RchiOBHm_Chr5g0031361

Protein DJ-1 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
24952372 .. 24956940
4569 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31063

Sequence Viewer

Length: 1350 bp
ATGGCATTGCCTCGCTCATTTCTGTTTGGCTCGTCTCCCTTTATATTACGTAGCAGACTCCATCATATAACAATCCTTCTCCCTTCTCTCACTACCAAACCCATTCCTTCACTCTCTTTCTCTCTCTCCTCCACCACCGCCATGGCTTCCGCTTCTCCCGCCAAGAAGGTTCTGGTTCCGATTGCGAATGGCTCGGAGCAGATGGAGGCGGTGATCTCCGTCGATGTTCTGCGCCGAGCCGGAGCTGATGTCACTATGGCTTCTGTGGAGAAGCAGCTGAGGGTTGAGGCGTGTCATGGGGTTAAGATCATCGCTGATGCTTTGATTTCGGACTGTGGCCAGAGCTCCTTTGATCTCATTACTCTACCTGGAGGGATGGCAGGTGCTCCCAATCTTAAAAACAGTGAGGTCCTGGAAAGTCTGGTGAAAAAGCAAGCTGCCGATGGGAAGCTCTATGCTGCAATCTGTGCTGCACCTGTAGTGGCACTTGAGTCTTGGGGTGTGCTGAAGGGATTGAAAGCAACTTGCTATCCATCATTAATGGAGCAATTAGCAGCATCTAGTGCAACTGCTGTTGAATCAAGAGTGCAGCTAGATGGCAAAGCTGTGACAAGTCCTGGACCTGGTACTACCATAGAGTTTGCTGTTGCACTTGTTGAGCAATTGTATGGGAAAGAGAAAGCTGATGAAGTTTCTGGTCCCCTGGTGATGCGTTCCAACCATGGGGATGAATATATCATAACTGAGCGAAACCCAATGAAGTGGACTTTCACTGATTCCCCAAAGATTCTTGTACCAATAGCTAATGGTACAGAGGAAATGGAAGCTATAATGATCATTGATATTCTCCGACGAGCCAAAGCAACTGTTGTAGTGGCCTCTGTAGAAGATAAGCTAGACATTATTGCTTCTCGCAAAGTTAAGCTGGAAGCGGATGTGCTCCTGGATGAAGCGGCCAAACTTTCGTATGACCTAATAGTTTTACCTGGTGGACTTGGCGGTGCTCAAGCTTTTGCAAAATCAGAAACACTTGTGAATTTATTGAAAAAGCAGAGGGAATCAAATAAGCCGTATGGAGCGATATGTTCTTCACCAGCTTTAGTCTTTGAACCCCATGGCTTACTCAAGGGAAAAAAGGCTACTGCTTTCCCAGCAATGTGCGACAAGCTGTCAGATAAGAGTGAAATTGAAAATAGGGTATTGGTTGATGGTAACCTCATCACCAGCAGGGGGCCAGGAACTTCCATGGAGTTTGCTCTAGGAATTGTTGAGAAGTTTTTTGGCCGCGAAAAAGCAATAGATCTTGCAAAAGTTCTGGTTTTGTTCGTCCATAAAACTATATTCACCTAG

Protein Analysis

449

Amino Acids

47.89

Weight (kDa)

