Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018148.1

Orthogroup ID

OG0005791

Physical Location & Seq

Genomic Coordinates Forward (+)

994 .. 4731

Gene Structure 3738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018148.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

atggcattgcctcgctcatttctgttgggctcgtctccctttatattatgtagcagactccatcatataacccctacaacaatcctcctcccttctctcactgccaaacccattccttcactctccttctctctctcctccaccaccgccatggcttccgcttctcccgccaagaaggttctggttccgattgcgaatggctcggagcagatggaggcggtgatcgccgtcgatgttctgcgccgagccggagctgatgtcactatggcttctgtggagaagcagctgagggttgaggcgtgtcatggggttaagatcatcgctgatgctttgatttcggactgtggccagagctcctttgatctcattactctacctggagggatgccaggtgctaccaatcttaaaaacagtgaggtcctggaaagtctggtgaaaaagcaagctgccgatgggaagctctatgctgcaatctgtgctgcacctgtagtggcacttgagtcttggggtgtgctgaagggattgaaagcaacttgctatccatcattaatggagcaattagcagcatctagtgcaactgctgttgaatcaagagtgcagctagatggcaaagctgtgacaagtcctggacctggtactaccatagagtgtgctgttgcacttgttgagcaattgtatgggaaagagaaagctgatgaagtttctggtcccctgattcttgtaccaatagctaatggtacagaggaaatggaagctataatgatcattgatattctccgacgagccaaagcaactgttgtagtggcctctgtagaagataagctagacattattgcttctcgcaaagttaagctggaagcggatgtgctcctggatgaagcggccaaactttcgtatgacctaatagttttgcctggtggacttggcggtgctcaagcttttgcaaaatcagaaacacttgtgaatttgttgaaaaagcagagggaatcaaataagccttatggagctatatgtgcttcaccagctttagtctttgaaccccatggcttactcaagggaaaaaaggctactgctttcccagcaatgtgcgacaagctgtcagataagagtgaaattgaaaatagggtattggttgatggtaacctcatcaccagcagggggccaggaacttccatggagtttgctctaggaatcgttgagaagttttttggccgcgaaaaagcaatagagcttgcaaaagttctggtttttgttcatccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

420

Amino Acids

44.2

Weight (kDa)

