Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005791

Physical Location & Seq

Genomic Coordinates Forward (+)

24931734 .. 24935273

Gene Structure 3540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31060

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGGAAGCCTTTTATCTATCTGTACTTTCGTTGTTCTATCTTCAGGAGTTTCTGAAGTGTGCATTATTGGGAGGGATGGCAGGTGCTCCCAATCTTAAAAACAGTGAGGTCCTGGAAAGTCTGGTGAAAAAGCAAGCTGCCGATGGGAAGCTCTATGCTGCAATCTGTGCTGCACCTGTAGTGGCACTTGAGTCTTGGGGTGTGCTGAAGGGATTGAAAGCAACTTGCTATCCATCATTAATGGAGCAATTAGCAGCATCTAGTGCAACTGCTGTTGAATCAAGAGTGCAGCTAGATGGCAAAGCTGTGACAAGTCCTGGACCTGGTACTACCATAGAGTTTGCTGTTGCACTTGTTGAGCAATTGTATGGGAAAGAGAAAGCTGATGAAGTTTCTGGTCCCCTGGTGATGCGTTCCAACCATGGGGATGAATATATCATAACTGAGCGAAACCCAATGAAGTGGACTTTCACTGATTCCCCAAAGATTCTTGTACCAATAGCTAATGGTACAGAGGAAATGGAAGCTATAATGATCATTGATATTCTCCGACGAGCCAAAGCAACTGTTGTAGTGGCCTCTGTAGAAGATAAGCTAGACATTATTGCTTCTCGCAAAGTTAAGCTGGAAGCGGATGTGCTCCTGGATGAAGCGGCCAAACTTTCGTATGACCTAATAGTTTTACCTGGTGGACTTGGCGGTGCTCAAGCTTTTGCAAAATCAGAAACACTTGTGAATTTATTGAAAAAGCAGAGGGAATCAAATAAGCCTTATGGAGCTATATGTGCTTCACCAGCTTTAGTCTTTGAACCCCATGGCTTACTCAAGGGAAAAAAGGCTACTGCTTTCCCGGCAATGTGCGACAAGCTGTCAGATAAGAGTGAAATTGAAAATAGGGTATTGGTTGATGGTAACCTCATCACCAGCAGGGGGCCAGGAACTTCCATGGAGTTTGCTCTAGGAATTGTTGAGAAGTTTTTTGGCCGCGAAAAAGCAATAGAGCTTGCAAAAGTTCTGGTTTTTGTTCGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

345

Amino Acids

37.12

Weight (kDa)

