RchiOBHm_Chr5g0031371

Protein DJ-1 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
24963864 .. 24967892
4029 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31064

Sequence Viewer

Length: 1194 bp
ATGGCTTCCGCTTCTCCCGCCAAGAAGGTTCTGGTTCCGATTGCGAATGGCTCGGAGCCGATGGAGGCGGTGATCGTCGTCGATGTTCTGCGCCGAGCCGGAGCTGATGTCACTGTGGCTTCTGTGGAGAAGCAGCTGAGGGTTGAGGCGTGTCGTGGGGTTAAGATCATCGCTGATGCTTTGGTTTCGGACTGTGGCCAGACCTCCTTCGATCTCATTACTCTGCCTGGAGGGATACCGGGTGCTACCAATCTTAAGAATAGTGAGGTCCTGCAAAGCCTGGTGAAAAAGCAAGCTGCCGATGGGAAGCTCTATGCTGCAATCTGCGCTGCACCTGCAGTGGCACTTGGGTCTTGGGGTGTGCTGAAGGGATTGAAAGCAACTTGCCATCCTTCAGTAATGGATCAATTAGCAGCATCTGGTGCAACTGCTGTTGAATCAAGAGTGCAGCTGGATGGCAAAGCTGTGACAAGTCGTGGACCTGGTACTACCATAGAGTTTGCTGTTGCACTTGTTGAGCAATTGTATGGGAAAGGGAAAGCTGATGAAGTTTCTGGTCCCCTGGTTATGCGTTCCAACCATGGGGATGAATATATCATAACTGAGCAAAACCCAACAAAGTGGACTTTCACTGATTCCCCAAAGATTCTTGTACCGATAGCTAATGGTACAGAGGAAATGGAAGCTATAATGATCATTGATATTCTACGAGAAGCCAAAGCAACTGTTGTGGTGGCCTCTGTAGAAGATAAGCTAGACATTATTGCTTCTCGCAAAGTTAAGCTGGAAGCAGATGTGCTCCTGGATGAAGCGGCCAAACTTTCGTATGACCTAATAGTTTTGCCTGGTGGACTTGGCGGTGCTCAAGCTTTTGCAAAATCAGAAACACTTGTGAATTTGTTGAAAAAGCAGAGGGAATCAAATAAGCCTTATGGAGCTATATGTGCTTCACCAGCTTTAGTCTTTGAACCCCATGGCTTACTCAAGGGAAAAAAGGCCACAGCTTTCCCAGCAATGTGTGACAAGCTGTCAGATAAGAGTGAAATTGAAAATAGGGTATTGGTTGATGGTAACCTCATCACCAGCAGGGGGCCAGGAACTTCCGTGGAGTTTGCTCTAGGAATTGTTGAGAAGTTTTTTGGCCGCGAAAAAGCAATAGAGCTTGCAAAAGTTATGGTTTTTGTTCGTCCATAA

Protein Analysis

397

Amino Acids

41.86

Weight (kDa)

