Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007782.1

Orthogroup ID

OG0005791

Physical Location & Seq

Genomic Coordinates Reverse (-)

51517 .. 55291

Gene Structure 3775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007782.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atggcttccgcttctcccgccaagaaggttctggttccgattgcgaatggctcggagcagatggaggcggtgatcgccgtcgatgttctgcgccgagccggagctgatgtcactatggcttctgtggagaagcagctgagggttgaggcgtgtcatggggttaagatcatcgctgatgctttgatttcggactgtggccagagctcctttgatctcattactctacctggagggatgcaaggtgctaccaatcttaaaaacagtgaggtcctggaaagtctggtgaaaaagcaagctgccgatgggaagctctatgctgcaatatgtgctgcacctgtagtggcacttgagtcttggggtgtgctgaagggattgaaagcaacttgctatccatcattaatggagcaattagcagcatctagtgcaactgctgttgaatcaagagtgcagctagatggcaaagctgtgacaagtcctggacctggtactaccatagagtgtgctgttgcacttgttgagcaattgtatgggaaggagaaagctgatgaagtttctggtcccctggtgatgcgttccaaccatggggatgaatatatcataactgagcgaaacccaatgaagtggactttcactgattccccaaagattcttgtaccaatagctaatggtacagaggaaatggaagctataatgatcattgatattctccgacgagccaaagcaactgttgtagtggcctctgtagaagataagctagacattattgcttctcgcaaagttaagctggaagcggatgtgctcctggatgaagcggccaaactttcgtatgacctaatagttttgcctggtggacttggcggtgctcaagcttttgcaaaatcagaaacacttgtgaatttgttgaaaaagcagagggaatcaaataagccttatggagctatatgtgcttcaccagctttagtctttgaaccccatggcttactcaagggaaaaaaggctactgctttcccagcaatgtgcgacaagctgtcagataggagtgaaattgaaaatagggtattggttgatggtaacctcatcaccagcagggggccaggaacttccatggagtttgctctaggaattgttgagaagttttttggccgcgaaaaagcaatagagcttgcaaaagttctggtttttgttcatccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

397

Amino Acids

42.19

Weight (kDa)

