RchiOBHm_Chr5g0031321

Protein DJ-1 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
24918826 .. 24923235
4410 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31059

Sequence Viewer

Length: 1347 bp
ATGGCATTGCCTCGCTCATTTCTGTTTGGCTCGTCTCCCTTTATATTATTATGTAGCAGACTCCATCATATAACCCCTGCAACAATCCTTCTCTCTTCTCTCACTACCAAACCCATTCCTTCACTCTCTTTCTCTCTCTCCTCCACCACCGCCATGGCTTCCGCTTCTCCCGCCAAGAAGGTTCTGGTTCCGATTGCGAATGGCTCGGAGCAGATGGAGGCGGTGATCTCCGTCGATGTTCTGCGCCGAGCCGGAGCTGATGTCACTATGGCTTCTGTGGAGAAGCAGCTGAGGGTTGAGGCGTGTCATGGGGTTAAGATCATCGCTGATGCTTTGATTTCGGACTGTGGCCAGAGCTCCTTTGATCTCATTACTCTACCTGGAGGGATGGCAGGTGCTCCCAATCTTAAAAACAGTGAGGTCCTGGAAAGTCTGGTGAAAAAGCAAGCTGCCGATGGGAAGCTCTATGCTGGAATCTGTGCTGCACCTGTAGTGGCACTTGAGTCTTGGGGTGTGCTGAAGGGATTGAAAGCAACTTGCTATCCATCATTAATGGAGCAATTAGCAGCATCTAGTGCAATTGCTGTTGAATCAAGAGTGCAGCTAGATGGCAAAGCTGTGACAAGTCCTGGACCTGGTACTACCATAGAGTGTGCTGTTGCACTTGTTGAGCAATTGTATGGGAAAGAGAAAGCTGATGAAGTTTCTGGTCCCCTGGTGATGCGTTCCAACCATGGGGATGAATATATCATAACTGAGCGAAACCCAATGAAGTGGACTTTCACTGATTCCCCAAAGATTCTTGTACCAATAGCTAATGGTACAGAGGAAATGGAAGCTATAATGATCATTGATATTCTCCGACGAGCCAAAGCAACTGTTGTAGTGGCCTCTGTAGAAGATAAGCTAGACATTATTGCTTCTCGCAAAGTTAAGCTGGAAGCGGATGTGCTCCTGGATGAAGCGGCCAAACTTTCGTATGACCTAATAGTTTTACCTGGTGGACTTGGCGGTGCTCAAGCTTTTGCAAAATCAGAAACACTTGTGAATTTATTGAAAAAGCAGAGGGAATCAAATAAGCCTTATGGAGCTATATGTGCTTCACCAGCTTTAGTCTTTGAACCCCATGGCTTACTCAAGGGAAAAAAGGCTACTGCTTTCCCAGCAATGTGCGACAAGCTGTCAGATAAGAGTGAAATTGAAAATAGGGTATTGGTTGATGGTAACCTCATCACCAGCAGGGGGCCAGGAACTTCCATGGAGTTTGCTCTAGGAATTGTTGAGAAGTTTTTTGGCCGCGAAAAAGCAATAGATCTTGCAAAAGTTCTGGTTTTTGTTCGTCCATAA

Protein Analysis

448

Amino Acids

47.56

Weight (kDa)

