AT1G54710

Breast carcinoma amplified sequence 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007241
Physical Location & Seq
Reverse (-)
20416770 .. 20421156
4387 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54710.2

Sequence Viewer

Length: 2784 bp
ATGAAGAGTAACTCCAAGGTCAACATCAACAACAACGGAGATAATCATAATCAAACGAAGAATAATGGTACTAATGGCTTTTTGCCCAATTCGTTAAAATTCATCTCTACTTGCATCAGAACTGCTTCCTCCGGTGTTCGCTCAGCTAGCGCCTCCGTCGCTGCTTCCCTCTCTTCTGATTCTCACGAGCTTAAAGATCAGGTGTTGTGGTCTTCATTTGATAGATTGCACACAAGTGAATCATCTTTCAAGAACGTTCTATTACTAGGTTATACAAACGGGTTTCAAGTTCTTGATATCGATGATTCAAATGATGTTACCGAATTCGTGTCGAGGCGGGATGATCCGGTTACATTTTTACAGATGCAGCCATTACCTGCTAAATGTGATGGAGTTGAAGGGTTTAGATCATCACATCCTATACTTTTAGCTGTTGCTGATGAAGCTAAAGGTTCAGGTCCTATTGTTACTAGTAGAGATGGATCTGTTAGAAATGGTTATGAGGATCCTCTTGCACTCTCTCCCACGGTTGTGCGATTTTATTCGCTTAGATCGCATAACTATGTTCATGTTTTGAGGTTTAGATCTACTGTTTATATGGTTAGATGCAGTCCTCGGATTGTCGCTGTTGGCCTCGGTTCGCAGATATATTGTTTTGATGCGCTAACTCTTGAAAACAAATTCAGTGTCCTCTCGTATCCTGTACCTCAGCTTGGAAACCAAGGGATATCTGGGGTTAATGTTGGATATGGTCCAATGGCTGTCGGGGCTAGATGGTTAGCGTATGCTTCCAATAGTCCCTTGTCTTCTAGTATAGGTCGTCTGAGCCCTCAGAATGTTACTCCTCCTGGTGTCAGTCCATCTACCTCGCCAAATAATGGTAATCTGGTGGCAAGATACGCTATGGAATCTAGTAAGCATTTGGCAGCTGGGTTACTCAATTTGGGTGACAAGGGTTACAAAACTATATCTAAATACTGTCAAGATCTCAAGCATGACGGTCCTGGTCCTTCTCTTTCGTCCAGCCCTGGCCGGAAAGTTGGTCGGGTCGGTTCTCATTCAGCTGAGTCAGATGTTGTTGGAACGGTAATTGTCAAAGATTTTGAGTCCCGAGCTATTATAGCACAATTCAGGGCTCACACTAGTCCAATCTCTGCTCTCTGTTTCGACCCTAGTGGCACTTTACTAGTAACAGCCTCAATCCACGGTAACAATATTAACGTTTTCCGGATTATGCCGACACCTACAAAGAATGGACCGGGTGCTCAAAGCTATGATTGGAGCTCTTCCCATGTGCCTCTTTACAAACTACATCGTGGCATGACATCAGCTGTGATACAAGATATTTGCTTTAGTAGCTACAGTCAGTGGATTGCAATTGTTTCATCTAAGAGCACCTGCCATATTTATGTTTTATCCCCGTTCGGGGGAGAAAATGTTCTTGAAATACGAAACTCTCAATTCGATGGACCGACGCTTGCTCCAACATTATCCCTGCCATGGTGGTCAAGTCCGTCGTTTATGACCACCCATTTTTCATATCCACCACCAGCGTCAGTTACTCTTTCTGTGGTTAGCCGAATCAAATGCAACAATTTCTTCCATGCTGCAAGTTCCGTTGTAGGAAAACCCACCTTCCCCTCTGGCTGTCTTGCTGCTGTTTTCCATCAATCTGTGCCACAAGAATCGCAGTCGTCATCTCCTGCCTTGGACTACTTACTGGTTTACACTCCATCAGGTCATGTAGTTCAATACAAACTCATTCCATCTCTTGGAGGAGACCAGGCTGAGAGCAATACGCGAAATGGAGCAACTTCTGGGCTGACCTCTGAAGAGGAACTGAGAGTGAAAGTTGAACCAGTTCAGTGTTGGGATGTCTGTCGAAGAGCGGATTGGCCAGAGAGGGAGGAGAACATATGCGGGCTTACTTATGGTGGACGAAAAAATGCTGAGTTAACTGTTGATACTTCTGATAGTGAAGATCAAACAAAGCCTCTGGAGAAACACCATGTTTATCTTGCCAATGCAGAGGTGCTGATAAACTCCGGAAGAAAACCAATCTGGCAAAATTCAGAGATATCTTTCTATCCGATGTATCCACCAGACTCTGATGGCAAGAACCTGAATTCGCATCAAGGTGGTGGGGAGACAGAAATCGGGAAAGTATCTGCGAACGAGGTTGACATTAGGCGAAAGGATCTTCTGCCGGTATATGATAATTTTCACAGTGTGTATACCAGTATGCGCAACAGAGGATTTTCTGGGGAAAGAGATTCAGATTCTTCTTCTTCTTCTGACCCTGGACAAGTTAAAGAAATGCATCCATTCAATGGTATGGTTTACCCCGAAGATGAGGAAAGAAGAGGGAGTGCCCATTTTGCACTAACTCCAAACCAAAATCCTCATACCGGAATTGTAACATTTAAACAGCCTGTAGTTTCCATTTCTTCTGCTGTGAAAGACACTGATTATATAGACGACGACGCTCATGTCTTGCCAAAGAACGCCTCCCTGCCCGCTGAAACAAAAATTGAAAACAGCAGTGGGATAAGTGGAGATTCAAATGTAAGTTCTAACCGTTCTGATATGAGCATGAATGCAGCAGACGAGGGTGAAGGACCCATTGACGGCTCCCCAAACTTCGAGCAGTTTTTCGAGGAGGTGGTCTCCAATGAAACTGTTACAGAAACTGAGCATAAGGATGCTCCATCTGATGGAAAACTCGATGATGATGAGGACGATGACATGCTTGGTGGTGTTTTCGCTTTCTCCGAAGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

927

Amino Acids

100.51

Weight (kDa)

5.46

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 56 - 145 2e-10 BCAS3, WD40 repeat
BCAS3_WD40 PF21034 240 - 361 6e-20 BCAS3, WD40 repeat
BCAS3 PF12490 488 - 618 3.5e-34 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1406
AasI GACNNNNNNGTC 1 cut(s) 2489
Acc16I TGCGCA 1 cut(s) 2246
Acc36I ACCTGC 2 cut(s) 385, 1406
AccB7I CCANNNNNTGG 4 cut(s) 878, 1772, 2330, 2714
AccBSI CCGCTC 1 cut(s) 1889
AccI GTMKAC 1 cut(s) 2234
AccII CGCG 1 cut(s) 1801
AccIII TCCGGA 2 cut(s) 1227, 2045
AciI CCGC 4 cut(s) 337, 1889, 1920, 2517
AclI AACGTT 2 cut(s) 255, 1221
AclWI GGATC 5 cut(s) 338, 490, 500, 513, 2205
AcoI YGGCCR 2 cut(s) 1030, 1895
AcsI RAATTY 5 cut(s) 98, 323, 680, 2068, 2125
AcuI CTGAAG 1 cut(s) 1851
AdeI CACNNNGTG 1 cut(s) 2230
AfaI GTAC 2 cut(s) 70, 705
AhlI ACTAGT 3 cut(s) 470, 1142, 1186
AjnI CCWGG 5 cut(s) 847, 1003, 1027, 1782, 2299
AjuI GAANNNNNNNTTGG 2 cut(s) 1876, 1908
AleI CACNNNNGTG 2 cut(s) 234, 530
AloI GAACNNNNNNTCC 2 cut(s) 1422, 1454
Alw21I GWGCWC 3 cut(s) 1267, 1286, 1397
Alw26I GTCTC 3 cut(s) 1773, 2141, 2671