6.56

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53280 AT1G53280 AT3G14990 AT3G14990 AT3G14990
fragaria_vesca	FvH4_3g18570 FvH4_3g18570 FvH4_3g18570
malus_domestica	MD03G1241000.v1.1 MD11G1260500.v1.1
prunus_persica	Prupe.4G167800_v2.0.a1 Prupe.4G167900_v2.0.a1
pyrus_communis	pycom11g22990
rosa_chinensis	RchiOBHm_Chr5g0031321 RchiOBHm_Chr5g0031331 RchiOBHm_Chr5g0031361 RchiOBHm_Chr5g0031371
rosa_laevigata	RLG00000033301
rosa_multiflora	Rmu_sc0007782.1_g000014 Rmu_sc0018148.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048960
rosa_rugosa	Rorug05G0124300 Rorug05G0124700
rosa_samantha	Rh5AG217400 Rh5BG217100 Rh5CG240700 Rh5DG222400
rosa_wichuraiana	Rw5G019880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1215
AciI	CCGC	8 cut(s)	147, 159, 168, 218, 860, 881, 927, 1213
AcoI	YGGCCR	3 cut(s)	346, 882, 1210
AcsI	RAATTY	1 cut(s)	964
AcuI	CTGAAG	1 cut(s)	536
AfaI	GTAC	3 cut(s)	637, 723, 739
AfiI	CCNNNNNNNGG	2 cut(s)	632, 1158
AgsI	TTSAA	5 cut(s)	526, 587, 973, 1037, 1118
AhdI	GACNNNNNGTC	1 cut(s)	1096
AjnI	CCWGG	8 cut(s)	376, 388, 420, 625, 631, 870, 913, 1162
Alw21I	GWGCWC	3 cut(s)	356, 870, 934
Alw26I	GTCTC	1 cut(s)	39
AoxI	GGCC	5 cut(s)	346, 804, 882, 1160, 1210
ApeKI	GCWGC	6 cut(s)	283, 446, 467, 479, 563, 598
ApoI	RAATTY	1 cut(s)	964
AseI	ATTAAT	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	4 cut(s)	418, 629, 707, 1160
AsuHPI	GGTGA	4 cut(s)	232, 445, 1011, 1141
AvaII	GGWCC	3 cut(s)	418, 629, 707
BalI	TGGCCA	1 cut(s)	348
BanII	GRGCYC	2 cut(s)	32, 356
Bbv12I	GWGCWC	3 cut(s)	356, 870, 934
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	6 cut(s)	295, 433, 454, 466, 575, 610
BccI	CCATC	6 cut(s)	69, 205, 446, 550, 599, 1130
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	8 cut(s)	378, 390, 422, 627, 633, 872, 915, 1164
BclI	TGATCA	1 cut(s)	762
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	4 cut(s)	570, 602, 824, 1187
BfmI	CTRYAG	2 cut(s)	486, 810
BisI	GCNGC	8 cut(s)	284, 447, 468, 480, 564, 599, 882, 1213
BlsI	GCNGC	8 cut(s)	285, 448, 469, 481, 565, 600, 883, 1214
Bme1390I	CCNGG	8 cut(s)	378, 390, 422, 627, 633, 872, 915, 1164
Bme18I	GGWCC	3 cut(s)	418, 629, 707
BmeRI	GACNNNNNGTC	1 cut(s)	1096
BmgT120I	GGNCC	4 cut(s)	418, 629, 707, 1160
BmiI	GGNNCC	3 cut(s)	186, 709, 1161
BmrFI	CCNGG	8 cut(s)	378, 390, 422, 627, 633, 872, 915, 1164
BmsI	GCATC	3 cut(s)	316, 375, 575
BpmI	CTGGAG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	3 cut(s)	518, 918, 1037
BsaJI	CCNNGG	3 cut(s)	150, 1042, 1173
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	632, 1158
Bse3DI	GCAATG	2 cut(s)	5, 1089
BseBI	CCWGG	8 cut(s)	378, 390, 422, 627, 633, 872, 915, 1164
BseDI	CCNNGG	3 cut(s)	150, 1042, 1173
BseGI	GGATG	4 cut(s)	390, 868, 880, 1255
BseLI	CCNNNNNNNGG	2 cut(s)	632, 1158
BseMI	GCAATG	2 cut(s)	5, 1089
BseMII	CTCAG	1 cut(s)	278
BseRI	GAGGAG	2 cut(s)	77, 127
BseXI	GCAGC	6 cut(s)	295, 433, 454, 466, 575, 610
BseYI	CCCAGC	1 cut(s)	1078
BsgI	GTGCAG	2 cut(s)	465, 617
Bsh1236I	CGCG	1 cut(s)	1215
BshFI	GGCC	5 cut(s)	348, 806, 884, 1162, 1212
BsiHKAI	GWGCWC	3 cut(s)	356, 870, 934
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	693
BslI	CCNNNNNNNGG	2 cut(s)	632, 1158
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	693
BsnI	GGCC	5 cut(s)	348, 806, 884, 1162, 1212
Bsp1286I	GDGCHC	4 cut(s)	32, 356, 870, 934
Bsp143I	GATC	4 cut(s)	222, 315, 361, 762
Bsp19I	CCATGG	3 cut(s)	150, 1042, 1173
BspACI	CCGC	8 cut(s)	147, 159, 168, 218, 860, 881, 927, 1213
BspANI	GGCC	5 cut(s)	348, 806, 884, 1162, 1212
BspCNI	CTCAG	1 cut(s)	279
BspFNI	CGCG	1 cut(s)	1215