6.96

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 59 - 225 1.2e-41 DJ-1/PfpI family
DJ-1_PfpI PF01965 266 - 428 3.4e-42 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 383
Acc36I ACCTGC 1 cut(s) 383
AccII CGCG 1 cut(s) 1299
AciI CCGC 8 cut(s) 150, 162, 171, 221, 944, 965, 1011, 1297
AcoI YGGCCR 3 cut(s) 349, 966, 1294
AcsI RAATTY 1 cut(s) 1048
AcuI CTGAAG 1 cut(s) 539
AfaI GTAC 3 cut(s) 640, 807, 823
AfiI CCNNNNNNNGG 3 cut(s) 635, 735, 1242
AgsI TTSAA 5 cut(s) 529, 590, 1057, 1121, 1202
AhdI GACNNNNNGTC 1 cut(s) 1180
AjnI CCWGG 8 cut(s) 379, 423, 628, 634, 714, 954, 997, 1246
Alw21I GWGCWC 4 cut(s) 359, 400, 954, 1018
Alw26I GTCTC 1 cut(s) 39
AoxI GGCC 5 cut(s) 349, 888, 966, 1244, 1294
ApeKI GCWGC 5 cut(s) 286, 449, 482, 566, 601
ApoI RAATTY 1 cut(s) 1048
AseI ATTAAT 1 cut(s) 551
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 4 cut(s) 421, 632, 710, 1244
AsuHPI GGTGA 5 cut(s) 235, 448, 730, 1095, 1225
AvaII GGWCC 3 cut(s) 421, 632, 710
BalI TGGCCA 1 cut(s) 351
BanII GRGCYC 1 cut(s) 359
Bbv12I GWGCWC 4 cut(s) 359, 400, 954, 1018
BbvCI CCTCAGC 1 cut(s) 290
BbvI GCAGC 5 cut(s) 298, 436, 469, 578, 613
BccI CCATC 7 cut(s) 72, 208, 382, 449, 553, 602, 1214
BciT130I CCWGG 8 cut(s) 381, 425, 630, 636, 716, 956, 999, 1248
BclI TGATCA 1 cut(s) 846
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 4 cut(s) 573, 605, 908, 1271
BfmI CTRYAG 2 cut(s) 489, 894
BfuAI ACCTGC 1 cut(s) 383
BglII AGATCT 1 cut(s) 1312
BisI GCNGC 7 cut(s) 287, 450, 483, 567, 602, 966, 1297
BlsI GCNGC 7 cut(s) 288, 451, 484, 568, 603, 967, 1298
Bme1390I CCNGG 8 cut(s) 381, 425, 630, 636, 716, 956, 999, 1248
Bme18I GGWCC 3 cut(s) 421, 632, 710
BmeRI GACNNNNNGTC 1 cut(s) 1180
BmgT120I GGNCC 4 cut(s) 421, 632, 710, 1244
BmiI GGNNCC 3 cut(s) 189, 712, 1245
BmrFI CCNGG 8 cut(s) 381, 425, 630, 636, 716, 956, 999, 1248
BmsI GCATC 3 cut(s) 319, 578, 711
BpmI CTGGAG 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 290
BpuEI CTTGAG 3 cut(s) 521, 1002, 1121
BsaJI CCNNGG 5 cut(s) 153, 714, 733, 1126, 1257
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 3 cut(s) 635, 735, 1242
Bse3DI GCAATG 2 cut(s) 5, 1173
BseBI CCWGG 8 cut(s) 381, 425, 630, 636, 716, 956, 999, 1248
BseDI CCNNGG 5 cut(s) 153, 714, 733, 1126, 1257
BseGI GGATG 4 cut(s) 393, 745, 952, 964
BseLI CCNNNNNNNGG 3 cut(s) 635, 735, 1242
BseMI GCAATG 2 cut(s) 5, 1173
BseMII CTCAG 2 cut(s) 281, 747
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 5 cut(s) 298, 436, 469, 578, 613
BseYI CCCAGC 1 cut(s) 1162
BsgI GTGCAG 2 cut(s) 468, 620
Bsh1236I CGCG 1 cut(s) 1299
BshFI GGCC 5 cut(s) 351, 890, 968, 1246, 1296
BsiHKAI GWGCWC 4 cut(s) 359, 400, 954, 1018
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 3 cut(s) 635, 735, 1242