7.59

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 55 - 221 6.3e-45 DJ-1/PfpI family
DJ-1_PfpI PF01965 262 - 424 8.5e-42 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 371
AccII CGCG 1 cut(s) 1287
AciI CCGC 8 cut(s) 138, 150, 159, 209, 932, 953, 999, 1285
AcoI YGGCCR 3 cut(s) 337, 954, 1282
AcsI RAATTY 1 cut(s) 1036
AcuI CTGAAG 1 cut(s) 527
AfaI GTAC 3 cut(s) 628, 795, 811
AfiI CCNNNNNNNGG 3 cut(s) 623, 723, 1230
AgsI TTSAA 5 cut(s) 517, 578, 1045, 1109, 1190
AhdI GACNNNNNGTC 1 cut(s) 1168
AjnI CCWGG 8 cut(s) 367, 411, 616, 622, 702, 942, 985, 1234
Alw21I GWGCWC 4 cut(s) 347, 388, 942, 1006
Alw26I GTCTC 1 cut(s) 39
AoxI GGCC 5 cut(s) 337, 876, 954, 1232, 1282
ApeKI GCWGC 6 cut(s) 274, 437, 458, 470, 554, 589
ApoI RAATTY 1 cut(s) 1036
AseI ATTAAT 1 cut(s) 539
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 4 cut(s) 409, 620, 698, 1232
AsuHPI GGTGA 6 cut(s) 223, 436, 718, 1083, 1213, 1336
AvaII GGWCC 3 cut(s) 409, 620, 698
BalI TGGCCA 1 cut(s) 339
BanII GRGCYC 1 cut(s) 347
Bbv12I GWGCWC 4 cut(s) 347, 388, 942, 1006
BbvCI CCTCAGC 1 cut(s) 278
BbvI GCAGC 6 cut(s) 286, 424, 445, 457, 566, 601
BccI CCATC 7 cut(s) 69, 196, 370, 437, 541, 590, 1202
BceAI ACGGC 1 cut(s) 1054
BciT130I CCWGG 8 cut(s) 369, 413, 618, 624, 704, 944, 987, 1236
BclI TGATCA 1 cut(s) 834
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 5 cut(s) 561, 593, 896, 1259, 1348
BfmI CTRYAG 2 cut(s) 477, 882
BfuAI ACCTGC 1 cut(s) 371
BglII AGATCT 1 cut(s) 1300
BisI GCNGC 8 cut(s) 275, 438, 459, 471, 555, 590, 954, 1285
BlsI GCNGC 8 cut(s) 276, 439, 460, 472, 556, 591, 955, 1286
Bme1390I CCNGG 8 cut(s) 369, 413, 618, 624, 704, 944, 987, 1236
Bme18I GGWCC 3 cut(s) 409, 620, 698
BmeRI GACNNNNNGTC 1 cut(s) 1168
BmgT120I GGNCC 4 cut(s) 409, 620, 698, 1232
BmiI GGNNCC 3 cut(s) 177, 700, 1233
BmrFI CCNGG 8 cut(s) 369, 413, 618, 624, 704, 944, 987, 1236
BmsI GCATC 3 cut(s) 307, 566, 699
BpmI CTGGAG 1 cut(s) 390
Bpu10I CCTNAGC 1 cut(s) 278
BpuEI CTTGAG 3 cut(s) 509, 990, 1109
BsaAI YACGTR 1 cut(s) 50
BsaJI CCNNGG 5 cut(s) 141, 702, 721, 1114, 1245
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 3 cut(s) 623, 723, 1230
Bse3DI GCAATG 2 cut(s) 5, 1161
BseBI CCWGG 8 cut(s) 369, 413, 618, 624, 704, 944, 987, 1236
BseDI CCNNGG 5 cut(s) 141, 702, 721, 1114, 1245
BseGI GGATG 4 cut(s) 381, 733, 940, 952
BseLI CCNNNNNNNGG 3 cut(s) 623, 723, 1230
BseMI GCAATG 2 cut(s) 5, 1161
BseMII CTCAG 2 cut(s) 269, 735
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 6 cut(s) 286, 424, 445, 457, 566, 601
BseYI CCCAGC 1 cut(s) 1150
BsgI GTGCAG 2 cut(s) 456, 608
Bsh1236I CGCG 1 cut(s) 1287
BshFI GGCC 5 cut(s) 339, 878, 956, 1234, 1284
BsiHKAI GWGCWC 4 cut(s) 347, 388, 942, 1006
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 3 cut(s) 623, 723, 1230