6.4

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 8 - 174 4.3e-47 DJ-1/PfpI family
DJ-1_PfpI PF01965 215 - 377 7.2e-42 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AccII CGCG 1 cut(s) 1146
AciI CCGC 6 cut(s) 9, 18, 68, 812, 858, 1144
AclWI GGATC 1 cut(s) 411
AcoI YGGCCR 3 cut(s) 196, 813, 1141
AcsI RAATTY 1 cut(s) 895
AcuI CTGAAG 2 cut(s) 378, 386
AfaI GTAC 3 cut(s) 487, 654, 670
AfiI CCNNNNNNNGG 2 cut(s) 582, 1089
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 5 cut(s) 376, 437, 904, 968, 1049
AhdI GACNNNNNGTC 1 cut(s) 1027
AjnI CCWGG 7 cut(s) 226, 279, 481, 561, 801, 844, 1093
Alw21I GWGCWC 2 cut(s) 801, 865
AlwI GGATC 1 cut(s) 411
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 6 cut(s) 196, 735, 813, 996, 1091, 1141
ApeKI GCWGC 6 cut(s) 133, 296, 317, 329, 413, 448
ApoI RAATTY 1 cut(s) 895
AspLEI GCGC 2 cut(s) 93, 329
AspS9I GGNCC 4 cut(s) 268, 479, 557, 1091
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 4 cut(s) 82, 295, 942, 1072
AvaII GGWCC 3 cut(s) 268, 479, 557
BalI TGGCCA 1 cut(s) 198
Bbv12I GWGCWC 2 cut(s) 801, 865
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 6 cut(s) 145, 283, 304, 316, 425, 460
BccI CCATC 5 cut(s) 55, 296, 396, 449, 1061
BciT130I CCWGG 7 cut(s) 228, 281, 483, 563, 803, 846, 1095
BciVI GTATCC 1 cut(s) 228
BclI TGATCA 1 cut(s) 693
BcnI CCSGG 1 cut(s) 240
BfaI CTAG 2 cut(s) 755, 1118
BfmI CTRYAG 2 cut(s) 336, 741
BfrI CTTAAG 1 cut(s) 254
BfuAI ACCTGC 1 cut(s) 343
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 8 cut(s) 134, 297, 318, 330, 414, 449, 813, 1144
BlsI GCNGC 8 cut(s) 135, 298, 319, 331, 415, 450, 814, 1145
Bme1390I CCNGG 8 cut(s) 228, 240, 281, 483, 563, 803, 846, 1095
Bme18I GGWCC 3 cut(s) 268, 479, 557
BmeRI GACNNNNNGTC 1 cut(s) 1027
BmgT120I GGNCC 4 cut(s) 268, 479, 557, 1091
BmiI GGNNCC 4 cut(s) 36, 57, 559, 1092
BmrFI CCNGG 8 cut(s) 228, 240, 281, 483, 563, 803, 846, 1095
BmsI GCATC 2 cut(s) 166, 425
BpmI CTGGAG 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 2 cut(s) 849, 968
BpuMI CCSGG 1 cut(s) 240
BsaJI CCNNGG 4 cut(s) 561, 580, 973, 1104
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 582, 1089
Bse3DI GCAATG 1 cut(s) 1020
BseBI CCWGG 7 cut(s) 228, 281, 483, 563, 803, 846, 1095
BseDI CCNNGG 4 cut(s) 561, 580, 973, 1104
BseGI GGATG 4 cut(s) 388, 460, 592, 811
BseLI CCNNNNNNNGG 2 cut(s) 582, 1089
BseMI GCAATG 1 cut(s) 1020
BseMII CTCAG 2 cut(s) 128, 594
BseXI GCAGC 6 cut(s) 145, 283, 304, 316, 425, 460
BseYI CCCAGC 1 cut(s) 1009
BsgI GTGCAG 2 cut(s) 315, 467
Bsh1236I CGCG 1 cut(s) 1146
BshFI GGCC 6 cut(s) 198, 737, 815, 998, 1093, 1143
BsiHKAI GWGCWC 2 cut(s) 801, 865
BsiSI CCGG 2 cut(s) 99, 239
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 2 cut(s) 582, 1089
BsmFI GGGAC 1 cut(s) 543
BsnI GGCC 6 cut(s) 198, 737, 815, 998, 1093, 1143
Bsp1286I GDGCHC 2 cut(s) 801, 865
Bsp143I GATC 5 cut(s) 72, 165, 211, 403, 693
Bsp19I CCATGG 2 cut(s) 580, 973
BspACI CCGC 6 cut(s) 9, 18, 68, 812, 858, 1144
BspANI GGCC 6 cut(s) 198, 737, 815, 998, 1093, 1143
BspCNI CTCAG 2 cut(s) 129, 595
BspFNI CGCG 1 cut(s) 1146
BspLI GGNNCC 4 cut(s) 36, 57, 559, 1092
BspMAI CTGCAG 1 cut(s) 340
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 1 cut(s) 411
BspTI CTTAAG 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 1020
BssECI CCNNGG 4 cut(s) 561, 580, 973, 1104
BssMI GATC 5 cut(s) 72, 165, 211, 403, 693
BssT1I CCWWGG 2 cut(s) 580, 973
