MD03G1241000.v1.1

Protein DJ-1 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
32604761 .. 32608567
3807 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1241000.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGGCTTCCGATTCTCCTGCTAAGAAGGTTTTGGTTCCGATTGCGAACGGCACGGAGCCGATTGAGGCGGTGATCACCGTCGATGTTCTGCGGCGAGCTGGGGCCGATGTTACTGTGGCTTCTGTGGAGAAGCAGCTTCGGGTTGATGGTTACCACGGCGTTAAGATCGTCGCTGATGCTTTGATTTCGGATTGTAGCCAAACTGTCTTCGATCTCATCGCTCTACCCGGTGGCATCCCTGGTGCCGCTAATCTTAAGAATAGTGAGGTTCTGGAAAGCTTGGTGAAGAAGCAGGCTGCAGATGGGAAGCTGTACGCCGCAATCTGTGCTTCACCTGCAGTGGCACTTGCGTCATGGGGCGTGTTGAAGGGACTGAAAGCAACTTGTTATCCACCTTTTATGGAGCAATTAGCATCTGGTGCAACCGCTGTTGAATCAAGAGTGCAGGTGGATGGCAAAGTTGTGACAAGTAGTGGACTTGGTACTACCATGGAGTTTGCTGTTGCACTGGTCGAGCAATTGTATGGGAAAGAAAAAGCTGATGAAGTTTCTGGGCCACTGGTGATGCGTTCCAACCATGGGGATGAATATGTCATAACCGAGCTAAACCCAGTTGAGTGGACTGCCAGTGATTCCCCTAAGATTCTTGTACCTATTGCGAATGGCACAGAGGAAATGGAAGCTATTATAATCATTGATATTCTACGATGGGCCAAAGCAGATGTTGTGGTGGCCTCTGTAGAGGATAAACTAGAAATTATTGCTTCCCGCAAAGTTAAACTGGAGGCAGATATGTCCCTCGATGAAGCTACCAAACTTTCGTATGACCTGATTGTCTTGCCTGGTGGACTTGGTGGTGCCCAAGCATTTGCAAAATCGGAAAAGCTCATGAATTTGTTAAAAAAGCAGAGGGTATCACAGAGACCTTATGGAGCAATATGTGCCTCCCCAGCTCTAGTTTTGGAACCCCATGCCCTACTCAAGGGCAAAAAGGCGACAGCGTTCCCCGCAATGTGCGACAAGCTGTCAGATAAAAGTGAAATCGAGAACAGGGTAGTGGTTGACGGCAACCTCATCACCAGTAGAGGACCAGGAACTTCAATGGAGTTCGCTTTTGGAATTGTTGAGAAGTTTCTTGGCCGCAAGAAAGCAATAGAGCTCGCGAAAGTCCTTCTTTTCGTTCATCCTTAG

Protein Analysis

397

Amino Acids

42.03

Weight (kDa)

5.63

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 8 - 173 3.5e-46 DJ-1/PfpI family
DJ-1_PfpI PF01965 214 - 376 3.4e-42 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 689
AarI CACCTGC 2 cut(s) 343, 436
AasI GACNNNNNNGTC 1 cut(s) 833
Acc36I ACCTGC 2 cut(s) 343, 436
AccB1I GGYRCC 2 cut(s) 242, 857
AccII CGCG 1 cut(s) 1163
AciI CCGC 8 cut(s) 68, 91, 246, 318, 426, 769, 1008, 1141
AcoI YGGCCR 1 cut(s) 1138
AcsI RAATTY 1 cut(s) 892
AfaI GTAC 3 cut(s) 314, 484, 651
AfiI CCNNNNNNNGG 2 cut(s) 579, 982
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 3 cut(s) 367, 434, 1101
AhdI GACNNNNNGTC 1 cut(s) 1024
AjnI CCWGG 3 cut(s) 238, 841, 1090
Alw21I GWGCWC 1 cut(s) 1161
Alw26I GTCTC 1 cut(s) 916
AoxI GGCC 5 cut(s) 102, 554, 711, 732, 1138
ApeKI GCWGC 2 cut(s) 133, 296
ApoI RAATTY 1 cut(s) 892