AlwI GGATC 5 cut(s) 338, 490, 500, 513, 2205
AlwNI CAGNNNCTG 2 cut(s) 2108, 2690
Ama87I CYCGRG 1 cut(s) 1110
Aor13HI TCCGGA 2 cut(s) 1227, 2045
AoxI GGCC 3 cut(s) 631, 1030, 1895
ApeKI GCWGC 6 cut(s) 161, 367, 926, 1607, 1655, 2600
ApoI RAATTY 5 cut(s) 98, 323, 680, 2068, 2125
ArsI GACNNNNNNTTYG 2 cut(s) 672, 704
Asp700I GAANNNNTTC 3 cut(s) 124, 1437, 1860
AspLEI GCGC 3 cut(s) 152, 664, 2247
AspS9I GGNCC 7 cut(s) 458, 752, 1001, 1007, 1256, 1469, 2618
AsuC2I CCSGG 1 cut(s) 1260
AsuHPI GGTGA 2 cut(s) 959, 2624
AsuNHI GCTAGC 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 1110
AvaII GGWCC 7 cut(s) 458, 752, 1001, 1007, 1256, 1469, 2618
BaeGI GKGCMC 1 cut(s) 2374
BalI TGGCCA 1 cut(s) 1897
BamHI GGATCC 1 cut(s) 505
BanII GRGCYC 3 cut(s) 830, 1138, 1286
BauI CACGAG 1 cut(s) 185
BbsI GAAGAC 2 cut(s) 204, 798
Bbv12I GWGCWC 3 cut(s) 1267, 1286, 1397
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 6 cut(s) 148, 379, 938, 1594, 1642, 2612
BceAI ACGGC 1 cut(s) 2644
BcgI CGANNNNNNTGC 2 cut(s) 1569, 1603
BciT130I CCWGG 5 cut(s) 849, 1005, 1029, 1784, 2301
BciVI GTATCC 2 cut(s) 708, 2106
BcnI CCSGG 1 cut(s) 1260
BcoDI GTCTC 3 cut(s) 1773, 2141, 2671
BcuI ACTAGT 3 cut(s) 470, 1142, 1186
BfaI CTAG 9 cut(s) 147, 266, 471, 771, 810, 912, 1143, 1173, 1187
BfmI CTRYAG 2 cut(s) 1360, 2433
BfoI RGCGCY 1 cut(s) 153
BfuAI ACCTGC 2 cut(s) 385, 1406
BfuI GTATCC 2 cut(s) 708, 2106
BglII AGATCT 2 cut(s) 584, 985
BisI GCNGC 6 cut(s) 162, 368, 927, 1608, 1656, 2601
BlpI GCTNAGC 1 cut(s) 142
BlsI GCNGC 6 cut(s) 163, 369, 928, 1609, 1657, 2602
Bme1390I CCNGG 6 cut(s) 849, 1005, 1029, 1260, 1784, 2301
Bme18I GGWCC 7 cut(s) 458, 752, 1001, 1007, 1256, 1469, 2618
BmeT110I CYCGRG 1 cut(s) 1110
BmgT120I GGNCC 7 cut(s) 458, 752, 1001, 1007, 1256, 1469, 2618
BmiI GGNNCC 3 cut(s) 507, 2620, 2632
BmrFI CCNGG 6 cut(s) 849, 1005, 1029, 1260, 1784, 2301
BmsI GCATC 7 cut(s) 123, 354, 596, 649, 2140, 2329, 2692
BmtI GCTAGC 1 cut(s) 150
BpiI GAAGAC 2 cut(s) 204, 798
BplI GAGNNNNNCTC 2 cut(s) 2651, 2683
BpmI CTGGAG 1 cut(s) 2018
Bpu10I CCTNAGC 1 cut(s) 708
Bpu1102I GCTNAGC 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 974
