Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004501

Physical Location & Seq

Genomic Coordinates Reverse (-)

7002697 .. 7004508

Gene Structure 1812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCGACGGTTAATGGGTACACAGGGAATACTCCGGCGGCGACTACACCGGCAGCCACCGGATCAAAGCAATCTGCTCCTCCGACTAAGACCGTCGATAGCCACTCCGTTCTAAAAAGGCTGCAATCTGAACTAATGGGATTGATGATGGGAGCTGATCCGGGGATATCTGCGTTTCCAGAGGAAGACAACATATTTTGCTGGAAAGGAACAATTACAGGAAGCAAAGATACTGTGTTCGAAGGAACTGAGTACAGACTCTCACTCACTTTCTCTAACGATTATCCTTTTAAGTCTCCCAAAGTTAAGTTTGAGACATGCTGCTTCCACCCCAATGTGGATCTCTATGGCAATATTTGCTTGGACATTCTTCAGGATAAATGGTCATCTGCTTATGATGTGAGGACGATATTACTCTCAATTCAAAGCCTTCTCGGAGAACCGAACATCAGCTCACCATTGAACAATCAAGCGGCTCAGCTTTGGAGCAATCAAGAAGAGTACAGGAAGATGGTTGAGAAGCTCTACAAGCCTTTAAACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

181

Amino Acids

20.0

Weight (kDa)

