Rroxscaffold_1G00048960

Protein DJ-1 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
69077703 .. 69082029
4327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00048960.1

Sequence Viewer

Length: 1302 bp
ATGGCTTCCGCTTCTCCCGCCAAGAAGGTTCTGGTTCCGATTGCGAATGGCTCGGAGCCGATGGAGGCCATGATCACCGTAGATATTCTGCGCCGAGCCGGAGCTGATGTCACTGTGGCTTCTGTGGACAAGCAGCTGAGGGTTGAGGCGTGTCATGGGGTTAAGATCATCGCTGATGCTTTGGTTTCGGACTGTGGCCAGACCTCCTTTGATCTCATTACTCTACCTGGAGGGATGCCAGGTGCTACCAATCTTAAAAACAGTGAGGTCCTGGAAAGTCTGGTGAAAAAGCAAGCTGCCGATGGGAAGCTCTATGCTGCAATCTGTGCTGCACCTGCAGTGGCACTTGGGTCTTGGGGTGTGCTGAAGGGATTGAAAGCAACTTGCTATCCATCATTTATGGAGCAATTAGCAGCATCTAGTGCGACTGCTGTTGAATCAAGAGTGCAGCTAGATGGCAAAGCTGTGACAAGTCGTGGACCTGGTACTACCATAGAGTTTGCTGTTGCACTTGTTGAGCAATTGTATGGGAAAGAGAAAGCTGATGAAGTTTCTGGTCCCCTGAGCACAGTTATGTCTCAGCTATCTGTGAATGCTCATATTTATTTGGAAGACTTACCCTCTGATTATTGGGTGGAGGTGGTGGTTGCTGCTTTCCACTGGTGCTATTCTGTGATGCGTTCCAACCATGGGGATGAATATATCATAACTGAGCGAAACCCAATGAAGTGGACCTTCACTGATTCCCCAAAGATTCTTGTACCAATAGCTAATGGTACAGAGGAAATGGAAGCTATAATGATCATTGATATTCTCCGACGAGCCAAAGCAACTGTTGTAGTGGCCTCTGTAGAAGATAAGCTAGACATTATTGCTTCTCGCAAAGTTAAGCTGGAAGCGGATGTGCTCCTGGATGAAGCGGCCAAACTTTCATATGACCTAATAGTTTTGCCTGGTGGACTTGGCGGTGCTCAAGCTTTTGCAAAATCAGAAACACTTGTGAATTTGTTGAAAAAGCAGAGGGAATCAAATAAGCCTTATGGAGCTATATGTGCTTCACCAGCTTTAGTCTTTGAACCCCATGGCTTACTCAAGGGAAAAAAGGCTACTGCTTTCCCAGCAATGTGCGACAAGCTGTCAGATAAGAGTGACATTGAAAATAGGGTATTGGTTGATGGTAACCTCATCACCAGCAGGGGGCCAGGAACTTCCATGGAGTTTGCTCTAGGAATTGTTGAGAAGTTTTTTGGCCGCGAAAAAGCAATAGAGCTTGCAAAAGTTATGGTTTTTGTTCGTCCATAA

Protein Analysis

433

Amino Acids

46.33

Weight (kDa)