AspS9I GGNCC 4 cut(s) 102, 554, 711, 1088
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 6 cut(s) 67, 82, 295, 324, 574, 1069
AvaII GGWCC 1 cut(s) 1088
BaeGI GKGCMC 1 cut(s) 862
BanI GGYRCC 2 cut(s) 242, 857
BanII GRGCYC 1 cut(s) 1161
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 1161
BbvI GCAGC 2 cut(s) 145, 283
BccI CCATC 4 cut(s) 140, 296, 446, 702
BceAI ACGGC 3 cut(s) 64, 172, 1081
BcgI CGANNNNNNTGC 1 cut(s) 33
BciT130I CCWGG 3 cut(s) 240, 843, 1092
BclI TGATCA 1 cut(s) 72
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 916
BfaI CTAG 2 cut(s) 752, 956
BfmI CTRYAG 3 cut(s) 297, 336, 738
BfrI CTTAAG 1 cut(s) 254
BfuAI ACCTGC 2 cut(s) 343, 436
BisI GCNGC 6 cut(s) 92, 134, 246, 297, 318, 1141
BlsI GCNGC 6 cut(s) 93, 135, 247, 298, 319, 1142
Bme1390I CCNGG 4 cut(s) 228, 240, 843, 1092
Bme18I GGWCC 1 cut(s) 1088
BmeRI GACNNNNNGTC 1 cut(s) 1024
BmgT120I GGNCC 4 cut(s) 102, 554, 711, 1088
BmiI GGNNCC 6 cut(s) 36, 57, 103, 244, 859, 966
BmrFI CCNGG 4 cut(s) 228, 240, 843, 1092
BmrI ACTGGG 1 cut(s) 605
BmsI GCATC 4 cut(s) 166, 243, 422, 555
BmuI ACTGGG 1 cut(s) 605
BpiI GAAGAC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 803
BpuEI CTTGAG 1 cut(s) 965
BpuMI CCSGG 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 916
BsaJI CCNNGG 4 cut(s) 154, 238, 489, 577
Bsc4I CCNNNNNNNGG 2 cut(s) 579, 982
Bse1I ACTGG 6 cut(s) 513, 564, 611, 627, 786, 1080
Bse3DI GCAATG 1 cut(s) 1017
BseBI CCWGG 3 cut(s) 240, 843, 1092
BseDI CCNNGG 4 cut(s) 154, 238, 489, 577
BseGI GGATG 4 cut(s) 234, 457, 589, 1183
BseLI CCNNNNNNNGG 2 cut(s) 579, 982
BseMI GCAATG 1 cut(s) 1017
BseNI ACTGG 6 cut(s) 513, 564, 611, 627, 786, 1080
BseSI GKGCMC 1 cut(s) 862
BseXI GCAGC 2 cut(s) 145, 283
BseYI CCCAGC 2 cut(s) 98, 949
BsgI GTGCAG 1 cut(s) 464
Bsh1236I CGCG 1 cut(s) 1163
BshFI GGCC 5 cut(s) 104, 556, 713, 734, 1140
BshNI GGYRCC 2 cut(s) 242, 857
BsiHKAI GWGCWC 1 cut(s) 1161
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 384, 781
BslI CCNNNNNNNGG 2 cut(s) 579, 982
BsmAI GTCTC 1 cut(s) 916
BsmFI GGGAC 2 cut(s) 384, 781
BsnI GGCC 5 cut(s) 104, 556, 713, 734, 1140
Bso31I GGTCTC 1 cut(s) 916
Bsp1286I GDGCHC 2 cut(s) 862, 1161
Bsp143I GATC 3 cut(s) 72, 165, 211
Bsp19I CCATGG 2 cut(s) 489, 577
Bsp68I TCGCGA 1 cut(s) 1163
BspACI CCGC 8 cut(s) 68, 91, 246, 318, 426, 769, 1008, 1141
