Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005791

Physical Location & Seq

Genomic Coordinates Forward (+)

11887444 .. 11891939

Gene Structure 4496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18570.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTTCTGCTTCTCCCGCCAAGAAGGTTCTGGTTCCGATTGCGAACGGCACGGAGCCGATGGAGGCGGTGATCACCGTCGATGTTCTGCGCCGAGCCGGAGCTGATGTCACCGTGGCTTCTGTGGAGAAGCAGCTGAGGGTTGAGGCTTGTCACGGGGTTAAGATCATCGCTGATGCTTTGGTTTCGGATTGTGGCCGGAGCTCCTTCGATCTCATTACTCTGCCTGGAGGGATGCCTGGTGCTACCAATCTTAAGGATTGTGAGGTCCTGGAAAGCCTAGTTAAAAAGCAAGTTGCAGATGGGAAGCTCTATGCTGCAATCTGTGCTTCACCTGCAGTGGCACTTGGGTCTTGGGGTGTGCTGAAGGGATTGAAAGCAACTTGCTATCCATCATTTATGGAGCAACTAGCAGCATCTGGTGCAACTGCTGTTGAATCGAGAGTGCAGCTAGATGGCAAAGCTGTGACAAGTCGTGGACCTGGTACTACCATGGAGTTCGCTGTTGCACTTGTTGAGCAATTGTGTGGGAAAGAGAAAGCTGATGAAGTTTCTGGTCCCATGGTGATGCGTGCTAACCATGGGGATGAATATATCATAACGGAGCGAAACCCAATGAAGTGGACTTCCACTGATTCACCAAAGATTCTTGTACCGATAGCTAATGGTACAGAGGAAATGGAAGTGATTATGATCATTGATATTCTACGAAGAGCCAAAGCAACCGTTGTAGTGGCCTCTGTTGAAGACAAGCTAGACACTATTGCTTCTCGCAAAGTTAAGCTGGAAGCAGATGTGCTCCTGGATGAAGCAGCCAAAAGGTGGAATTGGTGGTGCCCAAGCATTTGCAAAATCAGAAACACTTGTGAATTTGTTAAAAAGGCAAAGGGACTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

300

Amino Acids

31.99

Weight (kDa)

