Rorug02G0649500

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007241
Physical Location & Seq
Forward (+)
75840742 .. 75842929
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0649500.1

Sequence Viewer

Length: 867 bp
ATGGAGATAACAAGGACTCTCCTCCCTTCCTCCTCTTGCTCTAGTCTCCACCTCCACCTCCACCTCCGCACTCCGCTCCTCCATTTTCACGTCTCGCCTTCGCACTCACAGTCTCAGACCTCACTGCCCATTCCATCTCGCACCCGCTTCCGGAAACCTCTCGCCGCCTCCGATGGCACCACTTCCGCAACTAAGGTTGCTGGGGATGATCCCTCTCTTGCTGTGAAGAAGAAGGCAATGGATGTATCACCAGAACTCAAAGGAACTACCATATTCCTTGTGGGCATGAAGAGCTCCATAAAGACCAGTTTGGGGAAATTCCTCGCCAACGTGTTACGATACTATTACTTTGACAGTGATAGTTTGGTTGAGGAAGCTGCTGGCACTCAATCTGCCACCAAATCTTTAAGGGAGACTGACAAGAGTGGTTTCCAGGATTCCGAGACTGAAGTGTTGAAGCAATTATCATCCATGGGTCGGTTAGTGGTCTGTGCTGGAGATGGTGCAACTCAGAGTTCAACAAATCTGGCTCTTTTAAGACATGGGATCACGATATGGATTGACGTACCTTTAGACATTGTGGCCAGGAGTGTGGTCGAAGATCAAACTCAGCTCTCTGCATACAATCTATCTACTTCCGTATCCTATCCAGAGGTTTTGACTCACCTAAGTACTTCATATGAAGAGTTGAGAGGTGGATATGCAATAGCTGACGCAACCGTATCTCTTCAGCAAGTAGCTGGTAAGTTAGGTTATGATGAAATCGACGATGTAACCCCCGAAGACATGGCTTTGGAGGTTCTCAAGGAGGTAGAGAAATTGACCAGAGTGAAGAAGATGATGGAAGCAGCAGCAAGACCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

288

Amino Acids

31.34

Weight (kDa)