BspLI	GGNNCC	3 cut(s)	186, 709, 1161
BsrDI	GCAATG	2 cut(s)	5, 1089
BssECI	CCNNGG	3 cut(s)	150, 1042, 1173
BssMI	GATC	4 cut(s)	222, 315, 361, 762
BssT1I	CCWWGG	3 cut(s)	150, 1042, 1173
Bst2UI	CCWGG	8 cut(s)	378, 390, 422, 627, 633, 872, 915, 1164
Bst4CI	ACNGT	3 cut(s)	344, 413, 796
BstAPI	GCANNNNNTGC	2 cut(s)	476, 572
BstC8I	GCNNGC	2 cut(s)	444, 1233
BstDEI	CTNAG	1 cut(s)	287
BstDSI	CCRYGG	3 cut(s)	150, 1042, 1173
BstEII	GGTNACC	1 cut(s)	1139
BstF5I	GGATG	4 cut(s)	390, 868, 880, 1255
BstFNI	CGCG	1 cut(s)	1215
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	4 cut(s)	225, 318, 364, 765
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	4 cut(s)	222, 315, 361, 762
BstMWI	GCNNNNNNNGC	7 cut(s)	167, 224, 476, 572, 1013, 1022, 1079
BstNI	CCWGG	8 cut(s)	378, 390, 422, 627, 633, 872, 915, 1164
BstPI	GGTNACC	1 cut(s)	1139
BstSCI	CCNGG	8 cut(s)	376, 388, 420, 625, 631, 870, 913, 1162
BstSFI	CTRYAG	2 cut(s)	486, 810
BstUI	CGCG	1 cut(s)	1215
BstV1I	GCAGC	6 cut(s)	295, 433, 454, 466, 575, 610
BstXI	CCANNNNNNTGG	1 cut(s)	151
BsuRI	GGCC	5 cut(s)	348, 806, 884, 1162, 1212
BtgI	CCRYGG	3 cut(s)	150, 1042, 1173
BtgZI	GCGATG	1 cut(s)	304
BtsCI	GGATG	4 cut(s)	390, 868, 880, 1255
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	99, 418
Cac8I	GCNNGC	2 cut(s)	444, 1233
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	4 cut(s)	418, 629, 707, 1160
CsiI	ACCWGGT	1 cut(s)	631
Csp6I	GTAC	3 cut(s)	636, 722, 738
CviAII	CATG	4 cut(s)	151, 305, 1043, 1174
CviQI	GTAC	3 cut(s)	636, 722, 738
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	4 cut(s)	224, 317, 363, 764
DpnII	GATC	4 cut(s)	222, 315, 361, 762
DriI	GACNNNNNGTC	1 cut(s)	1096
EaeI	YGGCCR	3 cut(s)	346, 882, 1210
Eam1105I	GACNNNNNGTC	1 cut(s)	1096
Ecl136II	GAGCTC	1 cut(s)	354
Eco130I	CCWWGG	3 cut(s)	150, 1042, 1173
Eco24I	GRGCYC	2 cut(s)	32, 356
Eco47I	GGWCC	3 cut(s)	418, 629, 707
Eco53kI	GAGCTC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	1139
EcoICRI	GAGCTC	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	418
EcoO65I	GGTNACC	1 cut(s)	1139
EcoRII	CCWGG	8 cut(s)	376, 388, 420, 625, 631, 870, 913, 1162
EcoT14I	CCWWGG	3 cut(s)	150, 1042, 1173
EcoT38I	GRGCYC	2 cut(s)	32, 356
ErhI	CCWWGG	3 cut(s)	150, 1042, 1173
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	4 cut(s)	154, 308, 1046, 1177
FaqI	GGGAC	1 cut(s)	693
FatI	CATG	4 cut(s)	150, 304, 1042, 1173
FauI	CCCGC	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	762
Fnu4HI	GCNGC	8 cut(s)	284, 447, 468, 480, 564, 599, 882, 1213
FokI	GGATG	4 cut(s)	397, 875, 887, 1242
FriOI	GRGCYC	2 cut(s)	32, 356
Fsp4HI	GCNGC	8 cut(s)	284, 447, 468, 480, 564, 599, 882, 1213
FspBI	CTAG	4 cut(s)	570, 602, 824, 1187
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	8 cut(s)	284, 447, 468, 480, 564, 599, 882, 1213
GsaI	CCCAGC	1 cut(s)	1082
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	5 cut(s)	348, 806, 884, 1162, 1212
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	154, 308, 1046, 1177
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	936
HinfI	GANTC	6 cut(s)	57, 500, 587, 715, 986, 1191
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	4 cut(s)	232, 445, 1011, 1141
Hpy166II	GTNNAC	1 cut(s)	920
Hpy188I	TCNGA	6 cut(s)	189, 205, 340, 779, 952, 1102
Hpy188III	TCNNGA	1 cut(s)	591
Hpy8I	GTNNAC	1 cut(s)	920
Hpy99I	CGWCG	2 cut(s)	233, 783
HpyAV	CCTTC	5 cut(s)	102, 126, 136, 169, 511
HpyCH4III	ACNGT	3 cut(s)	344, 413, 796
HpyCH4V	TGCA	7 cut(s)	470, 482, 575, 598, 659, 944, 1235
HpyF10VI	GCNNNNNNNGC	7 cut(s)	167, 224, 476, 572, 1013, 1022, 1079
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	4 cut(s)	154, 308, 1046, 1177
