AT1G53280

Protein DJ-1 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
19864726 .. 19867389
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53280.2

Sequence Viewer

Length: 1317 bp
ATGGCGTCGTCGTCGTTGTGTCATCGCTATTTTAACAAAATCACTGTCACTCCCTTTTTTAACACTAAAAAACTCCATCACTATTCTCCGAGACGAATCTCTCTTCGTGTAAATCGACGATCCTTCTCTATCTCTGCAACTATGTCTTCATCTACTAAGAAGGTTTTGATTCCTGTTGCTCATGGTACGGAGCCGTTTGAAGCGGTGGTTATGATCGATGTGCTACGGCGAGGCGGAGCGGATGTTACGGTGGCTTCCGTTGAGAATCAGGTCGGCGTTGATGCTTGCCATGGAATCAAAATGGTCGCTGATACTCTTCTCTCTGATATCACCGACTCGGTTTTCGACCTTATTATGCTCCCTGGAGGACTTCCTGGTGGTGAGACTCTTAAGAATTGTAAACCTTTAGAGAAGATGGTGAAGAAGCAAGACACTGATGGACGACTTAACGCTGCTATCTGTTGTGCGCCGGCGTTGGCGTTTGGTACTTGGGGACTACTAGAGGGTAAAAAAGCTACATGTTACCCGGTTTTTATGGAGAAACTAGCGGCTTGTGCGACAGCTGTTGAGTCAAGAGTGGAAATTGATGGGAAGATAGTGACCAGTAGAGGGCCTGGAACTACCATGGAATTCTCTGTCACGCTTGTGGAGCAACTTCTTGGGAAAGAGAAAGCTGTTGAAGTCTCTGGCCCCTTGGTGATGCGTCCCAACCCTGGTGATGAGTATACTATTACTGAGCTTAACCAAGTCAGCTGGTCATTCGAGGGTACCCCACAGATTCTTGTACCCATTGCAGATGGCTCGGAGGAAATGGAAGCTGTTGCTATCATTGATGTCCTGAAGCGGGCAAAAGCAAATGTTGTCGTAGCTGCGCTTGGTAACAGTTTGGAAGTGGTAGCATCTCGGAAAGTCAAGCTGGTGGCAGATGTGCTTCTCGACGAGGCTGAAAAGAATTCGTACGATCTGATTGTGTTGCCTGGTGGTCTCGGCGGTGCTGAAGCATTTGCAAGTTCGGAGAAGCTAGTGAATATGTTAAAGAAGCAGGCGGAATCAAACAAACCATATGGAGCAATTTGTGCCTCTCCTGCTCTGGTGTTTGAGCCACATGGTTTACTCAAGGGTAAGAAGGCAACAGCGTTTCCAGCAATGTGCAGCAAACTGACGGACCAGAGTCACATCGAGCATCGAGTCTTGGTGGACGGCAATCTCATAACGAGCAGGGGTCCAGGAACCTCATTGGAGTTTGCACTTGCAATTGTAGAGAAGTTTTACGGGCGCGAGAAAGGACTTCAGCTCTCAAAGGCAACACTTGTGTAA

Protein Analysis

438

Amino Acids

46.99

Weight (kDa)