6.08

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SKI PF01202 99 - 221 1.1e-23 Shikimate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccBSI CCGCTC 1 cut(s) 76
AccIII TCCGGA 1 cut(s) 150
AciI CCGC 5 cut(s) 67, 74, 145, 165, 186
AclWI GGATC 2 cut(s) 203, 554
AcoI YGGCCR 1 cut(s) 582
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 2 cut(s) 468, 713
AfaI GTAC 2 cut(s) 567, 673
AfiI CCNNNNNNNGG 3 cut(s) 150, 312, 477
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 2 cut(s) 457, 519
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 2 cut(s) 432, 584
AluBI AGCT 5 cut(s) 294, 377, 613, 710, 740
AluI AGCT 5 cut(s) 294, 377, 613, 710, 740
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 5 cut(s) 50, 97, 117, 407, 437
AlwI GGATC 2 cut(s) 203, 554
Aor13HI TCCGGA 1 cut(s) 150
AoxI GGCC 1 cut(s) 582
ApeKI GCWGC 3 cut(s) 377, 848, 851
ApoI RAATTY 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 240, 656
BaeI ACNNNNGTAYC 2 cut(s) 624, 657
BalI TGGCCA 1 cut(s) 584
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 3 cut(s) 364, 860, 863
BccI CCATC 4 cut(s) 142, 167, 494, 835
BciT130I CCWGG 2 cut(s) 434, 586
BciVI GTATCC 1 cut(s) 652
BcoDI GTCTC 5 cut(s) 50, 97, 117, 407, 437
BfaI CTAG 1 cut(s) 42
BfuI GTATCC 1 cut(s) 652
BisI GCNGC 4 cut(s) 165, 378, 849, 852
BlsI GCNGC 4 cut(s) 166, 379, 850, 853
BmcAI AGTACT 1 cut(s) 673
Bme1390I CCNGG 2 cut(s) 434, 586
BmgBI CACGTC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 2 cut(s) 434, 586
BpiI GAAGAC 1 cut(s) 789
BpmI CTGGAG 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 788
BsaJI CCNNGG 1 cut(s) 471
BsaWI WCCGGW 1 cut(s) 150
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 312, 477
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 150
BseBI CCWGG 2 cut(s) 434, 586
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 3 cut(s) 211, 247, 467
BseLI CCNNNNNNNGG 3 cut(s) 150, 312, 477
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 3 cut(s) 128, 524, 623
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 3 cut(s) 11, 22, 68
BseXI GCAGC 3 cut(s) 364, 860, 863
BseYI CCCAGC 1 cut(s) 200
BshFI GGCC 1 cut(s) 584
BshNI GGYRCC 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 3 cut(s) 150, 312, 477
BsmAI GTCTC 5 cut(s) 50, 97, 117, 407, 437
BsmBI CGTCTC 1 cut(s) 97
BsnI GGCC 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 296
Bsp13I TCCGGA 1 cut(s) 150
Bsp143I GATC 3 cut(s) 208, 546, 601
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 5 cut(s) 67, 74, 145, 165, 186
BspANI GGCC 1 cut(s) 584
BspCNI CTCAG 3 cut(s) 127, 523, 622
BspEI TCCGGA 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 2 cut(s) 203, 554
BspQI GCTCTTC 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 3 cut(s) 208, 546, 601
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 2 cut(s) 434, 586
Bst4CI ACNGT 3 cut(s) 111, 356, 721
Bst6I CTCTTC 3 cut(s) 284, 678, 732
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 5 cut(s) 114, 192, 510, 609, 668
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 3 cut(s) 211, 247, 467
BstKTI GATC 3 cut(s) 211, 549, 604
BstMAI GTCTC 5 cut(s) 50, 97, 117, 407, 437
BstMBI GATC 3 cut(s) 208, 546, 601
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 2 cut(s) 434, 586
BstSCI CCNGG 2 cut(s) 432, 584
BstV1I GCAGC 3 cut(s) 364, 860, 863
BstV2I GAAGAC 1 cut(s) 789
BstXI CCANNNNNNTGG 1 cut(s) 592
BsuI GTATCC 1 cut(s) 652
BsuRI GGCC 1 cut(s) 584
BtgI CCRYGG 1 cut(s) 471
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 3 cut(s) 211, 247, 467
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 2 cut(s) 122, 361
Cac8I GCNNGC 1 cut(s) 382
CseI GACGC 1 cut(s) 722
Csp6I GTAC 2 cut(s) 566, 672
CviAII CATG 4 cut(s) 286, 472, 542, 787
CviJI RGCY 8 cut(s) 294, 377, 530, 584, 613, 710, 740, 791
CviKI_1 RGCY 8 cut(s) 294, 377, 530, 584, 613, 710, 740, 791
CviQI GTAC 2 cut(s) 566, 672
DdeI CTNAG 5 cut(s) 114, 192, 510, 609, 668
DpnI GATC 3 cut(s) 210, 548, 603
DpnII GATC 3 cut(s) 208, 546, 601