5.74

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 8 - 174 1.2e-45 DJ-1/PfpI family
DJ-1_PfpI PF01965 251 - 413 4.7e-42 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AccII CGCG 1 cut(s) 1254
AciI CCGC 6 cut(s) 9, 18, 899, 920, 966, 1252
AcoI YGGCCR 3 cut(s) 196, 921, 1249
AcsI RAATTY 1 cut(s) 1003
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 3 cut(s) 487, 762, 778
AfiI CCNNNNNNNGG 2 cut(s) 690, 1197
AgsI TTSAA 5 cut(s) 376, 437, 1012, 1076, 1157
AhdI GACNNNNNGTC 1 cut(s) 1135
AjnI CCWGG 7 cut(s) 226, 238, 270, 481, 909, 952, 1201
Alw21I GWGCWC 3 cut(s) 569, 909, 973
Alw26I GTCTC 1 cut(s) 582
AoxI GGCC 6 cut(s) 66, 196, 843, 921, 1199, 1249
ApeKI GCWGC 7 cut(s) 133, 296, 317, 329, 413, 448, 650
ApoI RAATTY 1 cut(s) 1003
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 5 cut(s) 268, 479, 557, 732, 1199
AsuHPI GGTGA 4 cut(s) 67, 295, 1050, 1180
AvaII GGWCC 4 cut(s) 268, 479, 557, 732
BalI TGGCCA 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 3 cut(s) 569, 909, 973
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 7 cut(s) 145, 283, 304, 316, 425, 460, 637
BccI CCATC 5 cut(s) 55, 296, 400, 449, 1169
BciT130I CCWGG 7 cut(s) 228, 240, 272, 483, 911, 954, 1203
BclI TGATCA 2 cut(s) 72, 801
BcoDI GTCTC 1 cut(s) 582
BfaI CTAG 4 cut(s) 420, 452, 863, 1226
BfmI CTRYAG 2 cut(s) 336, 849
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 9 cut(s) 134, 297, 318, 330, 414, 449, 651, 921, 1252
BlsI GCNGC 9 cut(s) 135, 298, 319, 331, 415, 450, 652, 922, 1253
Bme1390I CCNGG 7 cut(s) 228, 240, 272, 483, 911, 954, 1203
Bme18I GGWCC 4 cut(s) 268, 479, 557, 732
BmeRI GACNNNNNGTC 1 cut(s) 1135
BmgT120I GGNCC 5 cut(s) 268, 479, 557, 732, 1199
BmiI GGNNCC 4 cut(s) 36, 57, 559, 1200
BmrFI CCNGG 7 cut(s) 228, 240, 272, 483, 911, 954, 1203
BmsI GCATC 4 cut(s) 166, 225, 425, 666
BpiI GAAGAC 1 cut(s) 618
BpmI CTGGAG 1 cut(s) 249
Bpu10I CCTNAGC 2 cut(s) 137, 563
BpuEI CTTGAG 2 cut(s) 957, 1076
BsaJI CCNNGG 3 cut(s) 688, 1081, 1212
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 690, 1197
Bse1I ACTGG 1 cut(s) 665
Bse3DI GCAATG 1 cut(s) 1128
BseBI CCWGG 7 cut(s) 228, 240, 272, 483, 911, 954, 1203
BseDI CCNNGG 3 cut(s) 688, 1081, 1212
BseGI GGATG 4 cut(s) 240, 700, 907, 919
BseLI CCNNNNNNNGG 2 cut(s) 690, 1197
BseMI GCAATG 1 cut(s) 1128
BseMII CTCAG 4 cut(s) 128, 554, 593, 702
BseNI ACTGG 1 cut(s) 665
BseXI GCAGC 7 cut(s) 145, 283, 304, 316, 425, 460, 637
BseYI CCCAGC 1 cut(s) 1117
BsgI GTGCAG 2 cut(s) 315, 467
Bsh1236I CGCG 1 cut(s) 1254
BshFI GGCC 6 cut(s) 68, 198, 845, 923, 1201, 1251