7.99

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 53 - 218 1.7e-41 DJ-1/PfpI family
DJ-1_PfpI PF01965 259 - 375 4.2e-27 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 767
AccB1I GGYRCC 1 cut(s) 767
AccBSI CCGCTC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 725
AccII CGCG 1 cut(s) 1278
AciI CCGC 7 cut(s) 203, 234, 239, 548, 844, 990, 1046
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 2 cut(s) 629, 952
AcuI CTGAAG 3 cut(s) 860, 1017, 1274
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 5 cut(s) 187, 487, 769, 786, 959
AfiI CCNNNNNNNGG 3 cut(s) 609, 713, 844
AflII CTTAAG 1 cut(s) 389
AflIII ACRYGT 1 cut(s) 518
AgsI TTSAA 2 cut(s) 200, 680
AjnI CCWGG 6 cut(s) 361, 373, 613, 712, 976, 1225
AleI CACNNNNGTG 1 cut(s) 644
Alw26I GTCTC 4 cut(s) 85, 377, 688, 989
AlwI GGATC 1 cut(s) 114
AoxI GGCC 2 cut(s) 611, 688
ApeKI GCWGC 3 cut(s) 452, 869, 1152
ApoI RAATTY 2 cut(s) 629, 952
ArsI GACNNNNNNTTYG 4 cut(s) 30, 62, 326, 358
Asp718I GGTACC 1 cut(s) 767
AspLEI GCGC 3 cut(s) 469, 874, 1278
AspS9I GGNCC 4 cut(s) 611, 689, 1165, 1223
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 5 cut(s) 322, 392, 430, 709, 728
AvaII GGWCC 2 cut(s) 1165, 1223
BanI GGYRCC 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 439, 856, 1164
BccI CCATC 5 cut(s) 84, 409, 431, 581, 791
BceAI ACGGC 3 cut(s) 178, 242, 1216
BcgI CGANNNNNNTGC 2 cut(s) 783, 817
BciT130I CCWGG 6 cut(s) 363, 375, 615, 714, 978, 1227
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 4 cut(s) 85, 377, 688, 989
BfaI CTAG 3 cut(s) 500, 545, 1022
BfrI CTTAAG 1 cut(s) 389
BisI GCNGC 4 cut(s) 453, 549, 870, 1153
BlsI GCNGC 4 cut(s) 454, 550, 871, 1154
Bme1390I CCNGG 7 cut(s) 363, 375, 527, 615, 714, 978, 1227
Bme18I GGWCC 2 cut(s) 1165, 1223
BmgT120I GGNCC 4 cut(s) 611, 689, 1165, 1223
BmiI GGNNCC 5 cut(s) 192, 691, 769, 1224, 1231
BmrFI CCNGG 7 cut(s) 363, 375, 527, 615, 714, 978, 1227
BmsI GCATC 4 cut(s) 271, 690, 908, 1192
BoxI GACNNNNGTC 1 cut(s) 1170
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 1100
BpuMI CCSGG 1 cut(s) 527
Bsa29I ATCGAT 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 989
BsaJI CCNNGG 5 cut(s) 289, 361, 624, 693, 712
BsaXI ACNNNNNCTCC 4 cut(s) 34, 64, 228, 258
Bsc4I CCNNNNNNNGG 3 cut(s) 609, 713, 844
Bse118I RCCGGY 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 603
Bse3DI GCAATG 2 cut(s) 789, 1152
BseBI CCWGG 6 cut(s) 363, 375, 615, 714, 978, 1227
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 5 cut(s) 289, 361, 624, 693, 712
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 3 cut(s) 609, 713, 844
BseMI GCAATG 2 cut(s) 789, 1152
BseMII CTCAG 1 cut(s) 726
BseNI ACTGG 1 cut(s) 603
BseXI GCAGC 3 cut(s) 439, 856, 1164
BsgI GTGCAG 1 cut(s) 1171
Bsh1236I CGCG 1 cut(s) 1278