5.72

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	22 - 122	1.8e-24	DJ-1/PfpI family
DJ-1_PfpI	PF01965	163 - 325	1.9e-42	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53280 AT1G53280 AT3G14990 AT3G14990 AT3G14990
fragaria_vesca	FvH4_3g18570 FvH4_3g18570 FvH4_3g18570
malus_domestica	MD03G1241000.v1.1 MD11G1260500.v1.1
prunus_persica	Prupe.4G167800_v2.0.a1 Prupe.4G167900_v2.0.a1
pyrus_communis	pycom11g22990
rosa_chinensis	RchiOBHm_Chr5g0031321 RchiOBHm_Chr5g0031331 RchiOBHm_Chr5g0031361 RchiOBHm_Chr5g0031371
rosa_laevigata	RLG00000033301
rosa_multiflora	Rmu_sc0007782.1_g000014 Rmu_sc0018148.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048960
rosa_rugosa	Rorug05G0124300 Rorug05G0124700
rosa_samantha	Rh5AG217400 Rh5BG217100 Rh5CG240700 Rh5DG222400
rosa_wichuraiana	Rw5G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	74
AccII	CGCG	1 cut(s)	990
AciI	CCGC	4 cut(s)	635, 656, 702, 988
AcoI	YGGCCR	2 cut(s)	657, 985
AcsI	RAATTY	1 cut(s)	739
AcuI	CTGAAG	3 cut(s)	29, 77, 230
AfaI	GTAC	4 cut(s)	27, 331, 498, 514
AfiI	CCNNNNNNNGG	3 cut(s)	326, 426, 933
AgsI	TTSAA	5 cut(s)	220, 281, 748, 812, 893
AhdI	GACNNNNNGTC	1 cut(s)	871
AjnI	CCWGG	7 cut(s)	114, 319, 325, 405, 645, 688, 937
Alw21I	GWGCWC	3 cut(s)	91, 645, 709
AoxI	GGCC	4 cut(s)	579, 657, 935, 985
ApeKI	GCWGC	5 cut(s)	140, 161, 173, 257, 292
ApoI	RAATTY	1 cut(s)	739
AseI	ATTAAT	1 cut(s)	242
AspS9I	GGNCC	4 cut(s)	112, 323, 401, 935
AsuC2I	CCSGG	1 cut(s)	854
AsuHPI	GGTGA	4 cut(s)	139, 421, 786, 916
AvaII	GGWCC	3 cut(s)	112, 323, 401
Bbv12I	GWGCWC	3 cut(s)	91, 645, 709
BbvI	GCAGC	5 cut(s)	127, 148, 160, 269, 304
BccI	CCATC	5 cut(s)	73, 140, 244, 293, 905
BciT130I	CCWGG	7 cut(s)	116, 321, 327, 407, 647, 690, 939
BclI	TGATCA	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	854
BfaI	CTAG	4 cut(s)	264, 296, 599, 962
BfmI	CTRYAG	2 cut(s)	180, 585
BfuAI	ACCTGC	1 cut(s)	74
BisI	GCNGC	7 cut(s)	141, 162, 174, 258, 293, 657, 988
BlsI	GCNGC	7 cut(s)	142, 163, 175, 259, 294, 658, 989
Bme1390I	CCNGG	8 cut(s)	116, 321, 327, 407, 647, 690, 854, 939
Bme18I	GGWCC	3 cut(s)	112, 323, 401
BmeRI	GACNNNNNGTC	1 cut(s)	871
BmgT120I	GGNCC	4 cut(s)	112, 323, 401, 935
BmiI	GGNNCC	2 cut(s)	403, 936
BmrFI	CCNGG	8 cut(s)	116, 321, 327, 407, 647, 690, 854, 939
BmsI	GCATC	2 cut(s)	269, 402
BpuEI	CTTGAG	3 cut(s)	212, 693, 812
BpuMI	CCSGG	1 cut(s)	854
BsaJI	CCNNGG	4 cut(s)	405, 424, 817, 948
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 426, 933
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	7 cut(s)	116, 321, 327, 407, 647, 690, 939
BseDI	CCNNGG	4 cut(s)	405, 424, 817, 948
BseGI	GGATG	4 cut(s)	84, 436, 643, 655
BseLI	CCNNNNNNNGG	3 cut(s)	326, 426, 933
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	1 cut(s)	438
BseXI	GCAGC	5 cut(s)	127, 148, 160, 269, 304
BsgI	GTGCAG	2 cut(s)	159, 311
Bsh1236I	CGCG	1 cut(s)	990
BshFI	GGCC	4 cut(s)	581, 659, 937, 987
BsiHKAI	GWGCWC	3 cut(s)	91, 645, 709
BsiSI	CCGG	1 cut(s)	854
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	3 cut(s)	326, 426, 933
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	4 cut(s)	581, 659, 937, 987