BsiHKAI GWGCWC 3 cut(s) 569, 909, 973
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 2 cut(s) 690, 1197
BsmAI GTCTC 1 cut(s) 582
BsmFI GGGAC 1 cut(s) 543
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 6 cut(s) 68, 198, 845, 923, 1201, 1251
Bsp1286I GDGCHC 3 cut(s) 569, 909, 973
Bsp143I GATC 4 cut(s) 72, 165, 211, 801
Bsp19I CCATGG 3 cut(s) 688, 1081, 1212
BspACI CCGC 6 cut(s) 9, 18, 899, 920, 966, 1252
BspANI GGCC 6 cut(s) 68, 198, 845, 923, 1201, 1251
BspCNI CTCAG 4 cut(s) 129, 555, 592, 703
BspFNI CGCG 1 cut(s) 1254
BspLI GGNNCC 4 cut(s) 36, 57, 559, 1200
BspMAI CTGCAG 1 cut(s) 340
BspMI ACCTGC 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 1128
BsrI ACTGG 1 cut(s) 665
BssECI CCNNGG 3 cut(s) 688, 1081, 1212
BssMI GATC 4 cut(s) 72, 165, 211, 801
BssT1I CCWWGG 3 cut(s) 688, 1081, 1212
Bst2UI CCWGG 7 cut(s) 228, 240, 272, 483, 911, 954, 1203
Bst4CI ACNGT 6 cut(s) 79, 115, 194, 263, 571, 835
BstAPI GCANNNNNTGC 2 cut(s) 326, 422
BstC8I GCNNGC 2 cut(s) 294, 1272
BstDEI CTNAG 4 cut(s) 137, 563, 579, 711
BstDSI CCRYGG 3 cut(s) 688, 1081, 1212
BstEII GGTNACC 1 cut(s) 1178
BstF5I GGATG 4 cut(s) 240, 700, 907, 919
BstFNI CGCG 1 cut(s) 1254
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 4 cut(s) 75, 168, 214, 804
BstMAI GTCTC 1 cut(s) 582
BstMBI GATC 4 cut(s) 72, 165, 211, 801
BstMWI GCNNNNNNNGC 7 cut(s) 17, 326, 335, 422, 1052, 1061, 1118
BstNI CCWGG 7 cut(s) 228, 240, 272, 483, 911, 954, 1203
BstPI GGTNACC 1 cut(s) 1178
BstSCI CCNGG 7 cut(s) 226, 238, 270, 481, 909, 952, 1201
BstSFI CTRYAG 2 cut(s) 336, 849
BstUI CGCG 1 cut(s) 1254
BstV1I GCAGC 7 cut(s) 145, 283, 304, 316, 425, 460, 637
BstV2I GAAGAC 1 cut(s) 618
BstXI CCANNNNNNTGG 1 cut(s) 729
BsuRI GGCC 6 cut(s) 68, 198, 845, 923, 1201, 1251
BtgI CCRYGG 3 cut(s) 688, 1081, 1212
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 4 cut(s) 240, 700, 907, 919
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 5 cut(s) 111, 268, 345, 658, 738
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 294, 1272
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 5 cut(s) 268, 479, 557, 732, 1199
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 3 cut(s) 486, 761, 777
CviAII CATG 5 cut(s) 70, 155, 689, 1082, 1213
CviQI GTAC 3 cut(s) 486, 761, 777
DdeI CTNAG 4 cut(s) 137, 563, 579, 711
DpnI GATC 4 cut(s) 74, 167, 213, 803
DpnII GATC 4 cut(s) 72, 165, 211, 801
DriI GACNNNNNGTC 1 cut(s) 1135
EaeI YGGCCR 3 cut(s) 196, 921, 1249
Eam1105I GACNNNNNGTC 1 cut(s) 1135
Eco130I CCWWGG 3 cut(s) 688, 1081, 1212
Eco47I GGWCC 4 cut(s) 268, 479, 557, 732
Eco57I CTGAAG 1 cut(s) 386