BshFI GGCC 2 cut(s) 613, 690
BshNI GGYRCC 1 cut(s) 767
BshVI ATCGAT 1 cut(s) 216
BsiSI CCGG 2 cut(s) 470, 527
BsiWI CGTACG 1 cut(s) 957
BslFI GGGAC 2 cut(s) 507, 690
BslI CCNNNNNNNGG 3 cut(s) 609, 713, 844
BsmAI GTCTC 4 cut(s) 85, 377, 688, 989
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 2 cut(s) 507, 690
BsnI GGCC 2 cut(s) 613, 690
Bso31I GGTCTC 1 cut(s) 989
Bsp143I GATC 3 cut(s) 119, 213, 961
Bsp19I CCATGG 2 cut(s) 289, 624
BspACI CCGC 7 cut(s) 203, 234, 239, 548, 844, 990, 1046
BspANI GGCC 2 cut(s) 613, 690
BspCNI CTCAG 1 cut(s) 727
BspDI ATCGAT 1 cut(s) 216
BspFNI CGCG 1 cut(s) 1278
BspLI GGNNCC 5 cut(s) 192, 691, 769, 1224, 1231
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 767
BspTI CTTAAG 1 cut(s) 389
BspTNI GGTCTC 1 cut(s) 989
BsrBI CCGCTC 1 cut(s) 239
BsrDI GCAATG 2 cut(s) 789, 1152
BsrFI RCCGGY 1 cut(s) 469
BsrI ACTGG 1 cut(s) 603
BssAI RCCGGY 1 cut(s) 469
BssECI CCNNGG 5 cut(s) 289, 361, 624, 693, 712
BssMI GATC 3 cut(s) 119, 213, 961
BssNAI GTATAC 1 cut(s) 726
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 289, 624, 693
Bst1107I GTATAC 1 cut(s) 726
Bst2UI CCWGG 6 cut(s) 363, 375, 615, 714, 978, 1227
Bst4CI ACNGT 3 cut(s) 46, 250, 884
Bst6I CTCTTC 2 cut(s) 108, 321
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 389
BstAPI GCANNNNNTGC 1 cut(s) 1076
BstC8I GCNNGC 4 cut(s) 286, 471, 846, 1044
BstDEI CTNAG 2 cut(s) 156, 735
BstDSI CCRYGG 2 cut(s) 289, 624
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 1278
BstHHI GCGC 3 cut(s) 469, 874, 1278
BstKTI GATC 3 cut(s) 122, 216, 964
BstMAI GTCTC 4 cut(s) 85, 377, 688, 989
BstMBI GATC 3 cut(s) 119, 213, 961
BstMWI GCNNNNNNNGC 5 cut(s) 554, 649, 1076, 1085, 1142
BstNI CCWGG 6 cut(s) 363, 375, 615, 714, 978, 1227
BstNSI RCATGY 1 cut(s) 522
BstPAI GACNNNNGTC 1 cut(s) 1170
BstSCI CCNGG 7 cut(s) 361, 373, 525, 613, 712, 976, 1225
BstUI CGCG 1 cut(s) 1278
BstV1I GCAGC 3 cut(s) 439, 856, 1164
BstV2I GAAGAC 1 cut(s) 138
BstZ17I GTATAC 1 cut(s) 726
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 2 cut(s) 613, 690
BsuTUI ATCGAT 1 cut(s) 216
BtgI CCRYGG 2 cut(s) 289, 624
BtgZI GCGATG 1 cut(s) 8
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 42, 432
Cac8I GCNNGC 4 cut(s) 286, 471, 846, 1044
CfoI GCGC 3 cut(s) 469, 874, 1278
Cfr10I RCCGGY 1 cut(s) 469
Cfr13I GGNCC 4 cut(s) 611, 689, 1165, 1223
ClaI ATCGAT 1 cut(s) 216
CseI GACGC 1 cut(s) 692
Csp6I GTAC 5 cut(s) 186, 486, 768, 785, 958
CviAII CATG 5 cut(s) 182, 290, 519, 625, 1106
CviQI GTAC 5 cut(s) 186, 486, 768, 785, 958
DdeI CTNAG 2 cut(s) 156, 735
DpnI GATC 3 cut(s) 121, 215, 963
DpnII GATC 3 cut(s) 119, 213, 961
Eam1104I CTCTTC 2 cut(s) 108, 321
EarI CTCTTC 2 cut(s) 108, 321
EciI GGCGGA 2 cut(s) 249, 1061
Eco130I CCWWGG 3 cut(s) 289, 624, 693
