Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Reverse (-)

63124738 .. 63126048

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCCCCTAGAGCGGTCAATGACTTAATCGCAGGGAGAGAAAAGTCAATATTCACCGGTGGTGCTCCCGCAGACCCATGGACGATAACCACCCATGACGACTGTTACCGTGTTCACACTAATCGAGTGGCCACAGTTGCTGCTGCTTCCTCAAACCAATCTCCGCCTCCGGAAAATTCCACAATCAAAAGGCTACAATCTGAATTGAAGGACTTAATGATGAGTGACTGTGACTCTGGGATATCAGCCTTTCCTGAAAAGGACAATATAATGTGCTGGAAAGGGAGAATTAGTGGAGGCAAAGGTTCAGTGTTTGAAGGAAAAGAGTACAGACTATCCCTTCGCTTTCCGAATGATTATCCGTTCAAACCACCTTGCATCAACTTCGATTATCCTATCCCTTTTCACCCCAATGTGGATGCCTATGGAAAAATCTACTTGGATATTCTTCTACTGGCAGAATTCGATAAATGGTCATCTGCTTATGATGTGAGAACCGTGCTCTTATCCATCAAGAGTCTACTTGAAGATCCAAACCTAAGCACACCAGTCAACTGCGATGCAGCAAGACTTTGGAGTAATCAGAAAGAATATAAGGAGATGGTGGAGAAATTATACAAGCGTCCCCAATATGGATTAGAGAAGAGAACTATTGATCGATTTGGAGGGCAATTATGCGGTTTGCGAGAGGATTGTAAGGTGCTTTCTGAATGTTTAAGGCGGCATTCTTCCTTTATAAAAAGAAAAGTTTCAAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

253

Amino Acids

28.74

Weight (kDa)