BpuMI CCSGG 1 cut(s) 1260
Bsa29I ATCGAT 1 cut(s) 300
BsaI GGTCTC 2 cut(s) 1773, 2671
BsaWI WCCGGW 5 cut(s) 131, 346, 1227, 2045, 2408
BsaXI ACNNNNNCTCC 4 cut(s) 1422, 1452, 1465, 1495
Bse118I RCCGGY 1 cut(s) 2206
Bse1I ACTGG 3 cut(s) 1725, 1859, 2238
BseAI TCCGGA 2 cut(s) 1227, 2045
BseBI CCWGG 5 cut(s) 849, 1005, 1029, 1784, 2301
BseCI ATCGAT 1 cut(s) 300
BseGI GGATG 5 cut(s) 346, 415, 1879, 2320, 2707
BseMII CTCAG 9 cut(s) 156, 722, 815, 845, 1056, 1779, 1832, 1941, 2682
BseNI ACTGG 3 cut(s) 1725, 1859, 2238
BseRI GAGGAG 4 cut(s) 834, 1791, 1922, 2672
BseSI GKGCMC 1 cut(s) 2374
BseXI GCAGC 6 cut(s) 148, 379, 938, 1594, 1642, 2612
BseYI CCCAGC 1 cut(s) 929
Bsh1236I CGCG 1 cut(s) 1801
BshFI GGCC 3 cut(s) 633, 1032, 1897
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 3 cut(s) 1267, 1286, 1397
BsiHKCI CYCGRG 1 cut(s) 1110
BsiSI CCGG 8 cut(s) 132, 347, 1033, 1228, 1259, 2046, 2207, 2409
BslFI GGGAC 2 cut(s) 783, 1093
BsmAI GTCTC 3 cut(s) 1773, 2141, 2671
BsmFI GGGAC 2 cut(s) 783, 1093
BsmI GAATGC 1 cut(s) 2602
BsnI GGCC 3 cut(s) 633, 1032, 1897
Bso31I GGTCTC 2 cut(s) 1773, 2671
BsoBI CYCGRG 1 cut(s) 1110
Bsp1286I GDGCHC 6 cut(s) 830, 1138, 1267, 1286, 1397, 2374
Bsp13I TCCGGA 2 cut(s) 1227, 2045
Bsp1720I GCTNAGC 1 cut(s) 142
Bsp19I CCATGG 1 cut(s) 1499
BspACI CCGC 4 cut(s) 337, 1889, 1920, 2517
BspANI GGCC 3 cut(s) 633, 1032, 1897
BspCNI CTCAG 9 cut(s) 155, 721, 816, 844, 1057, 1780, 1833, 1942, 2683
BspDI ATCGAT 1 cut(s) 300
BspEI TCCGGA 2 cut(s) 1227, 2045
BspFNI CGCG 1 cut(s) 1801
BspLI GGNNCC 3 cut(s) 507, 2620, 2632
BspMI ACCTGC 2 cut(s) 385, 1406
BspOI GCTAGC 1 cut(s) 150
BspPI GGATC 5 cut(s) 338, 490, 500, 513, 2205
BspQI GCTCTTC 2 cut(s) 1291, 1879
BspTNI GGTCTC 2 cut(s) 1773, 2671
BsrBI CCGCTC 1 cut(s) 1889
BsrFI RCCGGY 1 cut(s) 2206
BsrI ACTGG 3 cut(s) 1725, 1859, 2238
BssAI RCCGGY 1 cut(s) 2206
BssNAI GTATAC 1 cut(s) 2235
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 4 cut(s) 15, 721, 1499, 1707
Bst1107I GTATAC 1 cut(s) 2235
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 5 cut(s) 849, 1005, 1029, 1784, 2301