HspAI	GCGC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	762
Kzo9I	GATC	4 cut(s)	222, 315, 361, 762
LmnI	GCTCC	6 cut(s)	205, 251, 359, 553, 873, 1004
Lsp1109I	GCAGC	6 cut(s)	295, 433, 454, 466, 575, 610
LweI	GCATC	3 cut(s)	316, 375, 575
MabI	ACCWGGT	1 cut(s)	631
MaeI	CTAG	4 cut(s)	570, 602, 824, 1187
MaeIII	GTNAC	3 cut(s)	259, 616, 1139
MalI	GATC	4 cut(s)	224, 317, 363, 764
MboI	GATC	4 cut(s)	222, 315, 361, 762
MboII	GAAGA	1 cut(s)	827
MfeI	CAATTG	1 cut(s)	671
MhlI	GDGCHC	4 cut(s)	32, 356, 870, 934
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	4 cut(s)	557, 671, 964, 1113
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	2 cut(s)	51, 509
MmeI	TCCRAC	1 cut(s)	802
Mox20I	TGGCCA	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	4 cut(s)	312, 405, 548, 849
MslI	CAYNNNNRTG	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	8 cut(s)	378, 390, 422, 627, 633, 872, 915, 1164
MunI	CAATTG	1 cut(s)	671
MvaI	CCWGG	8 cut(s)	378, 390, 422, 627, 633, 872, 915, 1164
MvnI	CGCG	1 cut(s)	1215
MwoI	GCNNNNNNNGC	7 cut(s)	167, 224, 476, 572, 1013, 1022, 1079
NcoI	CCATGG	3 cut(s)	150, 1042, 1173
NdeII	GATC	4 cut(s)	222, 315, 361, 762
NlaIII	CATG	4 cut(s)	154, 308, 1046, 1177
NlaIV	GGNNCC	3 cut(s)	186, 709, 1161
NmeAIII	GCCGAG	1 cut(s)	269
NmuCI	GTSAC	2 cut(s)	259, 616
PfeI	GAWTC	4 cut(s)	587, 715, 986, 1191
PfoI	TCCNGGA	3 cut(s)	420, 625, 870
PkrI	GCNGC	8 cut(s)	285, 448, 469, 481, 565, 600, 883, 1214
PleI	GAGTC	2 cut(s)	51, 508
PpsI	GAGTC	2 cut(s)	51, 508
PpuMI	RGGWCCY	1 cut(s)	418
PshBI	ATTAAT	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	8 cut(s)	376, 388, 420, 625, 631, 870, 913, 1162
PspEI	GGTNACC	1 cut(s)	1139
PspFI	CCCAGC	1 cut(s)	1078
PspGI	CCWGG	8 cut(s)	376, 388, 420, 625, 631, 870, 913, 1162
PspN4I	GGNNCC	3 cut(s)	186, 709, 1161
PspPI	GGNCC	4 cut(s)	418, 629, 707, 1160
PspPPI	RGGWCCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	3 cut(s)	637, 723, 739
RsaNI	GTAC	3 cut(s)	636, 722, 738
RseI	CAYNNNNRTG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	356
SaqAI	TTAA	4 cut(s)	312, 405, 548, 849
SatI	GCNGC	8 cut(s)	284, 447, 468, 480, 564, 599, 882, 1213
Sau3AI	GATC	4 cut(s)	222, 315, 361, 762
Sau96I	GGNCC	4 cut(s)	418, 629, 707, 1160
SchI	GAGTC	2 cut(s)	51, 509
ScrFI	CCNGG	8 cut(s)	378, 390, 422, 627, 633, 872, 915, 1164
SduI	GDGCHC	4 cut(s)	32, 356, 870, 934
SexAI	ACCWGGT	1 cut(s)	631
SfaNI	GCATC	3 cut(s)	316, 375, 575
SfcI	CTRYAG	2 cut(s)	486, 810
SinI	GGWCC	3 cut(s)	418, 629, 707
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	3 cut(s)	497, 933, 1052
SmoI	CTYRAG	3 cut(s)	497, 933, 1052
Sse9I	AATT	4 cut(s)	557, 671, 964, 1113
SsiI	CCGC	8 cut(s)	147, 159, 168, 218, 860, 881, 927, 1213
SspMI	CTAG	4 cut(s)	570, 602, 824, 1187
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	8 cut(s)	376, 388, 420, 625, 631, 870, 913, 1162
StyI	CCWWGG	3 cut(s)	150, 1042, 1173
TaaI	ACNGT	3 cut(s)	344, 413, 796
TaqI	TCGA	1 cut(s)	231
TasI	AATT	4 cut(s)	557, 671, 964, 1113
TauI	GCSGC	2 cut(s)	884, 1215
TfiI	GAWTC	4 cut(s)	587, 715, 986, 1191
Tru1I	TTAA	4 cut(s)	312, 405, 548, 849
Tru9I	TTAA	4 cut(s)	312, 405, 548, 849
TscAI	CASTG	2 cut(s)	106, 418
TseFI	GTSAC	2 cut(s)	259, 616
TseI	GCWGC	6 cut(s)	283, 446, 467, 479, 563, 598
Tsp45I	GTSAC	2 cut(s)	259, 616
TspDTI	ATGAA	3 cut(s)	711, 891, 1244
TspRI	CASTG	2 cut(s)	106, 418
VpaK11BI	GGWCC	3 cut(s)	418, 629, 707
VspI	ATTAAT	1 cut(s)	548
XapI	RAATTY	1 cut(s)	964
XcmI	CCANNNNNNNNNTGG	2 cut(s)	148, 178
XspI	CTAG	4 cut(s)	570, 602, 824, 1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.