Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Forward (+)

54037936 .. 54038961

Gene Structure 1026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034762

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTTCTGTTTCTGATCTTGATTTATATGCTTACAACAGGCTTCAATCTGAGTTGATGGCGTTAATGATGGGTGGAGATTCGGGGATATCTGCATTCCCTGAAGAAGACAACATATTCTGCTGGAAAGGGACCATCAATGGAAGCAAAGAGACAGTTTTCGAAGGGACTCAATACAGATTGTCCCTTTCTTTCCCCAATGACTATCCCTTTAAGCCTCCCAAGGTCAAGTTCGAGTCTTTCTGCTTTCACCCCAACGTCGATGTCCGTGGCCACATTTGCTTGGATATTCTTCAGGATAAATGGTCTTCGGCTTATGATGTGAGAACCATCCTCTTATCGATCCAGAGTCTTCTCGGAGAACCAAACACTAGCTCACCTTTGAACCCCCAAGCAGCACAACTGTGGAGCAATCAAGAAGAATATAGGAAGATGGTGGAGAAGTTGTACAAGCCTCCAAGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

156

Amino Acids

17.58

Weight (kDa)

4.99

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	14 - 148	5.7e-48	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	1 cut(s)	271
AcuI	CTGAAG	2 cut(s)	123, 278
AfaI	GTAC	1 cut(s)	449
AgsI	TTSAA	2 cut(s)	47, 385
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AleI	CACNNNNGTG	1 cut(s)	403
AluBI	AGCT	1 cut(s)	375
AluI	AGCT	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	337
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	242, 369
AsuII	TTCGAA	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	132
BalI	TGGCCA	1 cut(s)	273
BbsI	GAAGAC	3 cut(s)	114, 300, 344
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	5 cut(s)	52, 64, 143, 338, 427
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	372
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	133
BpiI	GAAGAC	3 cut(s)	114, 300, 344
Bpu14I	TTCGAA	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	341
BsaJI	CCNNGG	2 cut(s)	222, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
BseCI	ATCGAT	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	222, 268
BseGI	GGATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	341
BslFI	GGGAC	3 cut(s)	145, 169, 181
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	3 cut(s)	145, 169, 181
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	16, 342
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	341
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	337
BspT104I	TTCGAA	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	447
BssECI	CCNNGG	2 cut(s)	222, 268
BssMI	GATC	2 cut(s)	16, 342
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	157, 405
BstAUI	TGTACA	1 cut(s)	447
BstBI	TTCGAA	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	2 cut(s)	19, 345
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	16, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	407
BstV2I	GAAGAC	3 cut(s)	114, 300, 344
Bsu15I	ATCGAT	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	448
CviJI	RGCY	7 cut(s)	5, 43, 217, 273, 314, 375, 454
CviKI_1	RGCY	7 cut(s)	5, 43, 217, 273, 314, 375, 454
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	2 cut(s)	18, 344
DpnII	GATC	2 cut(s)	16, 342
EaeI	YGGCCR	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	2 cut(s)	123, 278
EcoRV	GATATC	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaiI	YATR	5 cut(s)	28, 30, 116, 318, 426
FaqI	GGGAC	3 cut(s)	145, 169, 181
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	273
HinfI	GANTC	4 cut(s)	80, 169, 236, 349
HphI	GGTGA	2 cut(s)	242, 369
Hpy188I	TCNGA	3 cut(s)	16, 52, 359
Hpy188III	TCNNGA	4 cut(s)	20, 296, 346, 416
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	157, 405
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	16, 342
LmnI	GCTCC	1 cut(s)	408
LpnPI	CCDG	5 cut(s)	25, 109, 114, 281, 359
Lsp1109I	GCAGC	1 cut(s)	407
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	1 cut(s)	258
MalI	GATC	2 cut(s)	18, 344
MboI	GATC	2 cut(s)	16, 342
MboII	GAAGA	7 cut(s)	116, 119, 284, 300, 344, 431, 442
MlsI	TGGCCA	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	273
MlyI	GAGTC	3 cut(s)	163, 245, 358
MnlI	CCTC	3 cut(s)	228, 344, 465
Mox20I	TGGCCA	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	2 cut(s)	65, 213
MslI	CAYNNNNRTG	1 cut(s)	403
Msp20I	TGGCCA	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	279
NdeII	GATC	2 cut(s)	16, 342
NlaIV	GGNNCC	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	162
OliI	CACNNNNGTG	1 cut(s)	403
PctI	GAATGC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	3 cut(s)	163, 244, 357
PpsI	GAGTC	3 cut(s)	163, 244, 357
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	132
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	65, 213
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	16, 342
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	3 cut(s)	163, 245, 358
SetI	ASST	4 cut(s)	228, 261, 377, 382
SfuI	TTCGAA	1 cut(s)	162
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	403
SspMI	CTAG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	157, 405
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	4 cut(s)	162, 234, 261, 341
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	65, 213
Tru9I	TTAA	2 cut(s)	65, 213
TseI	GCWGC	1 cut(s)	395
TspGWI	ACGGA	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	132
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.