Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005791

Physical Location & Seq

Genomic Coordinates Forward (+)

25627046 .. 25631394

Gene Structure 4349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG217400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCATTGCCTGGCTCATTTCTGTTGGGCTCGTCTCCCTTTATATTATGTAGCAGACTCCATCACATAACCCCTTCAACAATCCTTCTCCCTTCTCTCACTACCAAACCCATTCCTTCACTCTCTTTCTCTCTCTCCTCCACCACCGCCATGGCTTCCGCTTCTCCCGCCAAGAAGGTTCTGGTTCCGATTGCGAATGGCTCGGAGCAGATGGAGGCGGTGATCGCCGTCGATGTTCTGCGCCGAGCCGGAGCTGATGTCACTATGGCTTCTGTGGAGAAGCAGCTGAGGGTTGAGGCGTGTCATGGGGTTAAGATCATCGCTGATGCTTTGATTTCGGACTGTGGCCAGAGCTCCTTTGATCTCATTACTCTACCTGGAGGGATGCCAGGTGCTACCAATCTTAAAAACAGTGAGGTCCTGGAAAGTCTGGTGAAAAAGCAAGCTGCCGATGGGAAGCTCTATGCTGCAATCTGTGCTGCACCTGTAGTGGCACTTGAGTCTTGGGGTGTGCTGAAGGGATTGAAAGCAACTTGCTATCCATCATTAATGGAGCAATTAGCAGCATCTAGTGCAACTGCTGTTGAATCAAGAGTGCAGCTAGATGGCAAAGCTGTGACAAGTCCTGGACCTGGTACTACCATAGAGTGTGCTGTTGCACTTGTTGAGCAATTGTATGGGAAAGAGAAAGCTGATGAAGTTTCTGGTCCCCTGGTGATGCGTTCCAACCATGGGGATGAATATATCATAACTGAGCGAAACCCAATGAAGTGGACTTTCACTGATTCCCCAAAGATTCTTGTACCAATAGCTAATGGTACAGAGGAAATGGAAGCTATAATGATCATTGATATTCTCCGACGAGCCAAAGCAACTGTTGTAGTGGCCTCTGTAGAAGATAAGCTAGACATTATTGCTTCTCGCAAAGTTAAGCTGGAAGCGGATGTGCTCCTGGATGAAGCGGCCAAACTTTCGTATGACCTAATAGTTTTGCCTGTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

334

Amino Acids

35.25

Weight (kDa)