5.79

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53280 AT1G53280 AT3G14990 AT3G14990 AT3G14990
fragaria_vesca	FvH4_3g18570 FvH4_3g18570 FvH4_3g18570
malus_domestica	MD03G1241000.v1.1 MD11G1260500.v1.1
prunus_persica	Prupe.4G167800_v2.0.a1 Prupe.4G167900_v2.0.a1
pyrus_communis	pycom11g22990
rosa_chinensis	RchiOBHm_Chr5g0031321 RchiOBHm_Chr5g0031331 RchiOBHm_Chr5g0031361 RchiOBHm_Chr5g0031371
rosa_laevigata	RLG00000033301
rosa_multiflora	Rmu_sc0007782.1_g000014 Rmu_sc0018148.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048960
rosa_rugosa	Rorug05G0124300 Rorug05G0124700
rosa_samantha	Rh5AG217400 Rh5BG217100 Rh5CG240700 Rh5DG222400
rosa_wichuraiana	Rw5G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1146
AciI	CCGC	7 cut(s)	9, 18, 68, 791, 812, 858, 1144
AcoI	YGGCCR	3 cut(s)	196, 813, 1141
AcsI	RAATTY	1 cut(s)	895
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	3 cut(s)	487, 654, 670
AfiI	CCNNNNNNNGG	3 cut(s)	482, 582, 1089
AgsI	TTSAA	5 cut(s)	376, 437, 904, 968, 1049
AhdI	GACNNNNNGTC	1 cut(s)	1027
AjnI	CCWGG	8 cut(s)	226, 270, 475, 481, 561, 801, 844, 1093
Alw21I	GWGCWC	3 cut(s)	206, 801, 865
AoxI	GGCC	5 cut(s)	196, 735, 813, 1091, 1141
ApeKI	GCWGC	6 cut(s)	133, 296, 317, 329, 413, 448
ApoI	RAATTY	1 cut(s)	895
AseI	ATTAAT	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	4 cut(s)	268, 479, 557, 1091
AsuHPI	GGTGA	5 cut(s)	82, 295, 577, 942, 1072
AvaII	GGWCC	3 cut(s)	268, 479, 557
BalI	TGGCCA	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	206
Bbv12I	GWGCWC	3 cut(s)	206, 801, 865
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	6 cut(s)	145, 283, 304, 316, 425, 460
BccI	CCATC	5 cut(s)	55, 296, 400, 449, 1061
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	8 cut(s)	228, 272, 477, 483, 563, 803, 846, 1095
BclI	TGATCA	1 cut(s)	693
BfaI	CTAG	4 cut(s)	420, 452, 755, 1118
BfmI	CTRYAG	2 cut(s)	336, 741
BisI	GCNGC	8 cut(s)	134, 297, 318, 330, 414, 449, 813, 1144
BlsI	GCNGC	8 cut(s)	135, 298, 319, 331, 415, 450, 814, 1145
Bme1390I	CCNGG	8 cut(s)	228, 272, 477, 483, 563, 803, 846, 1095
Bme18I	GGWCC	3 cut(s)	268, 479, 557
BmeRI	GACNNNNNGTC	1 cut(s)	1027
BmgT120I	GGNCC	4 cut(s)	268, 479, 557, 1091
BmiI	GGNNCC	3 cut(s)	36, 559, 1092
BmrFI	CCNGG	8 cut(s)	228, 272, 477, 483, 563, 803, 846, 1095
BmsI	GCATC	4 cut(s)	166, 225, 425, 558
BpmI	CTGGAG	1 cut(s)	249
Bpu10I	CCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	3 cut(s)	368, 849, 968
BsaJI	CCNNGG	4 cut(s)	561, 580, 973, 1104
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 582, 1089
Bse3DI	GCAATG	1 cut(s)	1020
BseBI	CCWGG	8 cut(s)	228, 272, 477, 483, 563, 803, 846, 1095
BseDI	CCNNGG	4 cut(s)	561, 580, 973, 1104
BseGI	GGATG	5 cut(s)	240, 592, 799, 811, 1186
BseLI	CCNNNNNNNGG	3 cut(s)	482, 582, 1089
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	2 cut(s)	128, 594
BseXI	GCAGC	6 cut(s)	145, 283, 304, 316, 425, 460
BseYI	CCCAGC	1 cut(s)	1009
BsgI	GTGCAG	2 cut(s)	315, 467
Bsh1236I	CGCG	1 cut(s)	1146
BshFI	GGCC	5 cut(s)	198, 737, 815, 1093, 1143
BsiHKAI	GWGCWC	3 cut(s)	206, 801, 865
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	3 cut(s)	482, 582, 1089
BsmFI	GGGAC	1 cut(s)	543
BsnI	GGCC	5 cut(s)	198, 737, 815, 1093, 1143
Bsp1286I	GDGCHC	3 cut(s)	206, 801, 865
Bsp143I	GATC	4 cut(s)	72, 165, 211, 693
Bsp19I	CCATGG	3 cut(s)	580, 973, 1104
BspACI	CCGC	7 cut(s)	9, 18, 68, 791, 812, 858, 1144
BspANI	GGCC	5 cut(s)	198, 737, 815, 1093, 1143
BspCNI	CTCAG	2 cut(s)	129, 595
BspFNI	CGCG	1 cut(s)	1146
BspLI	GGNNCC	3 cut(s)	36, 559, 1092
BsrDI	GCAATG	1 cut(s)	1020
BssECI	CCNNGG	4 cut(s)	561, 580, 973, 1104
