Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Forward (+)

54149226 .. 54150743

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG361700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGTGGAGATTCGGGGATATCCGCGTTCCCTGAAGAAGACAACATATTCTGCTGGAAAGGGACCATCAATGGAAGCAAAGAGACAGTTTTCGAAGGGACTCAATACAGATTGTCCCTTTCTTTCCCCAATGACTATCCCTTTAAGCCTCCCAAGGTCAAGTTCGAGTCTTTCTGTTTCCATCCCAATGTCGATGTCCGCGGCCACATTTGCTTGGATATTCTTCAGGATAAATGGTCTTCGGCTTATGATGTGAGAACCATCCTCTTATCGATCCAGAGTCTTCTAGGAGGTAATCTCTTACTGGTTTTCTTTGTCTATGCTGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

110

Amino Acids

12.36

Weight (kDa)

5.18

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	5 - 96	1.2e-36	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	26, 201
AciI	CCGC	3 cut(s)	24, 199, 201
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	202
AcuI	CTGAAG	2 cut(s)	54, 209
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	268
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	63
AsuII	TTCGAA	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	63
BbsI	GAAGAC	3 cut(s)	45, 231, 275
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	3 cut(s)	74, 189, 269
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	287
BisI	GCNGC	2 cut(s)	202, 324
BlsI	GCNGC	2 cut(s)	203, 325
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	64
BpiI	GAAGAC	3 cut(s)	45, 231, 275
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
Bpu14I	TTCGAA	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	153, 199
Bse1I	ACTGG	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	153, 199
BseGI	GGATG	2 cut(s)	181, 261
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	310
Bsh1236I	CGCG	2 cut(s)	26, 201
BshFI	GGCC	1 cut(s)	204
BshVI	ATCGAT	1 cut(s)	272
BslFI	GGGAC	3 cut(s)	76, 100, 112
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	3 cut(s)	76, 100, 112
BsnI	GGCC	1 cut(s)	204
Bsp119I	TTCGAA	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	3 cut(s)	24, 199, 201
BspANI	GGCC	1 cut(s)	204
BspDI	ATCGAT	1 cut(s)	272
BspFNI	CGCG	2 cut(s)	26, 201
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	268
BspT104I	TTCGAA	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	153, 199
BssMI	GATC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	181, 261
BstFNI	CGCG	2 cut(s)	26, 201
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstUI	CGCG	2 cut(s)	26, 201
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	3 cut(s)	45, 231, 275
Bsu15I	ATCGAT	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	204
BsuTUI	ATCGAT	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	181, 261
Cfr13I	GGNCC	1 cut(s)	63
Cfr42I	CCGCGG	1 cut(s)	202
ClaI	ATCGAT	1 cut(s)	272
CviJI	RGCY	3 cut(s)	148, 204, 245
CviKI_1	RGCY	3 cut(s)	148, 204, 245
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	54, 209
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaiI	YATR	3 cut(s)	47, 249, 321
FaqI	GGGAC	3 cut(s)	76, 100, 112
Fnu4HI	GCNGC	2 cut(s)	202, 324
FokI	GGATG	2 cut(s)	168, 248
Fsp4HI	GCNGC	2 cut(s)	202, 324
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	2 cut(s)	202, 324
HaeIII	GGCC	1 cut(s)	204
HinfI	GANTC	4 cut(s)	11, 100, 167, 280
Hpy188III	TCNNGA	2 cut(s)	227, 277
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
KspI	CCGCGG	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	273
LpnPI	CCDG	5 cut(s)	40, 45, 212, 290, 290
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	287
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	5 cut(s)	47, 50, 215, 231, 275
MlyI	GAGTC	3 cut(s)	94, 176, 289
MnlI	CCTC	3 cut(s)	159, 275, 284
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	201
MvnI	CGCG	2 cut(s)	26, 201
MwoI	GCNNNNNNNGC	1 cut(s)	210
NdeII	GATC	1 cut(s)	273
NlaIV	GGNNCC	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	203, 325
PleI	GAGTC	3 cut(s)	94, 175, 288
PpsI	GAGTC	3 cut(s)	94, 175, 288
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	186
SacII	CCGCGG	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	202, 324
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	3 cut(s)	94, 176, 289
SetI	ASST	2 cut(s)	159, 295
Sfr303I	CCGCGG	1 cut(s)	202
SfuI	TTCGAA	1 cut(s)	93
SgrBI	CCGCGG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	186
SsiI	CCGC	3 cut(s)	24, 199, 201
SspMI	CTAG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	4 cut(s)	93, 165, 192, 272
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	63
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.