7.47

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	48 - 214	5.4e-47	DJ-1/PfpI family
DJ-1_PfpI	PF01965	255 - 417	7.7e-42	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53280 AT1G53280 AT3G14990 AT3G14990 AT3G14990
fragaria_vesca	FvH4_3g18570 FvH4_3g18570 FvH4_3g18570
malus_domestica	MD03G1241000.v1.1 MD11G1260500.v1.1
prunus_persica	Prupe.4G167800_v2.0.a1 Prupe.4G167900_v2.0.a1
pyrus_communis	pycom11g22990
rosa_chinensis	RchiOBHm_Chr5g0031321 RchiOBHm_Chr5g0031331 RchiOBHm_Chr5g0031361 RchiOBHm_Chr5g0031371
rosa_laevigata	RLG00000033301
rosa_multiflora	Rmu_sc0007782.1_g000014 Rmu_sc0018148.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048960
rosa_rugosa	Rorug05G0124300 Rorug05G0124700
rosa_samantha	Rh5AG217400 Rh5BG217100 Rh5CG240700 Rh5DG222400
rosa_wichuraiana	Rw5G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	343
Acc36I	ACCTGC	1 cut(s)	343
AccB1I	GGYRCC	1 cut(s)	834
AccB7I	CCANNNNNTGG	1 cut(s)	822
AciI	CCGC	2 cut(s)	18, 68
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	869
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	3 cut(s)	487, 654, 670
AfiI	CCNNNNNNNGG	1 cut(s)	822
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	376, 437, 746
AjnI	CCWGG	5 cut(s)	226, 238, 270, 481, 801
Alw21I	GWGCWC	2 cut(s)	206, 801
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	196, 735
ApeKI	GCWGC	5 cut(s)	133, 317, 413, 448, 812
ApoI	RAATTY	1 cut(s)	869
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	3 cut(s)	268, 479, 557
AsuHPI	GGTGA	6 cut(s)	67, 82, 103, 324, 577, 630
AvaII	GGWCC	3 cut(s)	268, 479, 557
BaeGI	GKGCMC	1 cut(s)	839
BanI	GGYRCC	1 cut(s)	834
BanII	GRGCYC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	2 cut(s)	206, 801
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	5 cut(s)	145, 304, 425, 460, 824
BccI	CCATC	4 cut(s)	55, 296, 400, 449
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	5 cut(s)	228, 240, 272, 483, 803
BclI	TGATCA	2 cut(s)	72, 693
BfaI	CTAG	4 cut(s)	281, 410, 452, 755
BfmI	CTRYAG	1 cut(s)	336
BfrI	CTTAAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	343
BisI	GCNGC	5 cut(s)	134, 318, 414, 449, 813
BlsI	GCNGC	5 cut(s)	135, 319, 415, 450, 814
Bme1390I	CCNGG	5 cut(s)	228, 240, 272, 483, 803
Bme18I	GGWCC	3 cut(s)	268, 479, 557
BmgT120I	GGNCC	3 cut(s)	268, 479, 557
BmiI	GGNNCC	4 cut(s)	36, 57, 559, 836
BmrFI	CCNGG	5 cut(s)	228, 240, 272, 483, 803
BmsI	GCATC	4 cut(s)	166, 225, 425, 558
BpiI	GAAGAC	1 cut(s)	753
BpmI	CTGGAG	1 cut(s)	249
Bpu10I	CCTNAGC	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	692
BsaJI	CCNNGG	4 cut(s)	114, 492, 561, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	822
Bse8I	GATNNNNATC	1 cut(s)	692
BseBI	CCWGG	5 cut(s)	228, 240, 272, 483, 803
BseDI	CCNNGG	4 cut(s)	114, 492, 561, 580
BseGI	GGATG	3 cut(s)	240, 592, 811
BseJI	GATNNNNATC	1 cut(s)	692
BseLI	CCNNNNNNNGG	1 cut(s)	822
BseMII	CTCAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	839
BseXI	GCAGC	5 cut(s)	145, 304, 425, 460, 824
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	198, 737
BshNI	GGYRCC	1 cut(s)	834
BsiHKAI	GWGCWC	2 cut(s)	206, 801
BsiSI	CCGG	2 cut(s)	99, 199
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	1 cut(s)	822
BsmFI	GGGAC	1 cut(s)	543
BsnI	GGCC	2 cut(s)	198, 737
Bsp1286I	GDGCHC	3 cut(s)	206, 801, 839
Bsp143I	GATC	4 cut(s)	72, 165, 211, 693
Bsp19I	CCATGG	3 cut(s)	492, 561, 580
BspACI	CCGC	2 cut(s)	18, 68
BspANI	GGCC	2 cut(s)	198, 737
