Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Forward (+)

10474686 .. 10476505

Gene Structure 1820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11955.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTCTAATGATGGGTGGAGATTCGGGGATATCTGCTTTCCCTGAAGAAGACAACATATTCTGCTGGAAAGGGACCATCAATGGAAGCAAAGACACGGTTTTCGAAGGGACTCAATACAGATTGTTGCTCTCTTTCCCCAATGACTATCCCTTTAAGCCTCCACGGTCAAGTTTGAGACTTTCTGCTTTCATCCCAATGTCGAATGTTCGCGGCCATATTTGCTTGGATATTCTTCAGGATAAATGGTCTTCGGCTTATGATGTGAGAACCATCCTCTTATCGATCCAGAGTCTTCTCGGAGAACCAAACACAAGCTCAACTTTGAACCCCCAAGCAGCGCAACTTTGGAGCAATCAAGTAGAATATAGGAAGATGGTGGAAAATTGTACAAGGCTCCAAACGCTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

138

Amino Acids

15.44

Weight (kDa)

5.75

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	8 - 130	1.1e-35	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	213
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	1 cut(s)	214
AcuI	CTGAAG	2 cut(s)	66, 221
AfaI	GTAC	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	328
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	280
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	75
AsuII	TTCGAA	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	75
BbsI	GAAGAC	3 cut(s)	57, 243, 287
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	4 cut(s)	7, 86, 281, 370
BcoDI	GTCTC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	214, 339
BlsI	GCNGC	2 cut(s)	215, 340
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	76, 398
BpiI	GAAGAC	3 cut(s)	57, 243, 287
Bpu14I	TTCGAA	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	164
BseCI	ATCGAT	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	2 cut(s)	192, 273
BseXI	GCAGC	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	88, 124
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	88, 124
BsnI	GGCC	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	216
BspDI	ATCGAT	1 cut(s)	284
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	76, 398
BspPI	GGATC	1 cut(s)	280
BspT104I	TTCGAA	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	100, 168
BstAUI	TGTACA	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	2 cut(s)	192, 273
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 403
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	3 cut(s)	57, 243, 287
Bsu15I	ATCGAT	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	216
BsuTUI	ATCGAT	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	192, 273
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	390
CviJI	RGCY	6 cut(s)	5, 160, 216, 257, 318, 397
CviKI_1	RGCY	6 cut(s)	5, 160, 216, 257, 318, 397
CviQI	GTAC	1 cut(s)	390
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	66, 221
EcoRV	GATATC	1 cut(s)	33
FaiI	YATR	4 cut(s)	59, 219, 261, 369
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FaqI	GGGAC	2 cut(s)	88, 124
Fnu4HI	GCNGC	2 cut(s)	214, 339
FokI	GGATG	2 cut(s)	179, 260
Fsp4HI	GCNGC	2 cut(s)	214, 339
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	214, 339
HaeIII	GGCC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	3 cut(s)	23, 112, 292
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	2 cut(s)	239, 289
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	100, 168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 403
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	2 cut(s)	351, 402
LpnPI	CCDG	4 cut(s)	52, 57, 224, 302
Lsp1109I	GCAGC	1 cut(s)	350
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	6 cut(s)	59, 62, 227, 243, 287, 385
MluCI	AATT	2 cut(s)	385, 409
MlyI	GAGTC	2 cut(s)	106, 301
MnlI	CCTC	2 cut(s)	171, 287
MseI	TTAA	2 cut(s)	156, 408
MslI	CAYNNNNRTG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	222, 403
NdeII	GATC	1 cut(s)	285
NlaIV	GGNNCC	2 cut(s)	76, 398
NspV	TTCGAA	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	215, 340
PleI	GAGTC	2 cut(s)	106, 300
PpsI	GAGTC	2 cut(s)	106, 300
PspN4I	GGNNCC	2 cut(s)	76, 398
PspPI	GGNCC	1 cut(s)	75
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	156, 408
SatI	GCNGC	2 cut(s)	214, 339
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	2 cut(s)	106, 301
SetI	ASST	1 cut(s)	320
SfuI	TTCGAA	1 cut(s)	105
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	385, 409
SsiI	CCGC	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	100, 168
TaqI	TCGA	3 cut(s)	105, 203, 284
TasI	AATT	2 cut(s)	385, 409
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	156, 408
Tru9I	TTAA	2 cut(s)	156, 408
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.