Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Reverse (-)

26407982 .. 26409894

Gene Structure 1913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1187700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTGCTGTGAACCAAGATAACAGTCTTGTAGTGGCCGGAGCCACTGCTCCCTCGAACTCAAAGCAATCTCAGCCTCGCCCCAAGACCCTTGATTCTCAGTCCGTTCTCAAAAGGCTGCAATCTGAGTTGATGGCCTTAATGATGAGTGGGGATTCCGGGATATCCGCATTCCCCGAGGAAGACAACATTTTCTGCTGGAAAGGGACAATCATTGGAAGCAAAGAGACGGTGTTTGAAGGCACAGAATACAGACTCTCCCTCACCTTTCCCAATGACTATCCATTCAAACCCCCAAAGGTCAAGTTTGAGACTGTCCTCTTTCACCCAAATGTCGATCTTGTCGGCAACATTTGCCTGGATATTCTACAGGATAAATGGTCATCTGCTTATGATGTGAGAACCATACTCTTATCCATCCAGAGTCTTCTTGGAGAACCAAACATCAACTCTCCTTTGAATGCCCAAGCAGCACAATTGTGGAGCAACCAAGAAGAATATAGGAAGATGGTGGAGAAGTTGTACAAAGTTCCAAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

181

Amino Acids

20.07

Weight (kDa)

5.48

Isoelectric Point (pI)

65.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	39 - 173	1.6e-48	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	1 cut(s)	524
AgsI	TTSAA	3 cut(s)	239, 289, 460
AjnI	CCWGG	1 cut(s)	357
AleI	CACNNNNGTG	1 cut(s)	478
Alw26I	GTCTC	2 cut(s)	221, 305
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	36, 135
ApeKI	GCWGC	3 cut(s)	5, 118, 470
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	256, 317
AvaI	CYCGRG	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	189, 419
BbvI	GCAGC	2 cut(s)	105, 482
BccI	CCATC	3 cut(s)	127, 425, 502
BciT130I	CCWGG	1 cut(s)	359
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	221, 305
BfmI	CTRYAG	1 cut(s)	368
BisI	GCNGC	3 cut(s)	6, 119, 471
BlsI	GCNGC	3 cut(s)	7, 120, 472
Bme1390I	CCNGG	2 cut(s)	160, 359
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	160, 359
BpiI	GAAGAC	2 cut(s)	189, 419
BpuMI	CCSGG	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	4 cut(s)	242, 272, 506, 536
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	417
BseMII	CTCAG	3 cut(s)	86, 113, 117
BseXI	GCAGC	2 cut(s)	105, 482
BshFI	GGCC	2 cut(s)	38, 137
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	2 cut(s)	39, 159
BslFI	GGGAC	1 cut(s)	220
BsmAI	GTCTC	2 cut(s)	221, 305
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	220
BsmI	GAATGC	2 cut(s)	170, 466
BsnI	GGCC	2 cut(s)	38, 137
BsoBI	CYCGRG	1 cut(s)	176
Bsp1407I	TGTACA	1 cut(s)	522
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	2 cut(s)	38, 137
BspCNI	CTCAG	3 cut(s)	85, 112, 118
BspLI	GGNNCC	1 cut(s)	43
BsrGI	TGTACA	1 cut(s)	522
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	3 cut(s)	26, 232, 316
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstAUI	TGTACA	1 cut(s)	522
BstDEI	CTNAG	3 cut(s)	72, 99, 126
BstF5I	GGATG	1 cut(s)	417
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	2 cut(s)	221, 305
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 354, 470
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	158, 357
BstSFI	CTRYAG	1 cut(s)	368
BstV1I	GCAGC	2 cut(s)	105, 482
BstV2I	GAAGAC	2 cut(s)	189, 419
BsuRI	GGCC	2 cut(s)	38, 137
BtsCI	GGATG	1 cut(s)	417
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	523
CviJI	RGCY	7 cut(s)	5, 38, 44, 76, 118, 137, 539
CviKI_1	RGCY	7 cut(s)	5, 38, 44, 76, 118, 137, 539
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	3 cut(s)	72, 99, 126
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	357
EcoRV	GATATC	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	221
FaiI	YATR	3 cut(s)	393, 407, 501
FaqI	GGGAC	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	6, 119, 471
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	3 cut(s)	6, 119, 471
GluI	GCNGC	3 cut(s)	6, 119, 471
HaeIII	GGCC	2 cut(s)	38, 137
HapII	CCGG	2 cut(s)	39, 159
HinfI	GANTC	4 cut(s)	95, 155, 255, 424
HpaII	CCGG	2 cut(s)	39, 159
HphI	GGTGA	2 cut(s)	256, 317
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	3 cut(s)	26, 232, 316
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 354, 470
HpyF3I	CTNAG	3 cut(s)	72, 99, 126
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	3 cut(s)	41, 55, 483
LpnPI	CCDG	7 cut(s)	52, 172, 184, 344, 356, 371, 434
Lsp1109I	GCAGC	2 cut(s)	105, 482
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	4 cut(s)	194, 419, 506, 517
MfeI	CAATTG	1 cut(s)	476
MluCI	AATT	1 cut(s)	476
MlyI	GAGTC	2 cut(s)	249, 433
MnlI	CCTC	5 cut(s)	64, 87, 172, 272, 329
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	2 cut(s)	330, 478
MspI	CCGG	2 cut(s)	39, 159
MspR9I	CCNGG	2 cut(s)	160, 359
MunI	CAATTG	1 cut(s)	476
Mva1269I	GAATGC	2 cut(s)	170, 466
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	73, 354, 470
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	337
NlaIV	GGNNCC	1 cut(s)	43
OliI	CACNNNNGTG	1 cut(s)	478
PctI	GAATGC	2 cut(s)	170, 466
PfeI	GAWTC	2 cut(s)	95, 155
PfoI	TCCNGGA	1 cut(s)	158
PkrI	GCNGC	3 cut(s)	7, 120, 472
PleI	GAGTC	2 cut(s)	249, 432
PpsI	GAGTC	2 cut(s)	249, 432
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	2 cut(s)	330, 478
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	3 cut(s)	6, 119, 471
Sau3AI	GATC	1 cut(s)	337
SchI	GAGTC	2 cut(s)	249, 433
ScrFI	CCNGG	2 cut(s)	160, 359
SetI	ASST	2 cut(s)	269, 303
SfcI	CTRYAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	2 cut(s)	330, 478
Sse9I	AATT	1 cut(s)	476
SsiI	CCGC	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	158, 357
TaaI	ACNGT	3 cut(s)	26, 232, 316
TaqI	TCGA	2 cut(s)	56, 336
TasI	AATT	1 cut(s)	476
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	2 cut(s)	95, 155
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	3 cut(s)	5, 118, 470
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.