BspANI GGCC 5 cut(s) 104, 556, 713, 734, 1140
BspFNI CGCG 1 cut(s) 1163
BspHI TCATGA 1 cut(s) 888
BspLI GGNNCC 6 cut(s) 36, 57, 103, 244, 859, 966
BspMAI CTGCAG 2 cut(s) 301, 340
BspMI ACCTGC 2 cut(s) 343, 436
BspT107I GGYRCC 2 cut(s) 242, 857
BspTI CTTAAG 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 916
BsrDI GCAATG 1 cut(s) 1017
BsrI ACTGG 6 cut(s) 513, 564, 611, 627, 786, 1080
BssECI CCNNGG 4 cut(s) 154, 238, 489, 577
BssMI GATC 3 cut(s) 72, 165, 211
BssT1I CCWWGG 2 cut(s) 489, 577
Bst2UI CCWGG 3 cut(s) 240, 843, 1092
Bst4CI ACNGT 3 cut(s) 79, 115, 205
BstAFI CTTAAG 1 cut(s) 254
BstAPI GCANNNNNTGC 3 cut(s) 326, 419, 941
BstC8I GCNNGC 3 cut(s) 96, 294, 1161
BstDEI CTNAG 3 cut(s) 21, 639, 1188
BstDSI CCRYGG 3 cut(s) 154, 489, 577
BstEII GGTNACC 1 cut(s) 149
BstENI CCTNNNNNAGG 1 cut(s) 980
BstF5I GGATG 4 cut(s) 234, 457, 589, 1183
BstFNI CGCG 1 cut(s) 1163
BstKTI GATC 3 cut(s) 75, 168, 214
BstMAI GTCTC 1 cut(s) 916
BstMBI GATC 3 cut(s) 72, 165, 211
BstMWI GCNNNNNNNGC 6 cut(s) 326, 335, 419, 941, 950, 1007
BstNI CCWGG 3 cut(s) 240, 843, 1092
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 4 cut(s) 226, 238, 841, 1090
BstSFI CTRYAG 3 cut(s) 297, 336, 738
BstSLI GKGCMC 1 cut(s) 862
BstUI CGCG 1 cut(s) 1163
BstV1I GCAGC 2 cut(s) 145, 283
BstV2I GAAGAC 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 618
BsuRI GGCC 5 cut(s) 104, 556, 713, 734, 1140
BtgI CCRYGG 3 cut(s) 154, 489, 577
BtgZI GCGATG 1 cut(s) 202
BtsCI GGATG 4 cut(s) 234, 457, 589, 1183
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 4 cut(s) 345, 506, 557, 634
BtuMI TCGCGA 1 cut(s) 1163
BveI ACCTGC 2 cut(s) 343, 436
Cac8I GCNNGC 3 cut(s) 96, 294, 1161
CciI TCATGA 1 cut(s) 888
Cfr13I GGNCC 4 cut(s) 102, 554, 711, 1088
CseI GACGC 1 cut(s) 339
Csp6I GTAC 3 cut(s) 313, 483, 650
CviAII CATG 5 cut(s) 354, 490, 578, 889, 971
CviQI GTAC 3 cut(s) 313, 483, 650
DdeI CTNAG 3 cut(s) 21, 639, 1188
DpnI GATC 3 cut(s) 74, 167, 213
DpnII GATC 3 cut(s) 72, 165, 211
DrdI GACNNNNNNGTC 1 cut(s) 833
DriI GACNNNNNGTC 1 cut(s) 1024
DseDI GACNNNNNNGTC 1 cut(s) 833
EaeI YGGCCR 1 cut(s) 1138
Eam1105I GACNNNNNGTC 1 cut(s) 1024
Ecl136II GAGCTC 1 cut(s) 1159
Eco130I CCWWGG 2 cut(s) 489, 577
Eco24I GRGCYC 1 cut(s) 1161
Eco31I GGTCTC 1 cut(s) 916
Eco47I GGWCC 1 cut(s) 1088
Eco53kI GAGCTC 1 cut(s) 1159