Eco91I GGTNACC 1 cut(s) 1178
EcoO109I RGGNCCY 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 1178
EcoRII CCWGG 7 cut(s) 226, 238, 270, 481, 909, 952, 1201
EcoT14I CCWWGG 3 cut(s) 688, 1081, 1212
ErhI CCWWGG 3 cut(s) 688, 1081, 1212
FaeI CATG 5 cut(s) 73, 158, 692, 1085, 1216
FalI AAGNNNNNCTT 2 cut(s) 719, 751
FaqI GGGAC 1 cut(s) 543
FatI CATG 5 cut(s) 69, 154, 688, 1081, 1212
FauI CCCGC 1 cut(s) 25
FauNDI CATATG 1 cut(s) 934
FbaI TGATCA 2 cut(s) 72, 801
Fnu4HI GCNGC 9 cut(s) 134, 297, 318, 330, 414, 449, 651, 921, 1252
FokI GGATG 4 cut(s) 247, 707, 914, 926
Fsp4HI GCNGC 9 cut(s) 134, 297, 318, 330, 414, 449, 651, 921, 1252
FspBI CTAG 4 cut(s) 420, 452, 863, 1226
GlaI GCGC 1 cut(s) 92
GluI GCNGC 9 cut(s) 134, 297, 318, 330, 414, 449, 651, 921, 1252
GsaI CCCAGC 1 cut(s) 1121
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 6 cut(s) 68, 198, 845, 923, 1201, 1251
HapII CCGG 1 cut(s) 99
HhaI GCGC 1 cut(s) 93
Hin1II CATG 5 cut(s) 73, 158, 692, 1085, 1216
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 975
HinfI GANTC 4 cut(s) 437, 743, 754, 1025
HpaII CCGG 1 cut(s) 99
HphI GGTGA 4 cut(s) 67, 295, 1050, 1180
Hpy166II GTNNAC 4 cut(s) 127, 479, 732, 959
Hpy188I TCNGA 7 cut(s) 39, 55, 190, 625, 818, 991, 1141
Hpy188III TCNNGA 1 cut(s) 441
Hpy8I GTNNAC 4 cut(s) 127, 479, 732, 959
Hpy99I CGWCG 1 cut(s) 822
HpyAV CCTTC 3 cut(s) 19, 361, 745
HpyCH4III ACNGT 6 cut(s) 79, 115, 194, 263, 571, 835
HpyCH4V TGCA 7 cut(s) 320, 332, 338, 448, 509, 983, 1274
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 326, 335, 422, 1052, 1061, 1118
HpyF3I CTNAG 4 cut(s) 137, 563, 579, 711
Hsp92II CATG 5 cut(s) 73, 158, 692, 1085, 1216
HspAI GCGC 1 cut(s) 91
Ksp22I TGATCA 2 cut(s) 72, 801
Kzo9I GATC 4 cut(s) 72, 165, 211, 801
LmnI GCTCC 5 cut(s) 55, 101, 403, 912, 1043
Lsp1109I GCAGC 7 cut(s) 145, 283, 304, 316, 425, 460, 637
LweI GCATC 4 cut(s) 166, 225, 425, 666
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 4 cut(s) 420, 452, 863, 1226
MaeIII GTNAC 4 cut(s) 109, 466, 1148, 1178
MalI GATC 4 cut(s) 74, 167, 213, 803
MboI GATC 4 cut(s) 72, 165, 211, 801
MboII GAAGA 2 cut(s) 623, 866
MfeI CAATTG 1 cut(s) 521
MhlI GDGCHC 3 cut(s) 569, 909, 973
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 4 cut(s) 407, 521, 1003, 1230
MluNI TGGCCA 1 cut(s) 198
MmeI TCCRAC 2 cut(s) 708, 841
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
MseI TTAA 3 cut(s) 162, 255, 888
MslI CAYNNNNRTG 2 cut(s) 572, 693
Msp20I TGGCCA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 7 cut(s) 228, 240, 272, 483, 911, 954, 1203
MunI CAATTG 1 cut(s) 521