Bsp1286I	GDGCHC	3 cut(s)	91, 645, 709
Bsp143I	GATC	1 cut(s)	537
Bsp19I	CCATGG	3 cut(s)	424, 817, 948
BspACI	CCGC	4 cut(s)	635, 656, 702, 988
BspANI	GGCC	4 cut(s)	581, 659, 937, 987
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	990
BspLI	GGNNCC	2 cut(s)	403, 936
BspMI	ACCTGC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	864
BssECI	CCNNGG	4 cut(s)	405, 424, 817, 948
BssMI	GATC	1 cut(s)	537
BssT1I	CCWWGG	3 cut(s)	424, 817, 948
Bst2UI	CCWGG	7 cut(s)	116, 321, 327, 407, 647, 690, 939
Bst4CI	ACNGT	2 cut(s)	107, 571
BstAPI	GCANNNNNTGC	2 cut(s)	170, 266
BstC8I	GCNNGC	2 cut(s)	138, 1008
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	3 cut(s)	424, 817, 948
BstEII	GGTNACC	1 cut(s)	914
BstF5I	GGATG	4 cut(s)	84, 436, 643, 655
BstFNI	CGCG	1 cut(s)	990
BstKTI	GATC	1 cut(s)	540
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 266, 788, 797, 854
BstNI	CCWGG	7 cut(s)	116, 321, 327, 407, 647, 690, 939
BstPI	GGTNACC	1 cut(s)	914
BstSCI	CCNGG	8 cut(s)	114, 319, 325, 405, 645, 688, 852, 937
BstSFI	CTRYAG	2 cut(s)	180, 585
BstUI	CGCG	1 cut(s)	990
BstV1I	GCAGC	5 cut(s)	127, 148, 160, 269, 304
BstXI	CCANNNNNNTGG	1 cut(s)	465
BsuRI	GGCC	4 cut(s)	581, 659, 937, 987
BtgI	CCRYGG	3 cut(s)	424, 817, 948
BtsCI	GGATG	4 cut(s)	84, 436, 643, 655
BtsIMutI	CAGTG	2 cut(s)	112, 474
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	2 cut(s)	138, 1008
Cfr13I	GGNCC	4 cut(s)	112, 323, 401, 935
CsiI	ACCWGGT	2 cut(s)	325, 688
Csp6I	GTAC	4 cut(s)	26, 330, 497, 513
CviAII	CATG	3 cut(s)	425, 818, 949
CviQI	GTAC	4 cut(s)	26, 330, 497, 513
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
DriI	GACNNNNNGTC	1 cut(s)	871
EaeI	YGGCCR	2 cut(s)	657, 985
Eam1105I	GACNNNNNGTC	1 cut(s)	871
Eco130I	CCWWGG	3 cut(s)	424, 817, 948
Eco47I	GGWCC	3 cut(s)	112, 323, 401
Eco57I	CTGAAG	3 cut(s)	29, 77, 230
Eco91I	GGTNACC	1 cut(s)	914
EcoO109I	RGGNCCY	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	914
EcoRII	CCWGG	7 cut(s)	114, 319, 325, 405, 645, 688, 937
EcoT14I	CCWWGG	3 cut(s)	424, 817, 948
ErhI	CCWWGG	3 cut(s)	424, 817, 948
FaeI	CATG	3 cut(s)	428, 821, 952
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	3 cut(s)	424, 817, 948
FbaI	TGATCA	1 cut(s)	537
Fnu4HI	GCNGC	7 cut(s)	141, 162, 174, 258, 293, 657, 988
FokI	GGATG	4 cut(s)	91, 443, 650, 662
Fsp4HI	GCNGC	7 cut(s)	141, 162, 174, 258, 293, 657, 988
FspBI	CTAG	4 cut(s)	264, 296, 599, 962
GluI	GCNGC	7 cut(s)	141, 162, 174, 258, 293, 657, 988
HaeIII	GGCC	4 cut(s)	581, 659, 937, 987
HapII	CCGG	1 cut(s)	854
Hin1II	CATG	3 cut(s)	428, 821, 952
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	5 cut(s)	194, 281, 479, 490, 761
HpaII	CCGG	1 cut(s)	854
HphI	GGTGA	4 cut(s)	139, 421, 786, 916
Hpy166II	GTNNAC	2 cut(s)	468, 695
Hpy188I	TCNGA	4 cut(s)	57, 554, 727, 877
Hpy188III	TCNNGA	2 cut(s)	47, 285
Hpy8I	GTNNAC	2 cut(s)	468, 695
Hpy99I	CGWCG	1 cut(s)	558
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	107, 571
HpyCH4V	TGCA	8 cut(s)	65, 164, 176, 269, 292, 353, 719, 1010
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 266, 788, 797, 854
HpyF3I	CTNAG	1 cut(s)	447
Hsp92II	CATG	3 cut(s)	428, 821, 952