Bst6I CTCTTC 5 cut(s) 178, 1291, 1827, 1879, 2356
BstC8I GCNNGC 4 cut(s) 148, 1479, 1922, 2517
BstDSI CCRYGG 3 cut(s) 525, 1204, 1499
BstF5I GGATG 5 cut(s) 346, 415, 1879, 2320, 2707
BstFNI CGCG 1 cut(s) 1801
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 3 cut(s) 152, 664, 2247
BstMAI GTCTC 3 cut(s) 1773, 2141, 2671
BstMWI GCNNNNNNNGC 9 cut(s) 147, 158, 443, 553, 767, 899, 1121, 1356, 2378
BstNI CCWGG 5 cut(s) 849, 1005, 1029, 1784, 2301
BstNSI RCATGY 1 cut(s) 2749
BstSCI CCNGG 6 cut(s) 847, 1003, 1027, 1258, 1782, 2299
BstSFI CTRYAG 2 cut(s) 1360, 2433
BstSLI GKGCMC 1 cut(s) 2374
BstUI CGCG 1 cut(s) 1801
BstV1I GCAGC 6 cut(s) 148, 379, 938, 1594, 1642, 2612
BstV2I GAAGAC 2 cut(s) 204, 798
BstX2I RGATCY 5 cut(s) 482, 505, 584, 985, 2197
BstYI RGATCY 5 cut(s) 482, 505, 584, 985, 2197
BstZ17I GTATAC 1 cut(s) 2235
Bsu15I ATCGAT 1 cut(s) 300
BsuI GTATCC 2 cut(s) 708, 2106
BsuRI GGCC 3 cut(s) 633, 1032, 1897
BsuTUI ATCGAT 1 cut(s) 300
BtgI CCRYGG 3 cut(s) 525, 1204, 1499
BtsCI GGATG 5 cut(s) 346, 415, 1879, 2320, 2707
BtsI GCAGTG 1 cut(s) 2548
BtsIMutI CAGTG 6 cut(s) 691, 1373, 1871, 2233, 2463, 2548
BveI ACCTGC 2 cut(s) 385, 1406
Cac8I GCNNGC 4 cut(s) 148, 1479, 1922, 2517
CaiI CAGNNNCTG 2 cut(s) 2108, 2690
CfoI GCGC 3 cut(s) 152, 664, 2247
Cfr10I RCCGGY 1 cut(s) 2206
Cfr13I GGNCC 7 cut(s) 458, 752, 1001, 1007, 1256, 1469, 2618
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 3 cut(s) 1483, 1542, 2492
Csp6I GTAC 2 cut(s) 69, 704
CviQI GTAC 2 cut(s) 69, 704
DraI TTTAAA 1 cut(s) 2425
DraIII CACNNNGTG 1 cut(s) 2230
DrdI GACNNNNNNGTC 1 cut(s) 2489
DseDI GACNNNNNNGTC 1 cut(s) 2489
EaeI YGGCCR 2 cut(s) 1030, 1895
Eam1104I CTCTTC 5 cut(s) 178, 1291, 1827, 1879, 2356
EarI CTCTTC 5 cut(s) 178, 1291, 1827, 1879, 2356
Ecl136II GAGCTC 1 cut(s) 1284
Eco130I CCWWGG 4 cut(s) 15, 721, 1499, 1707
Eco24I GRGCYC 3 cut(s) 830, 1138, 1286
Eco31I GGTCTC 2 cut(s) 1773, 2671
Eco32I GATATC 3 cut(s) 298, 729, 2079
Eco47I GGWCC 7 cut(s) 458, 752, 1001, 1007, 1256, 1469, 2618
Eco53kI GAGCTC 1 cut(s) 1284
Eco57I CTGAAG 1 cut(s) 1851
Eco88I CYCGRG 1 cut(s) 1110
EcoICRI GAGCTC 1 cut(s) 1284
EcoO109I RGGNCCY 2 cut(s) 458, 2618