Bst2UI CCWGG 7 cut(s) 228, 281, 483, 563, 803, 846, 1095
Bst4CI ACNGT 3 cut(s) 115, 194, 727
BstAFI CTTAAG 1 cut(s) 254
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 294, 1164
BstDEI CTNAG 2 cut(s) 137, 603
BstDSI CCRYGG 3 cut(s) 580, 973, 1104
BstEII GGTNACC 1 cut(s) 1070
BstF5I GGATG 4 cut(s) 388, 460, 592, 811
BstFNI CGCG 1 cut(s) 1146
BstHHI GCGC 2 cut(s) 93, 329
BstKTI GATC 5 cut(s) 75, 168, 214, 406, 696
BstMBI GATC 5 cut(s) 72, 165, 211, 403, 693
BstMWI GCNNNNNNNGC 7 cut(s) 17, 326, 335, 422, 944, 953, 1010
BstNI CCWGG 7 cut(s) 228, 281, 483, 563, 803, 846, 1095
BstPI GGTNACC 1 cut(s) 1070
BstSCI CCNGG 8 cut(s) 226, 238, 279, 481, 561, 801, 844, 1093
BstSFI CTRYAG 2 cut(s) 336, 741
BstUI CGCG 1 cut(s) 1146
BstV1I GCAGC 6 cut(s) 145, 283, 304, 316, 425, 460
BstXI CCANNNNNNTGG 1 cut(s) 621
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 6 cut(s) 198, 737, 815, 998, 1093, 1143
BtgI CCRYGG 3 cut(s) 580, 973, 1104
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 4 cut(s) 388, 460, 592, 811
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 3 cut(s) 111, 345, 630
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 294, 1164
CaiI CAGNNNCTG 1 cut(s) 419
CfoI GCGC 2 cut(s) 93, 329
Cfr13I GGNCC 4 cut(s) 268, 479, 557, 1091
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 3 cut(s) 486, 653, 669
CspCI CAANNNNNGTGG 2 cut(s) 711, 746
CviAII CATG 2 cut(s) 581, 974
CviQI GTAC 3 cut(s) 486, 653, 669
DdeI CTNAG 2 cut(s) 137, 603
DpnI GATC 5 cut(s) 74, 167, 213, 405, 695
DpnII GATC 5 cut(s) 72, 165, 211, 403, 693
DriI GACNNNNNGTC 1 cut(s) 1027
EaeI YGGCCR 3 cut(s) 196, 813, 1141
Eam1105I GACNNNNNGTC 1 cut(s) 1027
Eco130I CCWWGG 2 cut(s) 580, 973
Eco47I GGWCC 3 cut(s) 268, 479, 557
Eco57I CTGAAG 2 cut(s) 378, 386
Eco91I GGTNACC 1 cut(s) 1070
EcoO109I RGGNCCY 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 1070
EcoRII CCWGG 7 cut(s) 226, 279, 481, 561, 801, 844, 1093
EcoT14I CCWWGG 2 cut(s) 580, 973
ErhI CCWWGG 2 cut(s) 580, 973
FaeI CATG 2 cut(s) 584, 977
FaqI GGGAC 1 cut(s) 543
FatI CATG 2 cut(s) 580, 973
FauI CCCGC 1 cut(s) 25
FbaI TGATCA 1 cut(s) 693
Fnu4HI GCNGC 8 cut(s) 134, 297, 318, 330, 414, 449, 813, 1144
FokI GGATG 4 cut(s) 375, 467, 599, 818
Fsp4HI GCNGC 8 cut(s) 134, 297, 318, 330, 414, 449, 813, 1144
FspBI CTAG 2 cut(s) 755, 1118
GlaI GCGC 2 cut(s) 92, 328
GluI GCNGC 8 cut(s) 134, 297, 318, 330, 414, 449, 813, 1144
GsaI CCCAGC 1 cut(s) 1013
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 6 cut(s) 198, 737, 815, 998, 1093, 1143
HapII CCGG 2 cut(s) 99, 239
HhaI GCGC 2 cut(s) 93, 329
Hin1II CATG 2 cut(s) 584, 977
Hin6I GCGC 2 cut(s) 91, 327
HinP1I GCGC 2 cut(s) 91, 327
HindIII AAGCTT 1 cut(s) 867
HinfI GANTC 4 cut(s) 437, 635, 646, 917
HpaII CCGG 2 cut(s) 99, 239
HphI GGTGA 4 cut(s) 82, 295, 942, 1072
Hpy166II GTNNAC 3 cut(s) 479, 624, 851
Hpy188I TCNGA 5 cut(s) 39, 55, 190, 883, 1033
Hpy188III TCNNGA 1 cut(s) 441
Hpy8I GTNNAC 3 cut(s) 479, 624, 851
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 4 cut(s) 19, 217, 361, 402
HpyCH4III ACNGT 3 cut(s) 115, 194, 727
HpyCH4V TGCA 9 cut(s) 274, 320, 332, 338, 425, 448, 509, 875, 1166
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 326, 335, 422, 944, 953, 1010
HpyF3I CTNAG 2 cut(s) 137, 603
Hsp92II CATG 2 cut(s) 584, 977
HspAI GCGC 2 cut(s) 91, 327
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 5 cut(s) 72, 165, 211, 403, 693