BspCNI	CTCAG	1 cut(s)	129
BspLI	GGNNCC	4 cut(s)	36, 57, 559, 836
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	343
BspQI	GCTCTTC	1 cut(s)	706
BspT107I	GGYRCC	1 cut(s)	834
BspTI	CTTAAG	1 cut(s)	254
BssECI	CCNNGG	4 cut(s)	114, 492, 561, 580
BssMI	GATC	4 cut(s)	72, 165, 211, 693
BssT1I	CCWWGG	3 cut(s)	492, 561, 580
Bst2UI	CCWGG	5 cut(s)	228, 240, 272, 483, 803
Bst4CI	ACNGT	3 cut(s)	79, 115, 727
Bst6I	CTCTTC	1 cut(s)	706
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	2 cut(s)	326, 422
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	4 cut(s)	114, 492, 561, 580
BstF5I	GGATG	3 cut(s)	240, 592, 811
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	4 cut(s)	75, 168, 214, 696
BstMBI	GATC	4 cut(s)	72, 165, 211, 693
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 326, 335, 422
BstNI	CCWGG	5 cut(s)	228, 240, 272, 483, 803
BstSCI	CCNGG	5 cut(s)	226, 238, 270, 481, 801
BstSFI	CTRYAG	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	839
BstV1I	GCAGC	5 cut(s)	145, 304, 425, 460, 824
BstV2I	GAAGAC	1 cut(s)	753
BstXI	CCANNNNNNTGG	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	198, 737
BtgI	CCRYGG	4 cut(s)	114, 492, 561, 580
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	240, 592, 811
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	345, 630
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	573
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	3 cut(s)	268, 479, 557
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	3 cut(s)	486, 653, 669
CviAII	CATG	3 cut(s)	493, 562, 581
CviQI	GTAC	3 cut(s)	486, 653, 669
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	4 cut(s)	74, 167, 213, 695
DpnII	GATC	4 cut(s)	72, 165, 211, 693
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	706
EarI	CTCTTC	1 cut(s)	706
Ecl136II	GAGCTC	1 cut(s)	204
Eco130I	CCWWGG	3 cut(s)	492, 561, 580
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	3 cut(s)	268, 479, 557
Eco53kI	GAGCTC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	5 cut(s)	226, 238, 270, 481, 801
EcoT14I	CCWWGG	3 cut(s)	492, 561, 580
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	3 cut(s)	492, 561, 580
FaeI	CATG	3 cut(s)	496, 565, 584
FaiI	YATR	8 cut(s)	315, 401, 494, 563, 582, 594, 599, 692
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	3 cut(s)	492, 561, 580
FauI	CCCGC	1 cut(s)	25
FbaI	TGATCA	2 cut(s)	72, 693
Fnu4HI	GCNGC	5 cut(s)	134, 318, 414, 449, 813
FokI	GGATG	3 cut(s)	247, 599, 818
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	5 cut(s)	134, 318, 414, 449, 813
FspBI	CTAG	4 cut(s)	281, 410, 452, 755
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	5 cut(s)	134, 318, 414, 449, 813
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	198, 737
HapII	CCGG	2 cut(s)	99, 199
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	496, 565, 584
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	4 cut(s)	437, 635, 646, 891
HpaII	CCGG	2 cut(s)	99, 199
HphI	GGTGA	6 cut(s)	67, 82, 103, 324, 577, 630
Hpy166II	GTNNAC	2 cut(s)	479, 624
Hpy188I	TCNGA	3 cut(s)	39, 190, 857
Hpy188III	TCNNGA	1 cut(s)	441
Hpy8I	GTNNAC	2 cut(s)	479, 624
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	19, 217, 361
HpyCH4III	ACNGT	3 cut(s)	79, 115, 727
HpyCH4V	TGCA	7 cut(s)	299, 320, 338, 425, 448, 509, 849
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 326, 335, 422
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	496, 565, 584