8.69

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	64 - 204	6.1e-38	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	737
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	520
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	5 cut(s)	14, 69, 164, 678, 721
AclWI	GGATC	1 cut(s)	524
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	175, 461
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	13, 415, 632
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	5 cut(s)	208, 317, 367, 527, 753
Alw21I	GWGCWC	2 cut(s)	67, 504
AlwI	GGATC	1 cut(s)	524
AlwNI	CAGNNNCTG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	3 cut(s)	140, 143, 563
ApoI	RAATTY	2 cut(s)	175, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
AsiGI	ACCGGT	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	748
AsuHPI	GGTGA	2 cut(s)	46, 398
BalI	TGGCCA	1 cut(s)	131
Bbv12I	GWGCWC	2 cut(s)	67, 504
BbvI	GCAGC	3 cut(s)	127, 130, 575
BccI	CCATC	2 cut(s)	518, 595
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BfaI	CTAG	1 cut(s)	9
BisI	GCNGC	4 cut(s)	141, 144, 564, 722
BlsI	GCNGC	4 cut(s)	142, 145, 565, 723
BmsI	GCATC	3 cut(s)	387, 409, 550
Bpu10I	CCTNAGC	1 cut(s)	539
Bsa29I	ATCGAT	1 cut(s)	658
BsaJI	CCNNGG	1 cut(s)	77
BsaWI	WCCGGW	2 cut(s)	56, 169
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 415, 632
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	459, 548
BseAI	TCCGGA	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	658
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	3 cut(s)	13, 415, 632
BseNI	ACTGG	2 cut(s)	459, 548
BseXI	GCAGC	3 cut(s)	127, 130, 575
BshFI	GGCC	1 cut(s)	131
BshTI	ACCGGT	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	658
BsiHKAI	GWGCWC	2 cut(s)	67, 504
BsiSI	CCGG	2 cut(s)	57, 170
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	3 cut(s)	13, 415, 632
BsmFI	GGGAC	1 cut(s)	609
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	67, 504
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	529, 655
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	5 cut(s)	14, 69, 164, 678, 721
BspANI	GGCC	1 cut(s)	131
BspDI	ATCGAT	1 cut(s)	658
BspEI	TCCGGA	1 cut(s)	169
BspPI	GGATC	1 cut(s)	524
BsrBI	CCGCTC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	459, 548
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	529, 655
BssT1I	CCWWGG	1 cut(s)	77
Bst4CI	ACNGT	5 cut(s)	104, 110, 136, 230, 499
Bst6I	CTCTTC	1 cut(s)	638
BstDEI	CTNAG	1 cut(s)	539
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	2 cut(s)	532, 658
BstMBI	GATC	2 cut(s)	529, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstV1I	GCAGC	3 cut(s)	127, 130, 575
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
Bsu15I	ATCGAT	1 cut(s)	658
BsuRI	GGCC	1 cut(s)	131
BsuTUI	ATCGAT	1 cut(s)	658
BtgI	CCRYGG	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	315
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	56
ClaI	ATCGAT	1 cut(s)	658
CseI	GACGC	1 cut(s)	611
Csp6I	GTAC	1 cut(s)	328
CspAI	ACCGGT	1 cut(s)	56
CviAII	CATG	2 cut(s)	78, 95
CviJI	RGCY	3 cut(s)	131, 193, 248
CviKI_1	RGCY	3 cut(s)	131, 193, 248
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	539
DpnI	GATC	2 cut(s)	531, 657
DpnII	GATC	2 cut(s)	529, 655
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
EciI	GGCGGA	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	461
EcoRV	GATATC	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	2 cut(s)	81, 98
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	2 cut(s)	77, 94
FauI	CCCGC	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	520
Fnu4HI	GCNGC	4 cut(s)	141, 144, 564, 722
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	4 cut(s)	141, 144, 564, 722
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	4 cut(s)	141, 144, 564, 722
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	2 cut(s)	57, 170
HgaI	GACGC	1 cut(s)	611
Hin1II	CATG	2 cut(s)	81, 98
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	2 cut(s)	233, 517
HpaII	CCGG	2 cut(s)	57, 170
HphI	GGTGA	2 cut(s)	46, 398
Hpy166II	GTNNAC	3 cut(s)	115, 521, 553
Hpy188I	TCNGA	4 cut(s)	202, 351, 585, 709
Hpy188III	TCNNGA	3 cut(s)	170, 254, 514
Hpy8I	GTNNAC	3 cut(s)	115, 521, 553
HpyAV	CCTTC	3 cut(s)	202, 311, 350
HpyCH4III	ACNGT	5 cut(s)	104, 110, 136, 230, 499
HpyCH4V	TGCA	2 cut(s)	378, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	539
Hsp92II	CATG	2 cut(s)	81, 98
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	529, 655
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	8 cut(s)	18, 70, 183, 222, 262, 267, 440, 561
Lsp1109I	GCAGC	3 cut(s)	127, 130, 575
LweI	GCATC	3 cut(s)	387, 409, 550
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	3 cut(s)	104, 224, 230
MalI	GATC	2 cut(s)	531, 657
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	2 cut(s)	529, 655
MboII	GAAGA	4 cut(s)	440, 539, 655, 720
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	2 cut(s)	67, 504
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	6 cut(s)	175, 203, 288, 461, 611, 671
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	227, 526
MnlI	CCTC	5 cut(s)	160, 177, 290, 659, 682
Mox20I	TGGCCA	1 cut(s)	131
MroI	TCCGGA	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	748
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	3 cut(s)	26, 215, 716
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	131
MspI	CCGG	2 cut(s)	57, 170
Mva1269I	GAATGC	1 cut(s)	724
MwoI	GCNNNNNNNGC	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	2 cut(s)	529, 655
NlaIII	CATG	2 cut(s)	81, 98
NmuCI	GTSAC	2 cut(s)	224, 230
PctI	GAATGC	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	748
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	4 cut(s)	142, 145, 565, 723
PleI	GAGTC	2 cut(s)	227, 525
PpsI	GAGTC	2 cut(s)	227, 525
PsiI	TTATAA	1 cut(s)	737
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	26, 215, 716
SatI	GCNGC	4 cut(s)	141, 144, 564, 722
Sau3AI	GATC	2 cut(s)	529, 655
SchI	GAGTC	2 cut(s)	227, 526
SduI	GDGCHC	2 cut(s)	67, 504
SetI	ASST	4 cut(s)	307, 376, 540, 702
SfaNI	GCATC	3 cut(s)	387, 409, 550
SgrAI	CRCCGGYG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	411
Sse9I	AATT	6 cut(s)	175, 203, 288, 461, 611, 671
SsiI	CCGC	5 cut(s)	14, 69, 164, 678, 721
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	5 cut(s)	104, 110, 136, 230, 499
TaqI	TCGA	4 cut(s)	124, 387, 465, 658
TasI	AATT	6 cut(s)	175, 203, 288, 461, 611, 671
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	724
Tru1I	TTAA	3 cut(s)	26, 215, 716
Tru9I	TTAA	3 cut(s)	26, 215, 716
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	2 cut(s)	224, 230
TseI	GCWGC	3 cut(s)	140, 143, 563
Tsp45I	GTSAC	2 cut(s)	224, 230
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	315
XapI	RAATTY	2 cut(s)	175, 461
XmiI	GTMKAC	1 cut(s)	520
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.