5.39

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	7 - 129	2.4e-45	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50490 AT3G20060 AT3G20060
fragaria_vesca	FvH4_2g11955 FvH4_2g11955 FvH4_2g11955 FvH4_2g12020 FvH4_2g12020 FvH4_2g12020 FvH4_3g28320 FvH4_7g27940
malus_domestica	MD03G1170200.v1.1 MD11G1187700.v1.1
prunus_persica	Prupe.4G256900_v2.0.a1
pyrus_communis	pycom03g12670 pycom11g16440
rosa_chinensis	RchiOBHm_Chr5g0051201
rosa_laevigata	RLG00000026701 RLG00000034762
rosa_multiflora	Rmu_sc0027433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029160 Rroxscaffold_4G00283120
rosa_rugosa	Rorug01G0386800 Rorug01G0386900 Rorug01G0387000 Rorug05G0266600
rosa_samantha	Rh1AG397800 Rh5AG338900 Rh5BG348800 Rh5DG361700
rosa_wichuraiana	Rw1G035300 Rw5G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	38, 473
AclWI	GGATC	3 cut(s)	70, 152, 348
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	3 cut(s)	20, 254, 503
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	425, 463
AluBI	AGCT	4 cut(s)	155, 453, 481, 523
AluI	AGCT	4 cut(s)	155, 453, 481, 523
Alw26I	GTCTC	2 cut(s)	300, 308
AlwI	GGATC	3 cut(s)	70, 152, 348
ApeKI	GCWGC	3 cut(s)	53, 121, 321
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	447
AsuII	TTCGAA	1 cut(s)	240
BarI	GAAGNNNNNNTAC	2 cut(s)	214, 246
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	65, 108, 308
BccI	CCATC	2 cut(s)	142, 505
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	300, 308
BisI	GCNGC	5 cut(s)	39, 54, 122, 322, 474
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	5 cut(s)	40, 55, 123, 323, 475
Bme1390I	CCNGG	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse118I	RCCGGY	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	240, 491
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	3 cut(s)	65, 108, 308
BsiSI	CCGG	4 cut(s)	35, 50, 60, 161
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	300, 308
Bsp119I	TTCGAA	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	62, 157, 340
Bsp1720I	GCTNAGC	1 cut(s)	477
BspACI	CCGC	2 cut(s)	38, 473
BspCNI	CTCAG	2 cut(s)	241, 490
BspPI	GGATC	3 cut(s)	70, 152, 348
BspT104I	TTCGAA	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	3 cut(s)	62, 157, 340
Bst4CI	ACNGT	3 cut(s)	10, 94, 235
Bst6I	CTCTTC	1 cut(s)	492
BstAPI	GCANNNNNTGC	1 cut(s)	357
BstBI	TTCGAA	1 cut(s)	240
BstDEI	CTNAG	3 cut(s)	87, 249, 477
BstKTI	GATC	3 cut(s)	65, 160, 343
BstMAI	GTCTC	2 cut(s)	300, 308
BstMBI	GATC	3 cut(s)	62, 157, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	357, 529
BstNSI	RCATGY	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	65, 108, 308
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	49
Csp6I	GTAC	3 cut(s)	19, 253, 502
CviAII	CATG	2 cut(s)	318, 543
CviQI	GTAC	3 cut(s)	19, 253, 502
DdeI	CTNAG	3 cut(s)	87, 249, 477
DpnI	GATC	3 cut(s)	64, 159, 342
DpnII	GATC	3 cut(s)	62, 157, 340
DraI	TTTAAA	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	356
EcoRV	GATATC	1 cut(s)	168
FaeI	CATG	2 cut(s)	321, 546
FaiI	YATR	5 cut(s)	194, 319, 348, 396, 544
FatI	CATG	2 cut(s)	317, 542
Fnu4HI	GCNGC	5 cut(s)	39, 54, 122, 322, 474
Fsp4HI	GCNGC	5 cut(s)	39, 54, 122, 322, 474
GluI	GCNGC	5 cut(s)	39, 54, 122, 322, 474
HapII	CCGG	4 cut(s)	35, 50, 60, 161
Hin1II	CATG	2 cut(s)	321, 546
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	4 cut(s)	35, 50, 60, 161
HphI	GGTGA	1 cut(s)	447
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	3 cut(s)	84, 130, 437
Hpy188III	TCNNGA	3 cut(s)	179, 374, 494
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	2 cut(s)	10, 98
HpyAV	CCTTC	2 cut(s)	236, 440
HpyCH4III	ACNGT	3 cut(s)	10, 94, 235
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	357, 529
HpyF3I	CTNAG	3 cut(s)	87, 249, 477
Hsp92II	CATG	2 cut(s)	321, 546
Kzo9I	GATC	3 cut(s)	62, 157, 340
LmnI	GCTCC	3 cut(s)	82, 152, 486
Lsp1109I	GCAGC	3 cut(s)	65, 108, 308
MalI	GATC	3 cut(s)	64, 159, 342
MboI	GATC	3 cut(s)	62, 157, 340
MboII	GAAGA	4 cut(s)	197, 362, 509, 520
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	2 cut(s)	213, 420
MlyI	GAGTC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	3 cut(s)	90, 175, 396
MseI	TTAA	4 cut(s)	12, 291, 306, 536
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	4 cut(s)	35, 50, 60, 161
MspR9I	CCNGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	357, 529
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	3 cut(s)	62, 157, 340
NlaIII	CATG	2 cut(s)	321, 546
NspI	RCATGY	1 cut(s)	321
NspV	TTCGAA	1 cut(s)	240
PkrI	GCNGC	5 cut(s)	40, 55, 123, 323, 475
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	3 cut(s)	20, 254, 503
RsaNI	GTAC	3 cut(s)	19, 253, 502
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	4 cut(s)	12, 291, 306, 536
SatI	GCNGC	5 cut(s)	39, 54, 122, 322, 474
Sau3AI	GATC	3 cut(s)	62, 157, 340
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	4 cut(s)	157, 455, 483, 525
SfuI	TTCGAA	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	2 cut(s)	213, 420
SsiI	CCGC	2 cut(s)	38, 473
SspI	AATATT	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	3 cut(s)	10, 94, 235
TaqI	TCGA	2 cut(s)	96, 240
TasI	AATT	2 cut(s)	213, 420
TatI	WGTACW	2 cut(s)	252, 501
TauI	GCSGC	2 cut(s)	41, 476
Tru1I	TTAA	4 cut(s)	12, 291, 306, 536
Tru9I	TTAA	4 cut(s)	12, 291, 306, 536
TseI	GCWGC	3 cut(s)	53, 121, 321
TspGWI	ACGGA	1 cut(s)	97
XceI	RCATGY	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.