Eco31I GGTCTC 1 cut(s) 989
Eco32I GATATC 1 cut(s) 328
Eco47I GGWCC 2 cut(s) 1165, 1223
Eco57I CTGAAG 3 cut(s) 860, 1017, 1274
EcoO109I RGGNCCY 1 cut(s) 611
EcoRI GAATTC 2 cut(s) 629, 952
EcoRII CCWGG 6 cut(s) 361, 373, 613, 712, 976, 1225
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 3 cut(s) 289, 624, 693
ErhI CCWWGG 3 cut(s) 289, 624, 693
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 5 cut(s) 185, 293, 522, 628, 1109
FaqI GGGAC 2 cut(s) 507, 690
FatI CATG 5 cut(s) 181, 289, 518, 624, 1105
FauI CCCGC 1 cut(s) 837
FauNDI CATATG 1 cut(s) 1063
FblI GTMKAC 1 cut(s) 725
Fnu4HI GCNGC 4 cut(s) 453, 549, 870, 1153
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 4 cut(s) 453, 549, 870, 1153
FspBI CTAG 3 cut(s) 500, 545, 1022
GlaI GCGC 3 cut(s) 468, 873, 1277
GluI GCNGC 4 cut(s) 453, 549, 870, 1153
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 2 cut(s) 613, 690
HapII CCGG 2 cut(s) 470, 527
HgaI GACGC 1 cut(s) 692
HhaI GCGC 3 cut(s) 469, 874, 1278
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 185, 293, 522, 628, 1109
Hin6I GCGC 3 cut(s) 467, 872, 1276
HinP1I GCGC 3 cut(s) 467, 872, 1276
HpaII CCGG 2 cut(s) 470, 527
HphI GGTGA 5 cut(s) 322, 392, 430, 709, 728
Hpy166II GTNNAC 4 cut(s) 401, 726, 1112, 1198
Hpy188I TCNGA 6 cut(s) 90, 325, 805, 906, 966, 1015
Hpy188III TCNNGA 3 cut(s) 573, 838, 935
Hpy8I GTNNAC 4 cut(s) 401, 726, 1112, 1198
Hpy99I CGWCG 5 cut(s) 10, 13, 16, 120, 941
HpyAV CCTTC 3 cut(s) 133, 154, 1120
HpyCH4III ACNGT 3 cut(s) 46, 250, 884
HpyCH4V TGCA 6 cut(s) 137, 794, 1007, 1152, 1247, 1253
HpyF10VI GCNNNNNNNGC 5 cut(s) 554, 649, 1076, 1085, 1142
HpyF3I CTNAG 2 cut(s) 156, 735
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 185, 293, 522, 628, 1109
HspAI GCGC 3 cut(s) 467, 872, 1276
KpnI GGTACC 1 cut(s) 771
KroI GCCGGC 1 cut(s) 469
KroNI GCCGGC 1 cut(s) 471
Kzo9I GATC 3 cut(s) 119, 213, 961
LmnI GCTCC 5 cut(s) 190, 236, 363, 649, 1067
Lsp1109I GCAGC 3 cut(s) 439, 856, 1164
LweI GCATC 4 cut(s) 271, 690, 908, 1192
MaeI CTAG 3 cut(s) 500, 545, 1022
MaeIII GTNAC 7 cut(s) 46, 244, 521, 598, 637, 878, 1172
MalI GATC 3 cut(s) 121, 215, 963
MbiI CCGCTC 1 cut(s) 239
MboI GATC 3 cut(s) 119, 213, 961
MboII GAAGA 6 cut(s) 95, 138, 308, 424, 433, 604
MfeI CAATTG 1 cut(s) 1254
MluCI AATT 6 cut(s) 394, 582, 629, 952, 1071, 1254
MlyI GAGTC 5 cut(s) 329, 379, 578, 1180, 1197
MnlI CCTC 9 cut(s) 224, 359, 496, 602, 757, 799, 934, 1090, 1243
MreI CGCCGGCG 1 cut(s) 469
MroNI GCCGGC 1 cut(s) 469
MseI TTAA 6 cut(s) 33, 60, 390, 447, 741, 1034
MslI CAYNNNNRTG 1 cut(s) 644
MspA1I CMGCKG 2 cut(s) 563, 753
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 2 cut(s) 470, 527
MspR9I CCNGG 7 cut(s) 363, 375, 527, 615, 714, 978, 1227
MunI CAATTG 1 cut(s) 1254