5.39

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	58 - 224	4.8e-44	DJ-1/PfpI family
DJ-1_PfpI	PF01965	265 - 332	1.5e-10	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53280 AT1G53280 AT3G14990 AT3G14990 AT3G14990
fragaria_vesca	FvH4_3g18570 FvH4_3g18570 FvH4_3g18570
malus_domestica	MD03G1241000.v1.1 MD11G1260500.v1.1
prunus_persica	Prupe.4G167800_v2.0.a1 Prupe.4G167900_v2.0.a1
pyrus_communis	pycom11g22990
rosa_chinensis	RchiOBHm_Chr5g0031321 RchiOBHm_Chr5g0031331 RchiOBHm_Chr5g0031361 RchiOBHm_Chr5g0031371
rosa_laevigata	RLG00000033301
rosa_multiflora	Rmu_sc0007782.1_g000014 Rmu_sc0018148.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048960
rosa_rugosa	Rorug05G0124300 Rorug05G0124700
rosa_samantha	Rh5AG217400 Rh5BG217100 Rh5CG240700 Rh5DG222400
rosa_wichuraiana	Rw5G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	147, 159, 168, 218, 941, 962
AcoI	YGGCCR	2 cut(s)	346, 963
AcuI	CTGAAG	1 cut(s)	536
AfaI	GTAC	3 cut(s)	637, 804, 820
AfiI	CCNNNNNNNGG	2 cut(s)	632, 732
AgsI	TTSAA	3 cut(s)	78, 526, 587
AjnI	CCWGG	8 cut(s)	10, 376, 388, 420, 625, 631, 711, 951
Alw21I	GWGCWC	2 cut(s)	356, 951
Alw26I	GTCTC	1 cut(s)	39
AoxI	GGCC	3 cut(s)	346, 885, 963
ApeKI	GCWGC	6 cut(s)	283, 446, 467, 479, 563, 598
AseI	ATTAAT	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	3 cut(s)	418, 629, 707
AsuHPI	GGTGA	3 cut(s)	232, 445, 727
AvaII	GGWCC	3 cut(s)	418, 629, 707
BalI	TGGCCA	1 cut(s)	348
BanII	GRGCYC	2 cut(s)	32, 356
Bbv12I	GWGCWC	2 cut(s)	356, 951
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	6 cut(s)	295, 433, 454, 466, 575, 610
BccI	CCATC	5 cut(s)	69, 205, 446, 550, 599
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	8 cut(s)	12, 378, 390, 422, 627, 633, 713, 953
BclI	TGATCA	1 cut(s)	843
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	3 cut(s)	570, 602, 905
BfmI	CTRYAG	2 cut(s)	486, 891
BisI	GCNGC	7 cut(s)	284, 447, 468, 480, 564, 599, 963
BlsI	GCNGC	7 cut(s)	285, 448, 469, 481, 565, 600, 964
Bme1390I	CCNGG	8 cut(s)	12, 378, 390, 422, 627, 633, 713, 953
Bme18I	GGWCC	3 cut(s)	418, 629, 707
BmgT120I	GGNCC	3 cut(s)	418, 629, 707
BmiI	GGNNCC	2 cut(s)	186, 709
BmrFI	CCNGG	8 cut(s)	12, 378, 390, 422, 627, 633, 713, 953
BmsI	GCATC	4 cut(s)	316, 375, 575, 708
BpmI	CTGGAG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	518
BsaJI	CCNNGG	3 cut(s)	150, 711, 730
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	632, 732
Bse3DI	GCAATG	1 cut(s)	5
BseBI	CCWGG	8 cut(s)	12, 378, 390, 422, 627, 633, 713, 953
BseDI	CCNNGG	3 cut(s)	150, 711, 730
BseGI	GGATG	4 cut(s)	390, 742, 949, 961
BseLI	CCNNNNNNNGG	2 cut(s)	632, 732
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	2 cut(s)	278, 744
BseRI	GAGGAG	1 cut(s)	127
BseXI	GCAGC	6 cut(s)	295, 433, 454, 466, 575, 610
BsgI	GTGCAG	2 cut(s)	465, 617
BshFI	GGCC	3 cut(s)	348, 887, 965
BsiHKAI	GWGCWC	2 cut(s)	356, 951
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	693
BslI	CCNNNNNNNGG	2 cut(s)	632, 732
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	693
BsnI	GGCC	3 cut(s)	348, 887, 965
Bsp1286I	GDGCHC	3 cut(s)	32, 356, 951
Bsp143I	GATC	4 cut(s)	222, 315, 361, 843
Bsp19I	CCATGG	2 cut(s)	150, 730
BspACI	CCGC	6 cut(s)	147, 159, 168, 218, 941, 962