Eco91I GGTNACC 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 1159
EcoNI CCTNNNNNAGG 1 cut(s) 980
EcoO65I GGTNACC 1 cut(s) 149
EcoRII CCWGG 3 cut(s) 238, 841, 1090
EcoT14I CCWWGG 2 cut(s) 489, 577
EcoT38I GRGCYC 1 cut(s) 1161
ErhI CCWWGG 2 cut(s) 489, 577
FaeI CATG 5 cut(s) 357, 493, 581, 892, 974
FalI AAGNNNNNCTT 2 cut(s) 1158, 1190
FaqI GGGAC 2 cut(s) 384, 781
FatI CATG 5 cut(s) 353, 489, 577, 888, 970
FauI CCCGC 2 cut(s) 776, 1015
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 6 cut(s) 92, 134, 246, 297, 318, 1141
FokI GGATG 4 cut(s) 221, 464, 596, 1170
FriOI GRGCYC 1 cut(s) 1161
Fsp4HI GCNGC 6 cut(s) 92, 134, 246, 297, 318, 1141
FspBI CTAG 2 cut(s) 752, 956
GluI GCNGC 6 cut(s) 92, 134, 246, 297, 318, 1141
GsaI CCCAGC 2 cut(s) 102, 953
GsuI CTGGAG 1 cut(s) 803
HaeIII GGCC 5 cut(s) 104, 556, 713, 734, 1140
HapII CCGG 1 cut(s) 228
HgaI GACGC 1 cut(s) 339
Hin1II CATG 5 cut(s) 357, 493, 581, 892, 974
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 4 cut(s) 11, 434, 632, 643
HpaII CCGG 1 cut(s) 228
HphI GGTGA 6 cut(s) 67, 82, 295, 324, 574, 1069
Hpy166II GTNNAC 4 cut(s) 476, 621, 848, 1063
Hpy188I TCNGA 5 cut(s) 10, 39, 190, 880, 1030
Hpy188III TCNNGA 5 cut(s) 272, 438, 889, 1045, 1162
Hpy8I GTNNAC 4 cut(s) 476, 621, 848, 1063
Hpy99I CGWCG 2 cut(s) 83, 173
HpyAV CCTTC 3 cut(s) 19, 361, 1181
HpyCH4III ACNGT 3 cut(s) 79, 115, 205
HpyCH4V TGCA 6 cut(s) 299, 338, 422, 445, 506, 872
HpyF10VI GCNNNNNNNGC 6 cut(s) 326, 335, 419, 941, 950, 1007
HpyF3I CTNAG 3 cut(s) 21, 639, 1188
Hsp92II CATG 5 cut(s) 357, 493, 581, 892, 974
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 3 cut(s) 72, 165, 211
LmnI GCTCC 3 cut(s) 55, 403, 932
Lsp1109I GCAGC 2 cut(s) 145, 283
LweI GCATC 4 cut(s) 166, 243, 422, 555
MaeI CTAG 2 cut(s) 752, 956
MaeIII GTNAC 3 cut(s) 109, 149, 463
MalI GATC 3 cut(s) 74, 167, 213
MboI GATC 3 cut(s) 72, 165, 211
MboII GAAGA 2 cut(s) 199, 298
MfeI CAATTG 1 cut(s) 518
MhlI GDGCHC 2 cut(s) 862, 1161
MluCI AATT 5 cut(s) 407, 518, 756, 892, 1119
MmeI TCCRAC 1 cut(s) 597
MseI TTAA 4 cut(s) 162, 255, 777, 899
MslI CAYNNNNRTG 1 cut(s) 582
MspA1I CMGCKG 1 cut(s) 428
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 4 cut(s) 228, 240, 843, 1092
MunI CAATTG 1 cut(s) 518
MvaI CCWGG 3 cut(s) 240, 843, 1092
MvnI CGCG 1 cut(s) 1163