MvaI CCWGG 6 cut(s) 363, 375, 615, 714, 978, 1227
MvnI CGCG 1 cut(s) 1278
MwoI GCNNNNNNNGC 5 cut(s) 554, 649, 1076, 1085, 1142
NaeI GCCGGC 1 cut(s) 471
NciI CCSGG 1 cut(s) 527
NcoI CCATGG 2 cut(s) 289, 624
NdeI CATATG 1 cut(s) 1063
NdeII GATC 3 cut(s) 119, 213, 961
NgoMIV GCCGGC 1 cut(s) 469
NlaIII CATG 5 cut(s) 185, 293, 522, 628, 1109
NlaIV GGNNCC 5 cut(s) 192, 691, 769, 1224, 1231
NmeAIII GCCGAG 1 cut(s) 966
NmuCI GTSAC 4 cut(s) 46, 598, 637, 1172
NspI RCATGY 1 cut(s) 522
OliI CACNNNNGTG 1 cut(s) 644
PciI ACATGT 1 cut(s) 518
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PdiI GCCGGC 1 cut(s) 471
PfeI GAWTC 6 cut(s) 96, 169, 265, 294, 778, 1049
Pfl23II CGTACG 1 cut(s) 957
PfoI TCCNGGA 1 cut(s) 1225
PkrI GCNGC 4 cut(s) 454, 550, 871, 1154
PleI GAGTC 5 cut(s) 329, 379, 577, 1179, 1196
PpsI GAGTC 5 cut(s) 329, 379, 577, 1179, 1196
PscI ACATGT 1 cut(s) 518
PshAI GACNNNNGTC 1 cut(s) 1170
Psp6I CCWGG 6 cut(s) 361, 373, 613, 712, 976, 1225
PspGI CCWGG 6 cut(s) 361, 373, 613, 712, 976, 1225
PspLI CGTACG 1 cut(s) 957
PspN4I GGNNCC 5 cut(s) 192, 691, 769, 1224, 1231
PspPI GGNCC 4 cut(s) 611, 689, 1165, 1223
PvuII CAGCTG 2 cut(s) 563, 753
RsaI GTAC 5 cut(s) 187, 487, 769, 786, 959
RsaNI GTAC 5 cut(s) 186, 486, 768, 785, 958
RseI CAYNNNNRTG 1 cut(s) 644
SaqAI TTAA 6 cut(s) 33, 60, 390, 447, 741, 1034
SatI GCNGC 4 cut(s) 453, 549, 870, 1153
Sau3AI GATC 3 cut(s) 119, 213, 961
Sau96I GGNCC 4 cut(s) 611, 689, 1165, 1223
SchI GAGTC 5 cut(s) 329, 379, 578, 1180, 1197
ScrFI CCNGG 7 cut(s) 363, 375, 527, 615, 714, 978, 1227
SfaNI GCATC 4 cut(s) 271, 690, 908, 1192
SgrAI CRCCGGYG 1 cut(s) 469
SinI GGWCC 2 cut(s) 1165, 1223
SmiMI CAYNNNNRTG 1 cut(s) 644
SmlI CTYRAG 2 cut(s) 389, 1115
SmoI CTYRAG 2 cut(s) 389, 1115
Sse9I AATT 6 cut(s) 394, 582, 629, 952, 1071, 1254
SsiI CCGC 7 cut(s) 203, 234, 239, 548, 844, 990, 1046
SspMI CTAG 3 cut(s) 500, 545, 1022
StyD4I CCNGG 7 cut(s) 361, 373, 525, 613, 712, 976, 1225
StyI CCWWGG 3 cut(s) 289, 624, 693
TaaI ACNGT 3 cut(s) 46, 250, 884
TaqI TCGA 7 cut(s) 115, 216, 345, 762, 936, 1179, 1186
TasI AATT 6 cut(s) 394, 582, 629, 952, 1071, 1254
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 6 cut(s) 96, 169, 265, 294, 778, 1049
Tru1I TTAA 6 cut(s) 33, 60, 390, 447, 741, 1034
Tru9I TTAA 6 cut(s) 33, 60, 390, 447, 741, 1034
TscAI CASTG 2 cut(s) 49, 439
TseFI GTSAC 4 cut(s) 46, 598, 637, 1172
TseI GCWGC 3 cut(s) 452, 869, 1152
Tsp45I GTSAC 4 cut(s) 46, 598, 637, 1172
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 3 cut(s) 203, 247, 1178
TspRI CASTG 2 cut(s) 49, 439
Vha464I CTTAAG 1 cut(s) 389
VpaK11BI GGWCC 2 cut(s) 1165, 1223
XapI RAATTY 2 cut(s) 629, 952
XceI RCATGY 1 cut(s) 522
XmiI GTMKAC 1 cut(s) 725
XspI CTAG 3 cut(s) 500, 545, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.