EcoRI GAATTC 2 cut(s) 323, 2125
EcoRII CCWGG 5 cut(s) 847, 1003, 1027, 1782, 2299
EcoRV GATATC 3 cut(s) 298, 729, 2079
EcoT14I CCWWGG 4 cut(s) 15, 721, 1499, 1707
EcoT22I ATGCAT 1 cut(s) 2322
EcoT38I GRGCYC 3 cut(s) 830, 1138, 1286
ErhI CCWWGG 4 cut(s) 15, 721, 1499, 1707
FaqI GGGAC 2 cut(s) 783, 1093
FauI CCCGC 3 cut(s) 330, 1913, 2524
FauNDI CATATG 1 cut(s) 1916
FblI GTMKAC 1 cut(s) 2234
Fnu4HI GCNGC 6 cut(s) 162, 368, 927, 1608, 1656, 2601
FokI GGATG 5 cut(s) 353, 402, 1886, 2307, 2714
FriOI GRGCYC 3 cut(s) 830, 1138, 1286
Fsp4HI GCNGC 6 cut(s) 162, 368, 927, 1608, 1656, 2601
FspBI CTAG 9 cut(s) 147, 266, 471, 771, 810, 912, 1143, 1173, 1187
FspI TGCGCA 1 cut(s) 2246
GlaI GCGC 3 cut(s) 151, 663, 2246
GluI GCNGC 6 cut(s) 162, 368, 927, 1608, 1656, 2601
GsaI CCCAGC 1 cut(s) 933
GsuI CTGGAG 1 cut(s) 2018
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 3 cut(s) 633, 1032, 1897
HapII CCGG 8 cut(s) 132, 347, 1033, 1228, 1259, 2046, 2207, 2409
HgaI GACGC 3 cut(s) 1483, 1542, 2492
HhaI GCGC 3 cut(s) 152, 664, 2247
Hin6I GCGC 3 cut(s) 150, 662, 2245
HinP1I GCGC 3 cut(s) 150, 662, 2245
HincII GTYRAC 3 cut(s) 22, 1956, 2182
HindII GTYRAC 3 cut(s) 22, 1956, 2182
HpaI GTTAAC 1 cut(s) 1956
HpaII CCGG 8 cut(s) 132, 347, 1033, 1228, 1259, 2046, 2207, 2409
HphI GGTGA 2 cut(s) 959, 2624
Hpy166II GTNNAC 7 cut(s) 22, 1726, 1937, 1956, 2182, 2235, 2341
Hpy8I GTNNAC 7 cut(s) 22, 1726, 1937, 1956, 2182, 2235, 2341
Hpy99I CGWCG 5 cut(s) 161, 1477, 1519, 2483, 2486
HpyAV CCTTC 5 cut(s) 392, 1020, 1645, 2609, 2771
HpyCH4IV ACGT 2 cut(s) 255, 1221
HpyF10VI GCNNNNNNNGC 9 cut(s) 147, 158, 443, 553, 767, 899, 1121, 1356, 2378
HpySE526I ACGT 2 cut(s) 255, 1221
HspAI GCGC 3 cut(s) 150, 662, 2245
Kpn2I TCCGGA 2 cut(s) 1227, 2045
KspAI GTTAAC 1 cut(s) 1956
LguI GCTCTTC 2 cut(s) 1291, 1879
LmnI GCTCC 5 cut(s) 1281, 1486, 1808, 2636, 2710
Lsp1109I GCAGC 6 cut(s) 148, 379, 938, 1594, 1642, 2612
LweI GCATC 7 cut(s) 123, 354, 596, 649, 2140, 2329, 2692
MaeI CTAG 9 cut(s) 147, 266, 471, 771, 810, 912, 1143, 1173, 1187
MaeII ACGT 2 cut(s) 255, 1221
MbiI CCGCTC 1 cut(s) 1889