BspANI	GGCC	3 cut(s)	348, 887, 965
BspCNI	CTCAG	2 cut(s)	279, 745
BspLI	GGNNCC	2 cut(s)	186, 709
BsrDI	GCAATG	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	150, 711, 730
BssMI	GATC	4 cut(s)	222, 315, 361, 843
BssT1I	CCWWGG	2 cut(s)	150, 730
Bst2UI	CCWGG	8 cut(s)	12, 378, 390, 422, 627, 633, 713, 953
Bst4CI	ACNGT	3 cut(s)	344, 413, 877
BstAPI	GCANNNNNTGC	2 cut(s)	476, 572
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	2 cut(s)	287, 753
BstDSI	CCRYGG	2 cut(s)	150, 730
BstF5I	GGATG	4 cut(s)	390, 742, 949, 961
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	4 cut(s)	225, 318, 364, 846
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	4 cut(s)	222, 315, 361, 843
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 224, 476, 572
BstNI	CCWGG	8 cut(s)	12, 378, 390, 422, 627, 633, 713, 953
BstSCI	CCNGG	8 cut(s)	10, 376, 388, 420, 625, 631, 711, 951
BstSFI	CTRYAG	2 cut(s)	486, 891
BstV1I	GCAGC	6 cut(s)	295, 433, 454, 466, 575, 610
BstXI	CCANNNNNNTGG	2 cut(s)	151, 771
BsuRI	GGCC	3 cut(s)	348, 887, 965
BtgI	CCRYGG	2 cut(s)	150, 730
BtgZI	GCGATG	1 cut(s)	304
BtsCI	GGATG	4 cut(s)	390, 742, 949, 961
BtsIMutI	CAGTG	2 cut(s)	418, 780
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	3 cut(s)	418, 629, 707
CsiI	ACCWGGT	1 cut(s)	631
Csp6I	GTAC	3 cut(s)	636, 803, 819
CviAII	CATG	3 cut(s)	151, 305, 731
CviQI	GTAC	3 cut(s)	636, 803, 819
DdeI	CTNAG	2 cut(s)	287, 753
DpnI	GATC	4 cut(s)	224, 317, 363, 845
DpnII	GATC	4 cut(s)	222, 315, 361, 843
EaeI	YGGCCR	2 cut(s)	346, 963
Ecl136II	GAGCTC	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	150, 730
Eco24I	GRGCYC	2 cut(s)	32, 356
Eco47I	GGWCC	3 cut(s)	418, 629, 707
Eco53kI	GAGCTC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRII	CCWGG	8 cut(s)	10, 376, 388, 420, 625, 631, 711, 951
EcoT14I	CCWWGG	2 cut(s)	150, 730
EcoT38I	GRGCYC	2 cut(s)	32, 356
ErhI	CCWWGG	2 cut(s)	150, 730
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	3 cut(s)	154, 308, 734
FaqI	GGGAC	1 cut(s)	693
FatI	CATG	3 cut(s)	150, 304, 730
FauI	CCCGC	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	843
Fnu4HI	GCNGC	7 cut(s)	284, 447, 468, 480, 564, 599, 963
FokI	GGATG	4 cut(s)	397, 749, 956, 968
FriOI	GRGCYC	2 cut(s)	32, 356
Fsp4HI	GCNGC	7 cut(s)	284, 447, 468, 480, 564, 599, 963
FspBI	CTAG	3 cut(s)	570, 602, 905
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	7 cut(s)	284, 447, 468, 480, 564, 599, 963
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	3 cut(s)	348, 887, 965
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	154, 308, 734
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	5 cut(s)	57, 500, 587, 785, 796
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	3 cut(s)	232, 445, 727
Hpy166II	GTNNAC	1 cut(s)	774
Hpy188I	TCNGA	4 cut(s)	189, 205, 340, 860
Hpy188III	TCNNGA	1 cut(s)	591
Hpy8I	GTNNAC	1 cut(s)	774
Hpy99I	CGWCG	2 cut(s)	233, 864
HpyAV	CCTTC	6 cut(s)	84, 95, 102, 126, 169, 511
HpyCH4III	ACNGT	3 cut(s)	344, 413, 877
HpyCH4V	TGCA	5 cut(s)	470, 482, 575, 598, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 224, 476, 572
HpyF3I	CTNAG	2 cut(s)	287, 753
Hsp92II	CATG	3 cut(s)	154, 308, 734
HspAI	GCGC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	843