BssMI	GATC	4 cut(s)	72, 165, 211, 693
BssT1I	CCWWGG	3 cut(s)	580, 973, 1104
Bst2UI	CCWGG	8 cut(s)	228, 272, 477, 483, 563, 803, 846, 1095
Bst4CI	ACNGT	3 cut(s)	194, 263, 727
BstAPI	GCANNNNNTGC	2 cut(s)	326, 422
BstC8I	GCNNGC	2 cut(s)	294, 1164
BstDEI	CTNAG	2 cut(s)	137, 603
BstDSI	CCRYGG	3 cut(s)	580, 973, 1104
BstEII	GGTNACC	1 cut(s)	1070
BstF5I	GGATG	5 cut(s)	240, 592, 799, 811, 1186
BstFNI	CGCG	1 cut(s)	1146
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	4 cut(s)	75, 168, 214, 696
BstMBI	GATC	4 cut(s)	72, 165, 211, 693
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 74, 326, 422, 944, 953, 1010
BstNI	CCWGG	8 cut(s)	228, 272, 477, 483, 563, 803, 846, 1095
BstPI	GGTNACC	1 cut(s)	1070
BstSCI	CCNGG	8 cut(s)	226, 270, 475, 481, 561, 801, 844, 1093
BstSFI	CTRYAG	2 cut(s)	336, 741
BstUI	CGCG	1 cut(s)	1146
BstV1I	GCAGC	6 cut(s)	145, 283, 304, 316, 425, 460
BstXI	CCANNNNNNTGG	1 cut(s)	621
BsuRI	GGCC	5 cut(s)	198, 737, 815, 1093, 1143
BtgI	CCRYGG	3 cut(s)	580, 973, 1104
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	5 cut(s)	240, 592, 799, 811, 1186
BtsIMutI	CAGTG	2 cut(s)	268, 630
Cac8I	GCNNGC	2 cut(s)	294, 1164
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	4 cut(s)	268, 479, 557, 1091
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	3 cut(s)	486, 653, 669
CviAII	CATG	4 cut(s)	155, 581, 974, 1105
CviQI	GTAC	3 cut(s)	486, 653, 669
DdeI	CTNAG	2 cut(s)	137, 603
DpnI	GATC	4 cut(s)	74, 167, 213, 695
DpnII	GATC	4 cut(s)	72, 165, 211, 693
DriI	GACNNNNNGTC	1 cut(s)	1027
EaeI	YGGCCR	3 cut(s)	196, 813, 1141
Eam1105I	GACNNNNNGTC	1 cut(s)	1027
Ecl136II	GAGCTC	1 cut(s)	204
Eco130I	CCWWGG	3 cut(s)	580, 973, 1104
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	3 cut(s)	268, 479, 557
Eco53kI	GAGCTC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	386
Eco91I	GGTNACC	1 cut(s)	1070
EcoICRI	GAGCTC	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	1070
EcoRII	CCWGG	8 cut(s)	226, 270, 475, 481, 561, 801, 844, 1093
EcoT14I	CCWWGG	3 cut(s)	580, 973, 1104
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	3 cut(s)	580, 973, 1104
FaeI	CATG	4 cut(s)	158, 584, 977, 1108
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	4 cut(s)	154, 580, 973, 1104
FauI	CCCGC	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	693
Fnu4HI	GCNGC	8 cut(s)	134, 297, 318, 330, 414, 449, 813, 1144
FokI	GGATG	5 cut(s)	247, 599, 806, 818, 1173
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	8 cut(s)	134, 297, 318, 330, 414, 449, 813, 1144
FspBI	CTAG	4 cut(s)	420, 452, 755, 1118
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	8 cut(s)	134, 297, 318, 330, 414, 449, 813, 1144
GsaI	CCCAGC	1 cut(s)	1013
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	5 cut(s)	198, 737, 815, 1093, 1143
HapII	CCGG	1 cut(s)	99
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	4 cut(s)	158, 584, 977, 1108
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	5 cut(s)	350, 437, 635, 646, 917
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	5 cut(s)	82, 295, 577, 942, 1072
Hpy166II	GTNNAC	2 cut(s)	624, 851
Hpy188I	TCNGA	6 cut(s)	39, 55, 190, 710, 883, 1033
Hpy188III	TCNNGA	1 cut(s)	441
Hpy8I	GTNNAC	2 cut(s)	624, 851
Hpy99I	CGWCG	2 cut(s)	83, 714
HpyAV	CCTTC	3 cut(s)	19, 361, 526
HpyCH4III	ACNGT	3 cut(s)	194, 263, 727
HpyCH4V	TGCA	8 cut(s)	238, 320, 332, 425, 448, 509, 875, 1166
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 74, 326, 422, 944, 953, 1010
HpyF3I	CTNAG	2 cut(s)	137, 603
Hsp92II	CATG	4 cut(s)	158, 584, 977, 1108