MfeI CAATTG 1 cut(s) 1377
MflI RGATCY 5 cut(s) 482, 505, 584, 985, 2197
MhlI GDGCHC 6 cut(s) 830, 1138, 1267, 1286, 1397, 2374
MlsI TGGCCA 1 cut(s) 1897
MluNI TGGCCA 1 cut(s) 1897
MlyI GAGTC 3 cut(s) 1076, 1115, 2099
MmeI TCCRAC 3 cut(s) 724, 1060, 1508
Mox20I TGGCCA 1 cut(s) 1897
Mph1103I ATGCAT 1 cut(s) 2322
MroI TCCGGA 2 cut(s) 1227, 2045
MroXI GAANNNNTTC 3 cut(s) 124, 1437, 1860
MscI TGGCCA 1 cut(s) 1897
MseI TTAA 7 cut(s) 95, 192, 738, 1218, 1955, 2310, 2424
MslI CAYNNNNRTG 6 cut(s) 234, 530, 561, 1407, 2136, 2700
Msp20I TGGCCA 1 cut(s) 1897
MspA1I CMGCKG 4 cut(s) 929, 1064, 1331, 2519
MspI CCGG 8 cut(s) 132, 347, 1033, 1228, 1259, 2046, 2207, 2409
MspR9I CCNGG 6 cut(s) 849, 1005, 1029, 1260, 1784, 2301
MunI CAATTG 1 cut(s) 1377
Mva1269I GAATGC 1 cut(s) 2602
MvaI CCWGG 5 cut(s) 849, 1005, 1029, 1784, 2301
MvnI CGCG 1 cut(s) 1801
MwoI GCNNNNNNNGC 9 cut(s) 147, 158, 443, 553, 767, 899, 1121, 1356, 2378
NciI CCSGG 1 cut(s) 1260
NcoI CCATGG 1 cut(s) 1499
NdeI CATATG 1 cut(s) 1916
NheI GCTAGC 1 cut(s) 146
NlaIV GGNNCC 3 cut(s) 507, 2620, 2632
NmuCI GTSAC 1 cut(s) 947
NsbI TGCGCA 1 cut(s) 2246
NsiI ATGCAT 1 cut(s) 2322
NspI RCATGY 1 cut(s) 2749
OliI CACNNNNGTG 2 cut(s) 234, 530
PaqCI CACCTGC 1 cut(s) 1406
PciSI GCTCTTC 2 cut(s) 1291, 1879
PcsI WCGNNNNNNNCGW 1 cut(s) 2769
PctI GAATGC 1 cut(s) 2602
PdmI GAANNNNTTC 3 cut(s) 124, 1437, 1860
PfeI GAWTC 9 cut(s) 179, 239, 305, 908, 1581, 1685, 2273, 2279, 2558
PflMI CCANNNNNTGG 4 cut(s) 878, 1772, 2330, 2714
PkrI GCNGC 6 cut(s) 163, 369, 928, 1609, 1657, 2602
PleI GAGTC 3 cut(s) 1075, 1114, 2099
PpsI GAGTC 3 cut(s) 1075, 1114, 2099
PpuMI RGGWCCY 2 cut(s) 458, 2618
Psp124BI GAGCTC 1 cut(s) 1286
Psp1406I AACGTT 2 cut(s) 255, 1221
Psp5II RGGWCCY 2 cut(s) 458, 2618
Psp6I CCWGG 5 cut(s) 847, 1003, 1027, 1782, 2299
PspFI CCCAGC 1 cut(s) 929
PspGI CCWGG 5 cut(s) 847, 1003, 1027, 1782, 2299
PspN4I GGNNCC 3 cut(s) 507, 2620, 2632
PspPI GGNCC 7 cut(s) 458, 752, 1001, 1007, 1256, 1469, 2618
PspPPI RGGWCCY 2 cut(s) 458, 2618
PstNI CAGNNNCTG 2 cut(s) 2108, 2690
PsuI RGATCY 5 cut(s) 482, 505, 584, 985, 2197
PvuII CAGCTG 3 cut(s) 929, 1064, 1331
