	83, 180, 366, 410
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	5 cut(s)	118, 209, 324, 404, 493
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	212, 309
BfaI	CTAG	2 cut(s)	422, 438
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	198
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	33, 198
BmiI	GGNNCC	4 cut(s)	34, 43, 69, 199
BmrFI	CCNGG	1 cut(s)	30
BpiI	GAAGAC	4 cut(s)	83, 180, 366, 410
Bpu14I	TTCGAA	1 cut(s)	228
Bsa29I	ATCGAT	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	4 cut(s)	28, 29, 288, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bse118I	RCCGGY	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	30
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	4 cut(s)	28, 29, 288, 334
BseGI	GGATG	2 cut(s)	316, 396
BseMII	CTCAG	3 cut(s)	77, 104, 108
BseXI	GCAGC	1 cut(s)	473
BshFI	GGCC	2 cut(s)	35, 339
BshNI	GGYRCC	2 cut(s)	41, 67
BshVI	ATCGAT	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	4 cut(s)	11, 211, 235, 247
BsmAI	GTCTC	2 cut(s)	212, 309
BsmFI	GGGAC	4 cut(s)	11, 211, 235, 247
BsnI	GGCC	2 cut(s)	35, 339
Bsp119I	TTCGAA	1 cut(s)	228
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	1 cut(s)	408
BspACI	CCGC	2 cut(s)	45, 81
BspANI	GGCC	2 cut(s)	35, 339
BspCNI	CTCAG	3 cut(s)	76, 103, 109
BspDI	ATCGAT	1 cut(s)	407
BspLI	GGNNCC	4 cut(s)	34, 43, 69, 199
BspPI	GGATC	1 cut(s)	403
BspT104I	TTCGAA	1 cut(s)	228
BspT107I	GGYRCC	2 cut(s)	41, 67
BsrBI	CCGCTC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	513
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	4 cut(s)	28, 29, 288, 334
BssMI	GATC	1 cut(s)	408
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	223
BstACI	GRCGYC	1 cut(s)	68
BstAUI	TGTACA	1 cut(s)	513
BstBI	TTCGAA	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	63, 90, 117
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	316, 396
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	2 cut(s)	212, 309
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 345
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	473
BstV2I	GAAGAC	4 cut(s)	83, 180, 366, 410
Bsu15I	ATCGAT	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	35, 339
BsuTUI	ATCGAT	1 cut(s)	407
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	316, 396
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	33, 198
ClaI	ATCGAT	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	514
CviJI	RGCY	8 cut(s)	5, 35, 109, 283, 339, 380, 441, 520
CviKI_1	RGCY	8 cut(s)	5, 35, 109, 283, 339, 380, 441, 520
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	3 cut(s)	63, 90, 117
DinI	GGCGCC	1 cut(s)	69
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
DriI	GACNNNNNGTC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	337
Eam1105I	GACNNNNNGTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	189, 344
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	288
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	288
FaiI	YATR	3 cut(s)	182, 384, 492
FaqI	GGGAC	4 cut(s)	11, 211, 235, 247
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	2 cut(s)	303, 383
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	2 cut(s)	422, 438
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	35, 339
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	5 cut(s)	86, 146, 235, 302, 415
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	3 cut(s)	362, 412, 482
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 345
HpyF3I	CTNAG	3 cut(s)	63, 90, 117
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	68
HspAI	GCGC	1 cut(s)	68
KasI	GGCGCC	1 cut(s)	67
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	2 cut(s)	52, 474
LpnPI	CCDG	9 cut(s)	15, 24, 42, 50, 84, 175, 180, 347, 425
Lsp1109I	GCAGC	1 cut(s)	473
MaeI	CTAG	2 cut(s)	422, 438
MaeII	ACGT	1 cut(s)	24
MalI	GATC	1 cut(s)	410
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	1 cut(s)	408
MboII	GAAGA	9 cut(s)	67, 88, 182, 185, 350, 366, 410, 497, 508
MlsI	TGGCCA	1 cut(s)	339
MluNI	TGGCCA	1 cut(s)	339
Mly113I	GGCGCC	1 cut(s)	68
MlyI	GAGTC	4 cut(s)	80, 229, 311, 424
MnlI	CCTC	3 cut(s)	294, 410, 531
Mox20I	TGGCCA	1 cut(s)	339
MreI	CGCCGGCG	1 cut(s)	70
MroNI	GCCGGC	1 cut(s)	70
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	3 cut(s)	131, 279, 532
MslI	CAYNNNNRTG	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	339
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	80, 345
NaeI	GCCGGC	1 cut(s)	72
NarI	GGCGCC	1 cut(s)	68
NdeII	GATC	1 cut(s)	408
NgoMIV	GCCGGC	1 cut(s)	70
NlaIV	GGNNCC	4 cut(s)	34, 43, 69, 199
NspV	TTCGAA	1 cut(s)	228
PasI	CCCWGGG	1 cut(s)	29
PdiI	GCCGGC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	146
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	4 cut(s)	80, 229, 310, 423
PluTI	GGCGCC	1 cut(s)	71
PpsI	GAGTC	4 cut(s)	80, 229, 310, 423
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	4 cut(s)	34, 43, 69, 199
PspPI	GGNCC	2 cut(s)	33, 198
PsyI	GACNNNGTC	1 cut(s)	23
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	131, 279, 532
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	2 cut(s)	33, 198
SchI	GAGTC	4 cut(s)	80, 229, 311, 424
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	4 cut(s)	27, 294, 443, 448
SfoI	GGCGCC	1 cut(s)	69
SfuI	TTCGAA	1 cut(s)	228
SgrAI	CRCCGGYG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	321
SsiI	CCGC	2 cut(s)	45, 81
SspDI	GGCGCC	1 cut(s)	67
SspMI	CTAG	2 cut(s)	422, 438
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	4 cut(s)	53, 228, 300, 407
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	3 cut(s)	131, 279, 532
Tru9I	TTAA	3 cut(s)	131, 279, 532
TseI	GCWGC	1 cut(s)	461
TspGWI	ACGGA	2 cut(s)	39, 323
Tth111I	GACNNNGTC	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	198
XspI	CTAG	2 cut(s)	422, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.