LmnI GCTCC 4 cut(s) 55, 101, 804, 935
Lsp1109I GCAGC 6 cut(s) 145, 283, 304, 316, 425, 460
LweI GCATC 2 cut(s) 166, 425
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 2 cut(s) 755, 1118
MaeIII GTNAC 4 cut(s) 109, 466, 1019, 1070
MalI GATC 5 cut(s) 74, 167, 213, 405, 695
MboI GATC 5 cut(s) 72, 165, 211, 403, 693
MboII GAAGA 1 cut(s) 758
MfeI CAATTG 1 cut(s) 521
MhlI GDGCHC 2 cut(s) 801, 865
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 5 cut(s) 407, 521, 895, 1044, 1122
MluNI TGGCCA 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 600
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
MseI TTAA 3 cut(s) 162, 255, 780
MslI CAYNNNNRTG 1 cut(s) 585
Msp20I TGGCCA 1 cut(s) 198
MspA1I CMGCKG 2 cut(s) 136, 451
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 2 cut(s) 99, 239
MspR9I CCNGG 8 cut(s) 228, 240, 281, 483, 563, 803, 846, 1095
MunI CAATTG 1 cut(s) 521
MvaI CCWGG 7 cut(s) 228, 281, 483, 563, 803, 846, 1095
MvnI CGCG 1 cut(s) 1146
MwoI GCNNNNNNNGC 7 cut(s) 17, 326, 335, 422, 944, 953, 1010
NciI CCSGG 1 cut(s) 240
NcoI CCATGG 2 cut(s) 580, 973
NdeII GATC 5 cut(s) 72, 165, 211, 403, 693
NlaIII CATG 2 cut(s) 584, 977
NlaIV GGNNCC 4 cut(s) 36, 57, 559, 1092
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 3 cut(s) 109, 466, 1019
PaqCI CACCTGC 1 cut(s) 343
PfeI GAWTC 4 cut(s) 437, 635, 646, 917
PfoI TCCNGGA 1 cut(s) 801
PkrI GCNGC 8 cut(s) 135, 298, 319, 331, 415, 450, 814, 1145
PpuMI RGGWCCY 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 268
Psp6I CCWGG 7 cut(s) 226, 279, 481, 561, 801, 844, 1093
PspEI GGTNACC 1 cut(s) 1070
PspFI CCCAGC 1 cut(s) 1009
PspGI CCWGG 7 cut(s) 226, 279, 481, 561, 801, 844, 1093
PspN4I GGNNCC 4 cut(s) 36, 57, 559, 1092
PspPI GGNCC 4 cut(s) 268, 479, 557, 1091
PspPPI RGGWCCY 1 cut(s) 268
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 419
PvuII CAGCTG 2 cut(s) 136, 451
RsaI GTAC 3 cut(s) 487, 654, 670
RsaNI GTAC 3 cut(s) 486, 653, 669
RseI CAYNNNNRTG 1 cut(s) 585
SaqAI TTAA 3 cut(s) 162, 255, 780
SatI GCNGC 8 cut(s) 134, 297, 318, 330, 414, 449, 813, 1144
Sau3AI GATC 5 cut(s) 72, 165, 211, 403, 693
Sau96I GGNCC 4 cut(s) 268, 479, 557, 1091
ScrFI CCNGG 8 cut(s) 228, 240, 281, 483, 563, 803, 846, 1095
SduI GDGCHC 2 cut(s) 801, 865
SexAI ACCWGGT 1 cut(s) 481
SfaNI GCATC 2 cut(s) 166, 425
SfcI CTRYAG 2 cut(s) 336, 741
SinI GGWCC 3 cut(s) 268, 479, 557
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 3 cut(s) 254, 864, 983
SmoI CTYRAG 3 cut(s) 254, 864, 983
Sse9I AATT 5 cut(s) 407, 521, 895, 1044, 1122
SsiI CCGC 6 cut(s) 9, 18, 68, 812, 858, 1144
SspMI CTAG 2 cut(s) 755, 1118
StyD4I CCNGG 8 cut(s) 226, 238, 279, 481, 561, 801, 844, 1093
StyI CCWWGG 2 cut(s) 580, 973
TaaI ACNGT 3 cut(s) 115, 194, 727
TaqI TCGA 2 cut(s) 81, 210
TasI AATT 5 cut(s) 407, 521, 895, 1044, 1122
TauI GCSGC 2 cut(s) 815, 1146
TfiI GAWTC 4 cut(s) 437, 635, 646, 917
Tru1I TTAA 3 cut(s) 162, 255, 780
Tru9I TTAA 3 cut(s) 162, 255, 780
TscAI CASTG 3 cut(s) 118, 345, 637
TseFI GTSAC 3 cut(s) 109, 466, 1019
TseI GCWGC 6 cut(s) 133, 296, 317, 329, 413, 448
Tsp45I GTSAC 3 cut(s) 109, 466, 1019
TspDTI ATGAA 3 cut(s) 561, 603, 822
TspGWI ACGGA 1 cut(s) 1093
TspRI CASTG 3 cut(s) 118, 345, 637
Vha464I CTTAAG 1 cut(s) 254
VpaK11BI GGWCC 3 cut(s) 268, 479, 557
XapI RAATTY 1 cut(s) 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XspI CTAG 2 cut(s) 755, 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.