RsaI GTAC 2 cut(s) 70, 705
RsaNI GTAC 2 cut(s) 69, 704
RseI CAYNNNNRTG 6 cut(s) 234, 530, 561, 1407, 2136, 2700
SacI GAGCTC 1 cut(s) 1286
SapI GCTCTTC 2 cut(s) 1291, 1879
SaqAI TTAA 7 cut(s) 95, 192, 738, 1218, 1955, 2310, 2424
SatI GCNGC 6 cut(s) 162, 368, 927, 1608, 1656, 2601
Sau96I GGNCC 7 cut(s) 458, 752, 1001, 1007, 1256, 1469, 2618
SchI GAGTC 3 cut(s) 1076, 1115, 2099
ScrFI CCNGG 6 cut(s) 849, 1005, 1029, 1260, 1784, 2301
SduI GDGCHC 6 cut(s) 830, 1138, 1267, 1286, 1397, 2374
SfaNI GCATC 7 cut(s) 123, 354, 596, 649, 2140, 2329, 2692
SfcI CTRYAG 2 cut(s) 1360, 2433
SinI GGWCC 7 cut(s) 458, 752, 1001, 1007, 1256, 1469, 2618
SmiMI CAYNNNNRTG 6 cut(s) 234, 530, 561, 1407, 2136, 2700
SmlI CTYRAG 1 cut(s) 989
SmoI CTYRAG 1 cut(s) 989
SpeI ACTAGT 3 cut(s) 470, 1142, 1186
SsiI CCGC 4 cut(s) 337, 1889, 1920, 2517
SspI AATATT 1 cut(s) 1216
SspMI CTAG 9 cut(s) 147, 266, 471, 771, 810, 912, 1143, 1173, 1187
SstI GAGCTC 1 cut(s) 1286
StyD4I CCNGG 6 cut(s) 847, 1003, 1027, 1258, 1782, 2299
StyI CCWWGG 4 cut(s) 15, 721, 1499, 1707
TaiI ACGT 2 cut(s) 258, 1224
TaqI TCGA 8 cut(s) 300, 332, 1167, 1464, 1882, 2643, 2655, 2724
TaqII GACCGA 1 cut(s) 1486
TfiI GAWTC 9 cut(s) 179, 239, 305, 908, 1581, 1685, 2273, 2279, 2558
Tru1I TTAA 7 cut(s) 95, 192, 738, 1218, 1955, 2310, 2424
Tru9I TTAA 7 cut(s) 95, 192, 738, 1218, 1955, 2310, 2424
TscAI CASTG 6 cut(s) 691, 1373, 1871, 2233, 2470, 2548
TseFI GTSAC 1 cut(s) 947
TseI GCWGC 6 cut(s) 161, 367, 926, 1607, 1655, 2600
Tsp45I GTSAC 1 cut(s) 947
TspDTI ATGAA 9 cut(s) 17, 91, 204, 456, 557, 1374, 1527, 2609, 2688
TspGWI ACGGA 4 cut(s) 51, 145, 1503, 1606
TspRI CASTG 6 cut(s) 691, 1373, 1871, 2233, 2470, 2548
Van91I CCANNNNNTGG 4 cut(s) 878, 1772, 2330, 2714
VpaK11BI GGWCC 7 cut(s) 458, 752, 1001, 1007, 1256, 1469, 2618
XapI RAATTY 5 cut(s) 98, 323, 680, 2068, 2125
XceI RCATGY 1 cut(s) 2749
XcmI CCANNNNNNNNNTGG 2 cut(s) 728, 1866
XmiI GTMKAC 1 cut(s) 2234
XmnI GAANNNNTTC 3 cut(s) 124, 1437, 1860
XspI CTAG 9 cut(s) 147, 266, 471, 771, 810, 912, 1143, 1173, 1187
Zsp2I ATGCAT 1 cut(s) 2322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.