MwoI GCNNNNNNNGC 6 cut(s) 326, 335, 419, 941, 950, 1007
NciI CCSGG 1 cut(s) 228
NcoI CCATGG 2 cut(s) 489, 577
NdeII GATC 3 cut(s) 72, 165, 211
NlaIII CATG 5 cut(s) 357, 493, 581, 892, 974
NlaIV GGNNCC 6 cut(s) 36, 57, 103, 244, 859, 966
NmuCI GTSAC 1 cut(s) 463
NruI TCGCGA 1 cut(s) 1163
PagI TCATGA 1 cut(s) 888
PaqCI CACCTGC 2 cut(s) 343, 436
PfeI GAWTC 4 cut(s) 11, 434, 632, 643
PkrI GCNGC 6 cut(s) 93, 135, 247, 298, 319, 1142
PsiI TTATAA 1 cut(s) 689
Psp124BI GAGCTC 1 cut(s) 1161
Psp6I CCWGG 3 cut(s) 238, 841, 1090
PspEI GGTNACC 1 cut(s) 149
PspFI CCCAGC 2 cut(s) 98, 949
PspGI CCWGG 3 cut(s) 238, 841, 1090
PspN4I GGNNCC 6 cut(s) 36, 57, 103, 244, 859, 966
PspPI GGNCC 4 cut(s) 102, 554, 711, 1088
PstI CTGCAG 2 cut(s) 301, 340
RruI TCGCGA 1 cut(s) 1163
RsaI GTAC 3 cut(s) 314, 484, 651
RsaNI GTAC 3 cut(s) 313, 483, 650
RseI CAYNNNNRTG 1 cut(s) 582
SacI GAGCTC 1 cut(s) 1161
SaqAI TTAA 4 cut(s) 162, 255, 777, 899
SatI GCNGC 6 cut(s) 92, 134, 246, 297, 318, 1141
Sau3AI GATC 3 cut(s) 72, 165, 211
Sau96I GGNCC 4 cut(s) 102, 554, 711, 1088
ScrFI CCNGG 4 cut(s) 228, 240, 843, 1092
SduI GDGCHC 2 cut(s) 862, 1161
SfaNI GCATC 4 cut(s) 166, 243, 422, 555
SfcI CTRYAG 3 cut(s) 297, 336, 738
SinI GGWCC 1 cut(s) 1088
SmiMI CAYNNNNRTG 1 cut(s) 582
SmlI CTYRAG 2 cut(s) 254, 980
SmoI CTYRAG 2 cut(s) 254, 980
Sse9I AATT 5 cut(s) 407, 518, 756, 892, 1119
SsiI CCGC 8 cut(s) 68, 91, 246, 318, 426, 769, 1008, 1141
SspMI CTAG 2 cut(s) 752, 956
SstI GAGCTC 1 cut(s) 1161
StyD4I CCNGG 4 cut(s) 226, 238, 841, 1090
StyI CCWWGG 2 cut(s) 489, 577
TaaI ACNGT 3 cut(s) 79, 115, 205
TaqI TCGA 5 cut(s) 81, 210, 513, 801, 1044
TasI AATT 5 cut(s) 407, 518, 756, 892, 1119
TauI GCSGC 4 cut(s) 94, 248, 320, 1143
TfiI GAWTC 4 cut(s) 11, 434, 632, 643
Tru1I TTAA 4 cut(s) 162, 255, 777, 899
Tru9I TTAA 4 cut(s) 162, 255, 777, 899
TscAI CASTG 4 cut(s) 345, 513, 564, 634
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 2 cut(s) 133, 296
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 5 cut(s) 558, 600, 819, 905, 1172
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 4 cut(s) 345, 513, 564, 634
Vha464I CTTAAG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 1088
XagI CCTNNNNNAGG 1 cut(s) 980
XapI RAATTY 1 cut(s) 892
XspI CTAG 2 cut(s) 752, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.