Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Reverse (-)

18092497 .. 18094392

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G256900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTGCTGTGAACCAAGATAACACTCTAGTAGTGGCCACAACCACTGCTCCCTCAAACTCAAAGCAATCTCAGCCGCGAGCAAAGACCGTTGATTCTCAGTCTGTTCTCAAAAGGCTGCAATCTGAGTTGATGGCCTTAATGATGAGTGGGGATTCTGGGATATCTGCCTTCCCTGAAGAAGACAACATATTCTGCTGGAAAGGGACAATCATTGGAAGCAAAGATACAGTGTTTGAAGGGACAGAATACAGACTATCCCTTACCTTTCCCAATGACTATCCATTCAAACCTCCAAAGGTCAAGTTTGAGACTCTCTGCTTTCATCCCAATGTGGATCTGGTTGGCAACATTTGCTTGGATATTCTTCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCTCTTATCCATCCAGAGTCTGCTTGGAGAACCAAACATCAGCTCACCTTTGAACAACCAAGCAGCACAACTTTGGAGCAATCAAGATGATTATAGGAAGATGGTGGAGAAGTTGTACAAATCTCCAAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

181

Amino Acids

20.08

Weight (kDa)

5.43

Isoelectric Point (pI)

63.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	79
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	345
AcoI	YGGCCR	1 cut(s)	36
AcuI	CTGAAG	2 cut(s)	198, 353
AfaI	GTAC	1 cut(s)	524
AgsI	TTSAA	3 cut(s)	239, 289, 460
AluBI	AGCT	3 cut(s)	389, 450, 539
AluI	AGCT	3 cut(s)	389, 450, 539
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	345
AlwNI	CAGNNNCTG	1 cut(s)	427
AoxI	GGCC	2 cut(s)	36, 135
ApeKI	GCWGC	3 cut(s)	5, 118, 470
AsuHPI	GGTGA	1 cut(s)	444
BalI	TGGCCA	1 cut(s)	38
BarI	GAAGNNNNNNTAC	2 cut(s)	211, 243
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	105, 482
BccI	CCATC	3 cut(s)	127, 425, 502
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	4 cut(s)	6, 77, 119, 471
BlsI	GCNGC	4 cut(s)	7, 78, 120, 472
BpiI	GAAGAC	1 cut(s)	189
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 506, 536
BseGI	GGATG	2 cut(s)	325, 417
BseMII	CTCAG	3 cut(s)	86, 113, 117
BseXI	GCAGC	2 cut(s)	105, 482
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	2 cut(s)	38, 137
BslFI	GGGAC	2 cut(s)	220, 256
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	2 cut(s)	220, 256
BsnI	GGCC	2 cut(s)	38, 137
Bsp1407I	TGTACA	1 cut(s)	522
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	38, 137
BspCNI	CTCAG	3 cut(s)	85, 112, 118
BspFNI	CGCG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	345
BsrGI	TGTACA	1 cut(s)	522
BssMI	GATC	1 cut(s)	337
Bst4CI	ACNGT	2 cut(s)	91, 232
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstAUI	TGTACA	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	3 cut(s)	72, 99, 126
BstF5I	GGATG	2 cut(s)	325, 417
BstFNI	CGCG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 354
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	2 cut(s)	105, 482
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	38, 137
BtsCI	GGATG	2 cut(s)	325, 417
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	45, 237
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	523
CviJI	RGCY	8 cut(s)	5, 38, 76, 118, 137, 389, 450, 539
CviKI_1	RGCY	8 cut(s)	5, 38, 76, 118, 137, 389, 450, 539
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	3 cut(s)	72, 99, 126
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	165
Eco57I	CTGAAG	2 cut(s)	198, 353
EcoRV	GATATC	1 cut(s)	165
FaiI	YATR	3 cut(s)	191, 393, 501
FaqI	GGGAC	2 cut(s)	220, 256
Fnu4HI	GCNGC	4 cut(s)	6, 77, 119, 471
FokI	GGATG	2 cut(s)	312, 404
Fsp4HI	GCNGC	4 cut(s)	6, 77, 119, 471
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	4 cut(s)	6, 77, 119, 471
HaeIII	GGCC	2 cut(s)	38, 137
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	4 cut(s)	95, 155, 313, 424
HphI	GGTGA	1 cut(s)	444
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	3 cut(s)	371, 421, 491
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	181, 233
HpyCH4III	ACNGT	2 cut(s)	91, 232
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 354
HpyF3I	CTNAG	3 cut(s)	72, 99, 126
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	55, 483
LpnPI	CCDG	6 cut(s)	144, 184, 189, 326, 356, 434
Lsp1109I	GCAGC	2 cut(s)	105, 482
MaeI	CTAG	1 cut(s)	29
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	4 cut(s)	191, 194, 359, 517
MflI	RGATCY	1 cut(s)	337
MlsI	TGGCCA	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	307, 433
MnlI	CCTC	2 cut(s)	64, 303
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	2 cut(s)	140, 541
MslI	CAYNNNNRTG	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	38
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	73, 354
NdeII	GATC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	95, 155
PkrI	GCNGC	4 cut(s)	7, 78, 120, 472
PleI	GAGTC	2 cut(s)	307, 432
PpsI	GAGTC	2 cut(s)	307, 432
PstNI	CAGNNNCTG	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	140, 541
SatI	GCNGC	4 cut(s)	6, 77, 119, 471
Sau3AI	GATC	1 cut(s)	337
SchI	GAGTC	2 cut(s)	307, 433
SetI	ASST	7 cut(s)	269, 295, 303, 391, 452, 457, 541
SmiMI	CAYNNNNRTG	1 cut(s)	330
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	91, 232
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	95, 155
Tru1I	TTAA	2 cut(s)	140, 541
Tru9I	TTAA	2 cut(s)	140, 541
TscAI	CASTG	2 cut(s)	52, 237
TseI	GCWGC	3 cut(s)	5, 118, 470
TspDTI	ATGAA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	52, 237
XcmI	CCANNNNNNNNNTGG	2 cut(s)	337, 428
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.