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	4 cut(s)	72, 165, 211, 693
LmnI	GCTCC	6 cut(s)	55, 101, 209, 403, 804, 935
Lsp1109I	GCAGC	6 cut(s)	145, 283, 304, 316, 425, 460
LweI	GCATC	4 cut(s)	166, 225, 425, 558
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	4 cut(s)	420, 452, 755, 1118
MaeIII	GTNAC	3 cut(s)	109, 466, 1070
MalI	GATC	4 cut(s)	74, 167, 213, 695
MboI	GATC	4 cut(s)	72, 165, 211, 693
MboII	GAAGA	1 cut(s)	758
MfeI	CAATTG	1 cut(s)	521
MhlI	GDGCHC	3 cut(s)	206, 801, 865
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	5 cut(s)	407, 521, 895, 1044, 1122
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	2 cut(s)	600, 733
MnlI	CCTC	9 cut(s)	58, 132, 139, 224, 259, 667, 748, 906, 1085
Mox20I	TGGCCA	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	4 cut(s)	162, 255, 398, 780
MslI	CAYNNNNRTG	1 cut(s)	585
Msp20I	TGGCCA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	8 cut(s)	228, 272, 477, 483, 563, 803, 846, 1095
MunI	CAATTG	1 cut(s)	521
MvaI	CCWGG	8 cut(s)	228, 272, 477, 483, 563, 803, 846, 1095
MvnI	CGCG	1 cut(s)	1146
MwoI	GCNNNNNNNGC	7 cut(s)	17, 74, 326, 422, 944, 953, 1010
NcoI	CCATGG	3 cut(s)	580, 973, 1104
NdeII	GATC	4 cut(s)	72, 165, 211, 693
NlaIII	CATG	4 cut(s)	158, 584, 977, 1108
NlaIV	GGNNCC	3 cut(s)	36, 559, 1092
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	2 cut(s)	109, 466
PfeI	GAWTC	4 cut(s)	437, 635, 646, 917
PfoI	TCCNGGA	3 cut(s)	270, 475, 801
PkrI	GCNGC	8 cut(s)	135, 298, 319, 331, 415, 450, 814, 1145
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	268
PshBI	ATTAAT	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	8 cut(s)	226, 270, 475, 481, 561, 801, 844, 1093
PspEI	GGTNACC	1 cut(s)	1070
PspFI	CCCAGC	1 cut(s)	1009
PspGI	CCWGG	8 cut(s)	226, 270, 475, 481, 561, 801, 844, 1093
PspN4I	GGNNCC	3 cut(s)	36, 559, 1092
PspPI	GGNCC	4 cut(s)	268, 479, 557, 1091
PspPPI	RGGWCCY	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	3 cut(s)	487, 654, 670
RsaNI	GTAC	3 cut(s)	486, 653, 669
RseI	CAYNNNNRTG	1 cut(s)	585
SacI	GAGCTC	1 cut(s)	206
SaqAI	TTAA	4 cut(s)	162, 255, 398, 780
SatI	GCNGC	8 cut(s)	134, 297, 318, 330, 414, 449, 813, 1144
Sau3AI	GATC	4 cut(s)	72, 165, 211, 693
Sau96I	GGNCC	4 cut(s)	268, 479, 557, 1091
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	8 cut(s)	228, 272, 477, 483, 563, 803, 846, 1095
SduI	GDGCHC	3 cut(s)	206, 801, 865
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	4 cut(s)	166, 225, 425, 558
SfcI	CTRYAG	2 cut(s)	336, 741
SinI	GGWCC	3 cut(s)	268, 479, 557
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	3 cut(s)	347, 864, 983
SmoI	CTYRAG	3 cut(s)	347, 864, 983
Sse9I	AATT	5 cut(s)	407, 521, 895, 1044, 1122
SsiI	CCGC	7 cut(s)	9, 18, 68, 791, 812, 858, 1144
SspMI	CTAG	4 cut(s)	420, 452, 755, 1118
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	8 cut(s)	226, 270, 475, 481, 561, 801, 844, 1093
StyI	CCWWGG	3 cut(s)	580, 973, 1104
TaaI	ACNGT	3 cut(s)	194, 263, 727
TaqI	TCGA	1 cut(s)	81
TasI	AATT	5 cut(s)	407, 521, 895, 1044, 1122
TauI	GCSGC	2 cut(s)	815, 1146
TfiI	GAWTC	4 cut(s)	437, 635, 646, 917
Tru1I	TTAA	4 cut(s)	162, 255, 398, 780
Tru9I	TTAA	4 cut(s)	162, 255, 398, 780
TscAI	CASTG	2 cut(s)	268, 637
TseFI	GTSAC	2 cut(s)	109, 466
TseI	GCWGC	6 cut(s)	133, 296, 317, 329, 413, 448
Tsp45I	GTSAC	2 cut(s)	109, 466
TspDTI	ATGAA	5 cut(s)	561, 603, 632, 822, 1175
TspRI	CASTG	2 cut(s)	268, 637
VpaK11BI	GGWCC	3 cut(s)	268, 479, 557
VspI	ATTAAT	1 cut(s)	398
XapI	RAATTY	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XspI	CTAG	4 cut(s)	420, 452, 755, 1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.