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 3 cut(s) 284, 678, 732
EarI CTCTTC 3 cut(s) 284, 678, 732
Ecl136II GAGCTC 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 294
Eco57I CTGAAG 2 cut(s) 468, 713
EcoICRI GAGCTC 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 432, 584
EcoT14I CCWWGG 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 471
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 4 cut(s) 289, 475, 545, 790
FatI CATG 4 cut(s) 285, 471, 541, 786
FauI CCCGC 1 cut(s) 152
FauNDI CATATG 1 cut(s) 679
Fnu4HI GCNGC 4 cut(s) 165, 378, 849, 852
FokI GGATG 3 cut(s) 218, 254, 454
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 4 cut(s) 165, 378, 849, 852
FspBI CTAG 1 cut(s) 42
GluI GCNGC 4 cut(s) 165, 378, 849, 852
GsaI CCCAGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 1 cut(s) 584
HapII CCGG 1 cut(s) 151
HgaI GACGC 1 cut(s) 722
Hin1II CATG 4 cut(s) 289, 475, 545, 790
HinfI GANTC 3 cut(s) 16, 437, 661
HpaII CCGG 1 cut(s) 151
HphI GGTGA 2 cut(s) 240, 656
Hpy188I TCNGA 4 cut(s) 117, 172, 442, 513
Hpy188III TCNNGA 3 cut(s) 151, 550, 650
Hpy99I CGWCG 1 cut(s) 770
HpyAV CCTTC 3 cut(s) 36, 108, 226
HpyCH4III ACNGT 3 cut(s) 111, 356, 721
HpyCH4IV ACGT 3 cut(s) 90, 330, 564
HpyCH4V TGCA 3 cut(s) 506, 620, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 5 cut(s) 114, 192, 510, 609, 668
HpySE526I ACGT 3 cut(s) 90, 330, 564
Hsp92II CATG 4 cut(s) 289, 475, 545, 790
Kpn2I TCCGGA 1 cut(s) 150
Kzo9I GATC 3 cut(s) 208, 546, 601
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 2 cut(s) 81, 299
Lsp1109I GCAGC 3 cut(s) 364, 860, 863
MaeI CTAG 1 cut(s) 42
MaeII ACGT 3 cut(s) 90, 330, 564
MaeIII GTNAC 2 cut(s) 333, 772
MalI GATC 3 cut(s) 210, 548, 603
MbiI CCGCTC 1 cut(s) 76
MboI GATC 3 cut(s) 208, 546, 601
MboII GAAGA 9 cut(s) 238, 241, 301, 611, 695, 719, 794, 844, 847
MhlI GDGCHC 1 cut(s) 296
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 3 cut(s) 317, 461, 818
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 2 cut(s) 10, 655
Mox20I TGGCCA 1 cut(s) 584
MroI TCCGGA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 584
MseI TTAA 3 cut(s) 407, 536, 865
Msp20I TGGCCA 1 cut(s) 584
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 2 cut(s) 434, 586
MvaI CCWGG 2 cut(s) 434, 586
MwoI GCNNNNNNNGC 1 cut(s) 291
NcoI CCATGG 1 cut(s) 471
NdeI CATATG 1 cut(s) 679
NdeII GATC 3 cut(s) 208, 546, 601
NlaIII CATG 4 cut(s) 289, 475, 545, 790
NlaIV GGNNCC 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 1 cut(s) 437
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 4 cut(s) 166, 379, 850, 853
PleI GAGTC 2 cut(s) 10, 655
PpsI GAGTC 2 cut(s) 10, 655
Psp124BI GAGCTC 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 432, 584
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 2 cut(s) 432, 584
PspN4I GGNNCC 1 cut(s) 178
RsaI GTAC 2 cut(s) 567, 673
RsaNI GTAC 2 cut(s) 566, 672
SacI GAGCTC 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 3 cut(s) 407, 536, 865
SatI GCNGC 4 cut(s) 165, 378, 849, 852
Sau3AI GATC 3 cut(s) 208, 546, 601
ScaI AGTACT 1 cut(s) 673
SchI GAGTC 2 cut(s) 10, 655
ScrFI CCNGG 2 cut(s) 434, 586
SduI GDGCHC 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
Sse9I AATT 3 cut(s) 317, 461, 818
SsiI CCGC 5 cut(s) 67, 74, 145, 165, 186
SspMI CTAG 1 cut(s) 42
SstI GAGCTC 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 432, 584
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 3 cut(s) 111, 356, 721
TaiI ACGT 3 cut(s) 93, 333, 567
TaqI TCGA 2 cut(s) 597, 765
TasI AATT 3 cut(s) 317, 461, 818
TatI WGTACW 1 cut(s) 671
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 3 cut(s) 407, 536, 865
Tru9I TTAA 3 cut(s) 407, 536, 865
TscAI CASTG 2 cut(s) 129, 361
TseI GCWGC 3 cut(s) 377, 848, 851
TspDTI ATGAA 4 cut(s) 302, 666, 696, 774
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 2 cut(s) 129, 361
XapI RAATTY 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XspI CTAG 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.