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	1 cut(s)	537
LmnI	GCTCC	4 cut(s)	94, 247, 648, 779
Lsp1109I	GCAGC	5 cut(s)	127, 148, 160, 269, 304
LweI	GCATC	2 cut(s)	269, 402
MabI	ACCWGGT	2 cut(s)	325, 688
MaeI	CTAG	4 cut(s)	264, 296, 599, 962
MaeIII	GTNAC	2 cut(s)	310, 914
MalI	GATC	1 cut(s)	539
MboI	GATC	1 cut(s)	537
MboII	GAAGA	2 cut(s)	35, 602
MfeI	CAATTG	1 cut(s)	365
MhlI	GDGCHC	3 cut(s)	91, 645, 709
MluCI	AATT	5 cut(s)	251, 365, 739, 888, 966
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	2 cut(s)	444, 577
MnlI	CCTC	6 cut(s)	68, 103, 511, 592, 750, 929
MseI	TTAA	3 cut(s)	99, 242, 624
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	1 cut(s)	854
MspR9I	CCNGG	8 cut(s)	116, 321, 327, 407, 647, 690, 854, 939
MunI	CAATTG	1 cut(s)	365
MvaI	CCWGG	7 cut(s)	116, 321, 327, 407, 647, 690, 939
MvnI	CGCG	1 cut(s)	990
MwoI	GCNNNNNNNGC	5 cut(s)	170, 266, 788, 797, 854
NciI	CCSGG	1 cut(s)	854
NcoI	CCATGG	3 cut(s)	424, 817, 948
NdeII	GATC	1 cut(s)	537
NlaIII	CATG	3 cut(s)	428, 821, 952
NlaIV	GGNNCC	2 cut(s)	403, 936
NmuCI	GTSAC	1 cut(s)	310
PaqCI	CACCTGC	1 cut(s)	74
PfeI	GAWTC	4 cut(s)	281, 479, 490, 761
PfoI	TCCNGGA	3 cut(s)	114, 319, 645
PkrI	GCNGC	7 cut(s)	142, 163, 175, 259, 294, 658, 989
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	112
PshBI	ATTAAT	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	7 cut(s)	114, 319, 325, 405, 645, 688, 937
PspEI	GGTNACC	1 cut(s)	914
PspGI	CCWGG	7 cut(s)	114, 319, 325, 405, 645, 688, 937
PspN4I	GGNNCC	2 cut(s)	403, 936
PspPI	GGNCC	4 cut(s)	112, 323, 401, 935
PspPPI	RGGWCCY	1 cut(s)	112
RsaI	GTAC	4 cut(s)	27, 331, 498, 514
RsaNI	GTAC	4 cut(s)	26, 330, 497, 513
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	99, 242, 624
SatI	GCNGC	7 cut(s)	141, 162, 174, 258, 293, 657, 988
Sau3AI	GATC	1 cut(s)	537
Sau96I	GGNCC	4 cut(s)	112, 323, 401, 935
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	8 cut(s)	116, 321, 327, 407, 647, 690, 854, 939
SduI	GDGCHC	3 cut(s)	91, 645, 709
SexAI	ACCWGGT	2 cut(s)	325, 688
SfaNI	GCATC	2 cut(s)	269, 402
SfcI	CTRYAG	2 cut(s)	180, 585
SinI	GGWCC	3 cut(s)	112, 323, 401
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	3 cut(s)	191, 708, 827
SmoI	CTYRAG	3 cut(s)	191, 708, 827
Sse9I	AATT	5 cut(s)	251, 365, 739, 888, 966
SsiI	CCGC	4 cut(s)	635, 656, 702, 988
SspMI	CTAG	4 cut(s)	264, 296, 599, 962
StyD4I	CCNGG	8 cut(s)	114, 319, 325, 405, 645, 688, 852, 937
StyI	CCWWGG	3 cut(s)	424, 817, 948
TaaI	ACNGT	2 cut(s)	107, 571
TasI	AATT	5 cut(s)	251, 365, 739, 888, 966
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	2 cut(s)	659, 990
TfiI	GAWTC	4 cut(s)	281, 479, 490, 761
Tru1I	TTAA	3 cut(s)	99, 242, 624
Tru9I	TTAA	3 cut(s)	99, 242, 624
TscAI	CASTG	2 cut(s)	112, 481
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	5 cut(s)	140, 161, 173, 257, 292
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	4 cut(s)	405, 447, 476, 666
TspRI	CASTG	2 cut(s)	112, 481
VpaK11BI	GGWCC	3 cut(s)	112, 323, 401
VspI	ATTAAT	1 cut(s)	242
XapI	RAATTY	1 cut(s)	739
XspI	CTAG	4 cut(s)	264, 296, 599, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.