BsmAI GTCTC 1 cut(s) 39
BsmBI CGTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 684
BsnI GGCC 5 cut(s) 339, 878, 956, 1234, 1284
Bsp1286I GDGCHC 4 cut(s) 347, 388, 942, 1006
Bsp143I GATC 5 cut(s) 213, 306, 352, 834, 1300
Bsp19I CCATGG 4 cut(s) 141, 721, 1114, 1245
BspACI CCGC 8 cut(s) 138, 150, 159, 209, 932, 953, 999, 1285
BspANI GGCC 5 cut(s) 339, 878, 956, 1234, 1284
BspCNI CTCAG 2 cut(s) 270, 736
BspFNI CGCG 1 cut(s) 1287
BspLI GGNNCC 3 cut(s) 177, 700, 1233
BspMI ACCTGC 1 cut(s) 371
BsrDI GCAATG 2 cut(s) 5, 1161
BssECI CCNNGG 5 cut(s) 141, 702, 721, 1114, 1245
BssMI GATC 5 cut(s) 213, 306, 352, 834, 1300
BssT1I CCWWGG 4 cut(s) 141, 721, 1114, 1245
Bst2UI CCWGG 8 cut(s) 369, 413, 618, 624, 704, 944, 987, 1236
Bst4CI ACNGT 3 cut(s) 335, 404, 868
BstAPI GCANNNNNTGC 2 cut(s) 467, 563
BstBAI YACGTR 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 2 cut(s) 278, 744
BstDSI CCRYGG 4 cut(s) 141, 721, 1114, 1245
BstEII GGTNACC 1 cut(s) 1211
BstF5I GGATG 4 cut(s) 381, 733, 940, 952
BstFNI CGCG 1 cut(s) 1287
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 5 cut(s) 216, 309, 355, 837, 1303
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 5 cut(s) 213, 306, 352, 834, 1300
BstMWI GCNNNNNNNGC 4 cut(s) 158, 467, 563, 1151
BstNI CCWGG 8 cut(s) 369, 413, 618, 624, 704, 944, 987, 1236
BstPI GGTNACC 1 cut(s) 1211
BstSCI CCNGG 8 cut(s) 367, 411, 616, 622, 702, 942, 985, 1234
BstSFI CTRYAG 2 cut(s) 477, 882
BstSNI TACGTA 1 cut(s) 50
BstUI CGCG 1 cut(s) 1287
BstV1I GCAGC 6 cut(s) 286, 424, 445, 457, 566, 601
BstX2I RGATCY 1 cut(s) 1300
BstXI CCANNNNNNTGG 2 cut(s) 142, 762
BstYI RGATCY 1 cut(s) 1300
BsuRI GGCC 5 cut(s) 339, 878, 956, 1234, 1284
BtgI CCRYGG 4 cut(s) 141, 721, 1114, 1245
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 4 cut(s) 381, 733, 940, 952
BtsIMutI CAGTG 2 cut(s) 409, 771
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 1 cut(s) 435
CfoI GCGC 1 cut(s) 234
Cfr13I GGNCC 4 cut(s) 409, 620, 698, 1232
CsiI ACCWGGT 2 cut(s) 622, 985
Csp6I GTAC 3 cut(s) 627, 794, 810
CviAII CATG 5 cut(s) 142, 296, 722, 1115, 1246
CviQI GTAC 3 cut(s) 627, 794, 810
DdeI CTNAG 2 cut(s) 278, 744
DpnI GATC 5 cut(s) 215, 308, 354, 836, 1302
DpnII GATC 5 cut(s) 213, 306, 352, 834, 1300
DriI GACNNNNNGTC 1 cut(s) 1168
EaeI YGGCCR 3 cut(s) 337, 954, 1282
Eam1105I GACNNNNNGTC 1 cut(s) 1168
Ecl136II GAGCTC 1 cut(s) 345
Eco105I TACGTA 1 cut(s) 50
Eco130I CCWWGG 4 cut(s) 141, 721, 1114, 1245
Eco24I GRGCYC 1 cut(s) 347
Eco47I GGWCC 3 cut(s) 409, 620, 698
Eco53kI GAGCTC 1 cut(s) 345
Eco57I CTGAAG 1 cut(s) 527
Eco91I GGTNACC 1 cut(s) 1211
EcoICRI GAGCTC 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 1211
EcoRII CCWGG 8 cut(s) 367, 411, 616, 622, 702, 942, 985, 1234