Kzo9I	GATC	4 cut(s)	222, 315, 361, 843
LmnI	GCTCC	5 cut(s)	205, 251, 359, 553, 954
Lsp1109I	GCAGC	6 cut(s)	295, 433, 454, 466, 575, 610
LweI	GCATC	4 cut(s)	316, 375, 575, 708
MabI	ACCWGGT	1 cut(s)	631
MaeI	CTAG	3 cut(s)	570, 602, 905
MaeIII	GTNAC	2 cut(s)	259, 616
MalI	GATC	4 cut(s)	224, 317, 363, 845
MboI	GATC	4 cut(s)	222, 315, 361, 843
MboII	GAAGA	1 cut(s)	908
MfeI	CAATTG	1 cut(s)	671
MhlI	GDGCHC	3 cut(s)	32, 356, 951
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	2 cut(s)	557, 671
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	2 cut(s)	51, 509
MmeI	TCCRAC	2 cut(s)	750, 883
MnlI	CCTC	8 cut(s)	148, 208, 282, 289, 374, 409, 817, 898
Mox20I	TGGCCA	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	4 cut(s)	312, 405, 548, 930
MslI	CAYNNNNRTG	2 cut(s)	149, 735
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	8 cut(s)	12, 378, 390, 422, 627, 633, 713, 953
MunI	CAATTG	1 cut(s)	671
MvaI	CCWGG	8 cut(s)	12, 378, 390, 422, 627, 633, 713, 953
MwoI	GCNNNNNNNGC	4 cut(s)	167, 224, 476, 572
NcoI	CCATGG	2 cut(s)	150, 730
NdeII	GATC	4 cut(s)	222, 315, 361, 843
NlaIII	CATG	3 cut(s)	154, 308, 734
NlaIV	GGNNCC	2 cut(s)	186, 709
NmeAIII	GCCGAG	1 cut(s)	269
NmuCI	GTSAC	2 cut(s)	259, 616
PfeI	GAWTC	3 cut(s)	587, 785, 796
PfoI	TCCNGGA	3 cut(s)	420, 625, 951
PkrI	GCNGC	7 cut(s)	285, 448, 469, 481, 565, 600, 964
PleI	GAGTC	2 cut(s)	51, 508
PpsI	GAGTC	2 cut(s)	51, 508
PpuMI	RGGWCCY	1 cut(s)	418
PshBI	ATTAAT	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	8 cut(s)	10, 376, 388, 420, 625, 631, 711, 951
PspGI	CCWGG	8 cut(s)	10, 376, 388, 420, 625, 631, 711, 951
PspN4I	GGNNCC	2 cut(s)	186, 709
PspPI	GGNCC	3 cut(s)	418, 629, 707
PspPPI	RGGWCCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	3 cut(s)	637, 804, 820
RsaNI	GTAC	3 cut(s)	636, 803, 819
RseI	CAYNNNNRTG	2 cut(s)	149, 735
SacI	GAGCTC	1 cut(s)	356
SaqAI	TTAA	4 cut(s)	312, 405, 548, 930
SatI	GCNGC	7 cut(s)	284, 447, 468, 480, 564, 599, 963
Sau3AI	GATC	4 cut(s)	222, 315, 361, 843
Sau96I	GGNCC	3 cut(s)	418, 629, 707
SchI	GAGTC	2 cut(s)	51, 509
ScrFI	CCNGG	8 cut(s)	12, 378, 390, 422, 627, 633, 713, 953
SduI	GDGCHC	3 cut(s)	32, 356, 951
SexAI	ACCWGGT	1 cut(s)	631
SfaNI	GCATC	4 cut(s)	316, 375, 575, 708
SfcI	CTRYAG	2 cut(s)	486, 891
SinI	GGWCC	3 cut(s)	418, 629, 707
SmiMI	CAYNNNNRTG	2 cut(s)	149, 735
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	2 cut(s)	557, 671
SsiI	CCGC	6 cut(s)	147, 159, 168, 218, 941, 962
SspMI	CTAG	3 cut(s)	570, 602, 905
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	8 cut(s)	10, 376, 388, 420, 625, 631, 711, 951
StyI	CCWWGG	2 cut(s)	150, 730
TaaI	ACNGT	3 cut(s)	344, 413, 877
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	557, 671
TauI	GCSGC	1 cut(s)	965
TfiI	GAWTC	3 cut(s)	587, 785, 796
Tru1I	TTAA	4 cut(s)	312, 405, 548, 930
Tru9I	TTAA	4 cut(s)	312, 405, 548, 930
TscAI	CASTG	2 cut(s)	418, 787
TseFI	GTSAC	2 cut(s)	259, 616
TseI	GCWGC	6 cut(s)	283, 446, 467, 479, 563, 598
Tsp45I	GTSAC	2 cut(s)	259, 616
TspDTI	ATGAA	4 cut(s)	711, 753, 782, 972
TspRI	CASTG	2 cut(s)	418, 787
VpaK11BI	GGWCC	3 cut(s)	418, 629, 707
VspI	ATTAAT	1 cut(s)	548
XcmI	CCANNNNNNNNNTGG	2 cut(s)	148, 178
XspI	CTAG	3 cut(s)	570, 602, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.