BsmAI GTCTC 1 cut(s) 39
BsmBI CGTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 5 cut(s) 351, 890, 968, 1246, 1296
Bsp1286I GDGCHC 4 cut(s) 359, 400, 954, 1018
Bsp143I GATC 5 cut(s) 225, 318, 364, 846, 1312
Bsp19I CCATGG 4 cut(s) 153, 733, 1126, 1257
BspACI CCGC 8 cut(s) 150, 162, 171, 221, 944, 965, 1011, 1297
BspANI GGCC 5 cut(s) 351, 890, 968, 1246, 1296
BspCNI CTCAG 2 cut(s) 282, 748
BspFNI CGCG 1 cut(s) 1299
BspLI GGNNCC 3 cut(s) 189, 712, 1245
BspMI ACCTGC 1 cut(s) 383
BsrDI GCAATG 2 cut(s) 5, 1173
BssECI CCNNGG 5 cut(s) 153, 714, 733, 1126, 1257
BssMI GATC 5 cut(s) 225, 318, 364, 846, 1312
BssT1I CCWWGG 4 cut(s) 153, 733, 1126, 1257
Bst2UI CCWGG 8 cut(s) 381, 425, 630, 636, 716, 956, 999, 1248
Bst4CI ACNGT 3 cut(s) 347, 416, 880
Bst6I CTCTTC 1 cut(s) 100
BstAPI GCANNNNNTGC 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 2 cut(s) 290, 756
BstDSI CCRYGG 4 cut(s) 153, 733, 1126, 1257
BstEII GGTNACC 1 cut(s) 1223
BstF5I GGATG 4 cut(s) 393, 745, 952, 964
BstFNI CGCG 1 cut(s) 1299
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 5 cut(s) 228, 321, 367, 849, 1315
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 5 cut(s) 225, 318, 364, 846, 1312
BstMWI GCNNNNNNNGC 5 cut(s) 170, 575, 1097, 1106, 1163
BstNI CCWGG 8 cut(s) 381, 425, 630, 636, 716, 956, 999, 1248
BstPI GGTNACC 1 cut(s) 1223
BstSCI CCNGG 8 cut(s) 379, 423, 628, 634, 714, 954, 997, 1246
BstSFI CTRYAG 2 cut(s) 489, 894
BstUI CGCG 1 cut(s) 1299
BstV1I GCAGC 5 cut(s) 298, 436, 469, 578, 613
BstX2I RGATCY 1 cut(s) 1312
BstXI CCANNNNNNTGG 2 cut(s) 154, 774
BstYI RGATCY 1 cut(s) 1312
BsuRI GGCC 5 cut(s) 351, 890, 968, 1246, 1296
BtgI CCRYGG 4 cut(s) 153, 733, 1126, 1257
BtgZI GCGATG 1 cut(s) 307
BtsCI GGATG 4 cut(s) 393, 745, 952, 964
BtsIMutI CAGTG 2 cut(s) 421, 783
BveI ACCTGC 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 447
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 4 cut(s) 421, 632, 710, 1244
CsiI ACCWGGT 2 cut(s) 634, 997
Csp6I GTAC 3 cut(s) 639, 806, 822
CviAII CATG 5 cut(s) 154, 308, 734, 1127, 1258
CviQI GTAC 3 cut(s) 639, 806, 822
DdeI CTNAG 2 cut(s) 290, 756
DpnI GATC 5 cut(s) 227, 320, 366, 848, 1314
DpnII GATC 5 cut(s) 225, 318, 364, 846, 1312
DriI GACNNNNNGTC 1 cut(s) 1180
EaeI YGGCCR 3 cut(s) 349, 966, 1294
Eam1104I CTCTTC 1 cut(s) 100
Eam1105I GACNNNNNGTC 1 cut(s) 1180
EarI CTCTTC 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 357
Eco130I CCWWGG 4 cut(s) 153, 733, 1126, 1257
Eco24I GRGCYC 1 cut(s) 359
Eco47I GGWCC 3 cut(s) 421, 632, 710
Eco53kI GAGCTC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 539
Eco91I GGTNACC 1 cut(s) 1223
EcoICRI GAGCTC 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 421