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	2 cut(s)	72, 693
Kzo9I	GATC	4 cut(s)	72, 165, 211, 693
LguI	GCTCTTC	1 cut(s)	706
LmnI	GCTCC	7 cut(s)	55, 101, 201, 209, 403, 604, 804
Lsp1109I	GCAGC	5 cut(s)	145, 304, 425, 460, 824
LweI	GCATC	4 cut(s)	166, 225, 425, 558
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	4 cut(s)	281, 410, 452, 755
MaeIII	GTNAC	3 cut(s)	109, 152, 466
MalI	GATC	4 cut(s)	74, 167, 213, 695
MboI	GATC	4 cut(s)	72, 165, 211, 693
MboII	GAAGA	2 cut(s)	723, 758
MfeI	CAATTG	1 cut(s)	521
MhlI	GDGCHC	3 cut(s)	206, 801, 839
MluCI	AATT	3 cut(s)	521, 826, 869
MlyI	GAGTC	1 cut(s)	885
MnlI	CCTC	7 cut(s)	58, 132, 139, 224, 259, 667, 748
MseI	TTAA	5 cut(s)	162, 255, 285, 780, 876
MslI	CAYNNNNRTG	2 cut(s)	566, 585
MspA1I	CMGCKG	1 cut(s)	136
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	99, 199
MspR9I	CCNGG	5 cut(s)	228, 240, 272, 483, 803
MunI	CAATTG	1 cut(s)	521
MvaI	CCWGG	5 cut(s)	228, 240, 272, 483, 803
MwoI	GCNNNNNNNGC	4 cut(s)	17, 326, 335, 422
NcoI	CCATGG	3 cut(s)	492, 561, 580
NdeII	GATC	4 cut(s)	72, 165, 211, 693
NlaIII	CATG	3 cut(s)	496, 565, 584
NlaIV	GGNNCC	4 cut(s)	36, 57, 559, 836
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	3 cut(s)	109, 152, 466
PaqCI	CACCTGC	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	706
PfeI	GAWTC	3 cut(s)	437, 635, 646
PflMI	CCANNNNNTGG	1 cut(s)	822
PfoI	TCCNGGA	2 cut(s)	270, 801
PkrI	GCNGC	5 cut(s)	135, 319, 415, 450, 814
PleI	GAGTC	1 cut(s)	885
PpsI	GAGTC	1 cut(s)	885
PpuMI	RGGWCCY	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	5 cut(s)	226, 238, 270, 481, 801
PspGI	CCWGG	5 cut(s)	226, 238, 270, 481, 801
PspN4I	GGNNCC	4 cut(s)	36, 57, 559, 836
PspPI	GGNCC	3 cut(s)	268, 479, 557
PspPPI	RGGWCCY	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	3 cut(s)	487, 654, 670
RsaNI	GTAC	3 cut(s)	486, 653, 669
RseI	CAYNNNNRTG	2 cut(s)	566, 585
SacI	GAGCTC	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	706
SaqAI	TTAA	5 cut(s)	162, 255, 285, 780, 876
SatI	GCNGC	5 cut(s)	134, 318, 414, 449, 813
Sau3AI	GATC	4 cut(s)	72, 165, 211, 693
Sau96I	GGNCC	3 cut(s)	268, 479, 557
SchI	GAGTC	1 cut(s)	885
ScrFI	CCNGG	5 cut(s)	228, 240, 272, 483, 803
SduI	GDGCHC	3 cut(s)	206, 801, 839
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	4 cut(s)	166, 225, 425, 558
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	3 cut(s)	268, 479, 557
SmiMI	CAYNNNNRTG	2 cut(s)	566, 585
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	521, 826, 869
SsiI	CCGC	2 cut(s)	18, 68
SspMI	CTAG	4 cut(s)	281, 410, 452, 755
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	5 cut(s)	226, 238, 270, 481, 801
StyI	CCWWGG	3 cut(s)	492, 561, 580
TaaI	ACNGT	3 cut(s)	79, 115, 727
TaqI	TCGA	3 cut(s)	81, 210, 440
TasI	AATT	3 cut(s)	521, 826, 869
TfiI	GAWTC	3 cut(s)	437, 635, 646
Tru1I	TTAA	5 cut(s)	162, 255, 285, 780, 876
Tru9I	TTAA	5 cut(s)	162, 255, 285, 780, 876
TscAI	CASTG	2 cut(s)	345, 637
TseFI	GTSAC	3 cut(s)	109, 152, 466
TseI	GCWGC	5 cut(s)	133, 317, 413, 448, 812
Tsp45I	GTSAC	3 cut(s)	109, 152, 466
TspDTI	ATGAA	4 cut(s)	561, 603, 632, 822
TspGWI	ACGGA	2 cut(s)	68, 617
TspRI	CASTG	2 cut(s)	345, 637
Van91I	CCANNNNNTGG	1 cut(s)	822
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	3 cut(s)	268, 479, 557
XapI	RAATTY	1 cut(s)	869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XspI	CTAG	4 cut(s)	281, 410, 452, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.