Mva1269I GAATGC 1 cut(s) 598
MvaI CCWGG 7 cut(s) 228, 240, 272, 483, 911, 954, 1203
MvnI CGCG 1 cut(s) 1254
MwoI GCNNNNNNNGC 7 cut(s) 17, 326, 335, 422, 1052, 1061, 1118
NcoI CCATGG 3 cut(s) 688, 1081, 1212
NdeI CATATG 1 cut(s) 934
NdeII GATC 4 cut(s) 72, 165, 211, 801
NlaIII CATG 5 cut(s) 73, 158, 692, 1085, 1216
NlaIV GGNNCC 4 cut(s) 36, 57, 559, 1200
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 3 cut(s) 109, 466, 1148
PaqCI CACCTGC 1 cut(s) 343
PctI GAATGC 1 cut(s) 598
PfeI GAWTC 4 cut(s) 437, 743, 754, 1025
PfoI TCCNGGA 2 cut(s) 270, 909
PkrI GCNGC 9 cut(s) 135, 298, 319, 331, 415, 450, 652, 922, 1253
PpuMI RGGWCCY 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 268
Psp6I CCWGG 7 cut(s) 226, 238, 270, 481, 909, 952, 1201
PspEI GGTNACC 1 cut(s) 1178
PspFI CCCAGC 1 cut(s) 1117
PspGI CCWGG 7 cut(s) 226, 238, 270, 481, 909, 952, 1201
PspN4I GGNNCC 4 cut(s) 36, 57, 559, 1200
PspPI GGNCC 5 cut(s) 268, 479, 557, 732, 1199
PspPPI RGGWCCY 1 cut(s) 268
PstI CTGCAG 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 3 cut(s) 487, 762, 778
RsaNI GTAC 3 cut(s) 486, 761, 777
RseI CAYNNNNRTG 2 cut(s) 572, 693
SaqAI TTAA 3 cut(s) 162, 255, 888
SatI GCNGC 9 cut(s) 134, 297, 318, 330, 414, 449, 651, 921, 1252
Sau3AI GATC 4 cut(s) 72, 165, 211, 801
Sau96I GGNCC 5 cut(s) 268, 479, 557, 732, 1199
ScrFI CCNGG 7 cut(s) 228, 240, 272, 483, 911, 954, 1203
SduI GDGCHC 3 cut(s) 569, 909, 973
SexAI ACCWGGT 1 cut(s) 481
SfaNI GCATC 4 cut(s) 166, 225, 425, 666
SfcI CTRYAG 2 cut(s) 336, 849
SinI GGWCC 4 cut(s) 268, 479, 557, 732
SmiMI CAYNNNNRTG 2 cut(s) 572, 693
SmlI CTYRAG 2 cut(s) 972, 1091
SmoI CTYRAG 2 cut(s) 972, 1091
Sse9I AATT 4 cut(s) 407, 521, 1003, 1230
SsiI CCGC 6 cut(s) 9, 18, 899, 920, 966, 1252
SspMI CTAG 4 cut(s) 420, 452, 863, 1226
StyD4I CCNGG 7 cut(s) 226, 238, 270, 481, 909, 952, 1201
StyI CCWWGG 3 cut(s) 688, 1081, 1212
TaaI ACNGT 6 cut(s) 79, 115, 194, 263, 571, 835
TasI AATT 4 cut(s) 407, 521, 1003, 1230
TauI GCSGC 2 cut(s) 923, 1254
TfiI GAWTC 4 cut(s) 437, 743, 754, 1025
Tru1I TTAA 3 cut(s) 162, 255, 888
Tru9I TTAA 3 cut(s) 162, 255, 888
TscAI CASTG 5 cut(s) 118, 268, 345, 665, 745
TseFI GTSAC 3 cut(s) 109, 466, 1148
TseI GCWGC 7 cut(s) 133, 296, 317, 329, 413, 448, 650
Tsp45I GTSAC 3 cut(s) 109, 466, 1148
TspDTI ATGAA 5 cut(s) 561, 711, 740, 921, 930
TspRI CASTG 5 cut(s) 118, 268, 345, 665, 745
VpaK11BI GGWCC 4 cut(s) 268, 479, 557, 732
XapI RAATTY 1 cut(s) 1003
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XspI CTAG 4 cut(s) 420, 452, 863, 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.