EcoO65I GGTNACC 1 cut(s) 1223
EcoRII CCWGG 8 cut(s) 379, 423, 628, 634, 714, 954, 997, 1246
EcoT14I CCWWGG 4 cut(s) 153, 733, 1126, 1257
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 4 cut(s) 153, 733, 1126, 1257
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 5 cut(s) 157, 311, 737, 1130, 1261
FaqI GGGAC 1 cut(s) 696
FatI CATG 5 cut(s) 153, 307, 733, 1126, 1257
FauI CCCGC 1 cut(s) 178
FbaI TGATCA 1 cut(s) 846
Fnu4HI GCNGC 7 cut(s) 287, 450, 483, 567, 602, 966, 1297
FokI GGATG 4 cut(s) 400, 752, 959, 971
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 7 cut(s) 287, 450, 483, 567, 602, 966, 1297
FspBI CTAG 4 cut(s) 573, 605, 908, 1271
GlaI GCGC 1 cut(s) 245
GluI GCNGC 7 cut(s) 287, 450, 483, 567, 602, 966, 1297
GsaI CCCAGC 1 cut(s) 1166
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 5 cut(s) 351, 890, 968, 1246, 1296
HapII CCGG 1 cut(s) 252
HhaI GCGC 1 cut(s) 246
Hin1II CATG 5 cut(s) 157, 311, 737, 1130, 1261
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 1020
HinfI GANTC 7 cut(s) 60, 474, 503, 590, 788, 799, 1070
HpaII CCGG 1 cut(s) 252
HphI GGTGA 5 cut(s) 235, 448, 730, 1095, 1225
Hpy166II GTNNAC 2 cut(s) 777, 1004
Hpy188I TCNGA 6 cut(s) 192, 208, 343, 863, 1036, 1186
Hpy188III TCNNGA 1 cut(s) 594
Hpy8I GTNNAC 2 cut(s) 777, 1004
Hpy99I CGWCG 2 cut(s) 236, 867
HpyAV CCTTC 4 cut(s) 98, 129, 172, 514
HpyCH4III ACNGT 3 cut(s) 347, 416, 880
HpyCH4V TGCA 7 cut(s) 80, 485, 578, 601, 662, 1028, 1319
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 575, 1097, 1106, 1163
HpyF3I CTNAG 2 cut(s) 290, 756
Hsp92II CATG 5 cut(s) 157, 311, 737, 1130, 1261
HspAI GCGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 846
Kzo9I GATC 5 cut(s) 225, 318, 364, 846, 1312
LmnI GCTCC 7 cut(s) 208, 254, 362, 403, 556, 957, 1088
Lsp1109I GCAGC 5 cut(s) 298, 436, 469, 578, 613
LweI GCATC 3 cut(s) 319, 578, 711
MabI ACCWGGT 2 cut(s) 634, 997
MaeI CTAG 4 cut(s) 573, 605, 908, 1271
MaeIII GTNAC 3 cut(s) 262, 619, 1223
MalI GATC 5 cut(s) 227, 320, 366, 848, 1314
MboI GATC 5 cut(s) 225, 318, 364, 846, 1312
MboII GAAGA 2 cut(s) 87, 911
MfeI CAATTG 2 cut(s) 579, 674
MflI RGATCY 1 cut(s) 1312
MhlI GDGCHC 4 cut(s) 359, 400, 954, 1018
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 6 cut(s) 560, 579, 674, 1048, 1197, 1275
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 2 cut(s) 54, 512
MmeI TCCRAC 2 cut(s) 753, 886
Mox20I TGGCCA 1 cut(s) 351
MscI TGGCCA 1 cut(s) 351
MseI TTAA 4 cut(s) 315, 408, 551, 933
MslI CAYNNNNRTG 2 cut(s) 152, 738
Msp20I TGGCCA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 8 cut(s) 381, 425, 630, 636, 716, 956, 999, 1248
MunI CAATTG 2 cut(s) 579, 674
MvaI CCWGG 8 cut(s) 381, 425, 630, 636, 716, 956, 999, 1248
MvnI CGCG 1 cut(s) 1299