EcoT14I CCWWGG 4 cut(s) 141, 721, 1114, 1245
EcoT38I GRGCYC 1 cut(s) 347
ErhI CCWWGG 4 cut(s) 141, 721, 1114, 1245
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 5 cut(s) 145, 299, 725, 1118, 1249
FaqI GGGAC 1 cut(s) 684
FatI CATG 5 cut(s) 141, 295, 721, 1114, 1245
FauI CCCGC 1 cut(s) 166
FbaI TGATCA 1 cut(s) 834
Fnu4HI GCNGC 8 cut(s) 275, 438, 459, 471, 555, 590, 954, 1285
FokI GGATG 4 cut(s) 388, 740, 947, 959
FriOI GRGCYC 1 cut(s) 347
Fsp4HI GCNGC 8 cut(s) 275, 438, 459, 471, 555, 590, 954, 1285
FspBI CTAG 5 cut(s) 561, 593, 896, 1259, 1348
GlaI GCGC 1 cut(s) 233
GluI GCNGC 8 cut(s) 275, 438, 459, 471, 555, 590, 954, 1285
GsaI CCCAGC 1 cut(s) 1154
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 5 cut(s) 339, 878, 956, 1234, 1284
HapII CCGG 1 cut(s) 240
HhaI GCGC 1 cut(s) 234
Hin1II CATG 5 cut(s) 145, 299, 725, 1118, 1249
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 1008
HinfI GANTC 6 cut(s) 57, 491, 578, 776, 787, 1058
HpaII CCGG 1 cut(s) 240
HphI GGTGA 6 cut(s) 223, 436, 718, 1083, 1213, 1336
Hpy166II GTNNAC 2 cut(s) 765, 992
Hpy188I TCNGA 6 cut(s) 180, 196, 331, 851, 1024, 1174
Hpy188III TCNNGA 1 cut(s) 582
Hpy8I GTNNAC 2 cut(s) 765, 992
Hpy99I CGWCG 2 cut(s) 224, 855
HpyAV CCTTC 5 cut(s) 86, 93, 117, 160, 502
HpyCH4III ACNGT 3 cut(s) 335, 404, 868
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 7 cut(s) 461, 473, 566, 589, 650, 1016, 1307
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 467, 563, 1151
HpyF3I CTNAG 2 cut(s) 278, 744
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 5 cut(s) 145, 299, 725, 1118, 1249
HspAI GCGC 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 5 cut(s) 213, 306, 352, 834, 1300
LmnI GCTCC 7 cut(s) 196, 242, 350, 391, 544, 945, 1076
Lsp1109I GCAGC 6 cut(s) 286, 424, 445, 457, 566, 601
LweI GCATC 3 cut(s) 307, 566, 699
MabI ACCWGGT 2 cut(s) 622, 985
MaeI CTAG 5 cut(s) 561, 593, 896, 1259, 1348
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 3 cut(s) 250, 607, 1211
MalI GATC 5 cut(s) 215, 308, 354, 836, 1302
MboI GATC 5 cut(s) 213, 306, 352, 834, 1300
MboII GAAGA 2 cut(s) 899, 1080
MfeI CAATTG 1 cut(s) 662
MflI RGATCY 1 cut(s) 1300
MhlI GDGCHC 4 cut(s) 347, 388, 942, 1006
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 5 cut(s) 548, 662, 1036, 1185, 1263
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 2 cut(s) 51, 500
MmeI TCCRAC 2 cut(s) 741, 874
Mox20I TGGCCA 1 cut(s) 339
MscI TGGCCA 1 cut(s) 339
MseI TTAA 4 cut(s) 303, 396, 539, 921
MslI CAYNNNNRTG 2 cut(s) 140, 726
Msp20I TGGCCA 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 8 cut(s) 369, 413, 618, 624, 704, 944, 987, 1236
MunI CAATTG 1 cut(s) 662
MvaI CCWGG 8 cut(s) 369, 413, 618, 624, 704, 944, 987, 1236
MvnI CGCG 1 cut(s) 1287