MwoI GCNNNNNNNGC 5 cut(s) 170, 575, 1097, 1106, 1163
NcoI CCATGG 4 cut(s) 153, 733, 1126, 1257
NdeII GATC 5 cut(s) 225, 318, 364, 846, 1312
NlaIII CATG 5 cut(s) 157, 311, 737, 1130, 1261
NlaIV GGNNCC 3 cut(s) 189, 712, 1245
NmeAIII GCCGAG 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 262, 619
PaqCI CACCTGC 1 cut(s) 383
PfeI GAWTC 5 cut(s) 474, 590, 788, 799, 1070
PfoI TCCNGGA 3 cut(s) 423, 628, 954
PkrI GCNGC 7 cut(s) 288, 451, 484, 568, 603, 967, 1298
PleI GAGTC 2 cut(s) 54, 511
PpsI GAGTC 2 cut(s) 54, 511
PpuMI RGGWCCY 1 cut(s) 421
PshBI ATTAAT 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 359
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 8 cut(s) 379, 423, 628, 634, 714, 954, 997, 1246
PspEI GGTNACC 1 cut(s) 1223
PspFI CCCAGC 1 cut(s) 1162
PspGI CCWGG 8 cut(s) 379, 423, 628, 634, 714, 954, 997, 1246
PspN4I GGNNCC 3 cut(s) 189, 712, 1245
PspPI GGNCC 4 cut(s) 421, 632, 710, 1244
PspPPI RGGWCCY 1 cut(s) 421
PsuI RGATCY 1 cut(s) 1312
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 3 cut(s) 640, 807, 823
RsaNI GTAC 3 cut(s) 639, 806, 822
RseI CAYNNNNRTG 2 cut(s) 152, 738
SacI GAGCTC 1 cut(s) 359
SaqAI TTAA 4 cut(s) 315, 408, 551, 933
SatI GCNGC 7 cut(s) 287, 450, 483, 567, 602, 966, 1297
Sau3AI GATC 5 cut(s) 225, 318, 364, 846, 1312
Sau96I GGNCC 4 cut(s) 421, 632, 710, 1244
SchI GAGTC 2 cut(s) 54, 512
ScrFI CCNGG 8 cut(s) 381, 425, 630, 636, 716, 956, 999, 1248
SduI GDGCHC 4 cut(s) 359, 400, 954, 1018
SexAI ACCWGGT 2 cut(s) 634, 997
SfaNI GCATC 3 cut(s) 319, 578, 711
SfcI CTRYAG 2 cut(s) 489, 894
SinI GGWCC 3 cut(s) 421, 632, 710
SmiMI CAYNNNNRTG 2 cut(s) 152, 738
SmlI CTYRAG 3 cut(s) 500, 1017, 1136
SmoI CTYRAG 3 cut(s) 500, 1017, 1136
Sse9I AATT 6 cut(s) 560, 579, 674, 1048, 1197, 1275
SsiI CCGC 8 cut(s) 150, 162, 171, 221, 944, 965, 1011, 1297
SspMI CTAG 4 cut(s) 573, 605, 908, 1271
SstI GAGCTC 1 cut(s) 359
StyD4I CCNGG 8 cut(s) 379, 423, 628, 634, 714, 954, 997, 1246
StyI CCWWGG 4 cut(s) 153, 733, 1126, 1257
TaaI ACNGT 3 cut(s) 347, 416, 880
TaqI TCGA 1 cut(s) 234
TasI AATT 6 cut(s) 560, 579, 674, 1048, 1197, 1275
TauI GCSGC 2 cut(s) 968, 1299
TfiI GAWTC 5 cut(s) 474, 590, 788, 799, 1070
Tru1I TTAA 4 cut(s) 315, 408, 551, 933
Tru9I TTAA 4 cut(s) 315, 408, 551, 933
TscAI CASTG 2 cut(s) 421, 790
TseFI GTSAC 2 cut(s) 262, 619
TseI GCWGC 5 cut(s) 286, 449, 482, 566, 601
Tsp45I GTSAC 2 cut(s) 262, 619
TspDTI ATGAA 4 cut(s) 714, 756, 785, 975
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 2 cut(s) 421, 790
VpaK11BI GGWCC 3 cut(s) 421, 632, 710
VspI ATTAAT 1 cut(s) 551
XapI RAATTY 1 cut(s) 1048
XcmI CCANNNNNNNNNTGG 2 cut(s) 151, 181
XspI CTAG 4 cut(s) 573, 605, 908, 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.