MwoI GCNNNNNNNGC 4 cut(s) 158, 467, 563, 1151
NcoI CCATGG 4 cut(s) 141, 721, 1114, 1245
NdeII GATC 5 cut(s) 213, 306, 352, 834, 1300
NlaIII CATG 5 cut(s) 145, 299, 725, 1118, 1249
NlaIV GGNNCC 3 cut(s) 177, 700, 1233
NmeAIII GCCGAG 1 cut(s) 260
NmuCI GTSAC 2 cut(s) 250, 607
PaqCI CACCTGC 1 cut(s) 371
PfeI GAWTC 4 cut(s) 578, 776, 787, 1058
PfoI TCCNGGA 3 cut(s) 411, 616, 942
PkrI GCNGC 8 cut(s) 276, 439, 460, 472, 556, 591, 955, 1286
PleI GAGTC 2 cut(s) 51, 499
PpsI GAGTC 2 cut(s) 51, 499
Ppu21I YACGTR 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 409
PshBI ATTAAT 1 cut(s) 539
Psp124BI GAGCTC 1 cut(s) 347
Psp5II RGGWCCY 1 cut(s) 409
Psp6I CCWGG 8 cut(s) 367, 411, 616, 622, 702, 942, 985, 1234
PspEI GGTNACC 1 cut(s) 1211
PspFI CCCAGC 1 cut(s) 1150
PspGI CCWGG 8 cut(s) 367, 411, 616, 622, 702, 942, 985, 1234
PspN4I GGNNCC 3 cut(s) 177, 700, 1233
PspPI GGNCC 4 cut(s) 409, 620, 698, 1232
PspPPI RGGWCCY 1 cut(s) 409
PsuI RGATCY 1 cut(s) 1300
PvuII CAGCTG 1 cut(s) 277
RsaI GTAC 3 cut(s) 628, 795, 811
RsaNI GTAC 3 cut(s) 627, 794, 810
RseI CAYNNNNRTG 2 cut(s) 140, 726
SacI GAGCTC 1 cut(s) 347
SaqAI TTAA 4 cut(s) 303, 396, 539, 921
SatI GCNGC 8 cut(s) 275, 438, 459, 471, 555, 590, 954, 1285
Sau3AI GATC 5 cut(s) 213, 306, 352, 834, 1300
Sau96I GGNCC 4 cut(s) 409, 620, 698, 1232
SchI GAGTC 2 cut(s) 51, 500
ScrFI CCNGG 8 cut(s) 369, 413, 618, 624, 704, 944, 987, 1236
SduI GDGCHC 4 cut(s) 347, 388, 942, 1006
SexAI ACCWGGT 2 cut(s) 622, 985
SfaNI GCATC 3 cut(s) 307, 566, 699
SfcI CTRYAG 2 cut(s) 477, 882
SinI GGWCC 3 cut(s) 409, 620, 698
SmiMI CAYNNNNRTG 2 cut(s) 140, 726
SmlI CTYRAG 3 cut(s) 488, 1005, 1124
SmoI CTYRAG 3 cut(s) 488, 1005, 1124
SnaBI TACGTA 1 cut(s) 50
Sse9I AATT 5 cut(s) 548, 662, 1036, 1185, 1263
SsiI CCGC 8 cut(s) 138, 150, 159, 209, 932, 953, 999, 1285
SspMI CTAG 5 cut(s) 561, 593, 896, 1259, 1348
SstI GAGCTC 1 cut(s) 347
StyD4I CCNGG 8 cut(s) 367, 411, 616, 622, 702, 942, 985, 1234
StyI CCWWGG 4 cut(s) 141, 721, 1114, 1245
TaaI ACNGT 3 cut(s) 335, 404, 868
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 222
TasI AATT 5 cut(s) 548, 662, 1036, 1185, 1263
TauI GCSGC 2 cut(s) 956, 1287
TfiI GAWTC 4 cut(s) 578, 776, 787, 1058
Tru1I TTAA 4 cut(s) 303, 396, 539, 921
Tru9I TTAA 4 cut(s) 303, 396, 539, 921
TscAI CASTG 2 cut(s) 409, 778
TseFI GTSAC 2 cut(s) 250, 607
TseI GCWGC 6 cut(s) 274, 437, 458, 470, 554, 589
Tsp45I GTSAC 2 cut(s) 250, 607
TspDTI ATGAA 4 cut(s) 702, 744, 773, 963
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 2 cut(s) 409, 778
VpaK11BI GGWCC 3 cut(s) 409, 620, 698
VspI ATTAAT 1 cut(s) 539
XapI RAATTY 1 cut(s) 1036
XcmI CCANNNNNNNNNTGG 2 cut(s) 139, 169
XspI CTAG 5 cut(s) 561, 593, 896, 1259, 1348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.