FvH4_6g04980

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007241
Physical Location & Seq
Reverse (-)
2756981 .. 2763928
6948 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04980.t2

Sequence Viewer

Length: 2871 bp
ATGAAGAAGAGCCTATACAACGGCAACAACAGCACCAAAGTCCAGACGAACAACGGAAATAATAATAATAGTAATCGGTTCCTTCCTACTTCTCTGAAATTCATCTCCTCTTGCATTAAGACCGCCTCCTCCGGCGTCCGGTCGGCCAGCGCCTCCGTCGCCGCTTCCATCTCCGCTGACCCGCACGATTCCCGAGACCAGGTGTTGTGGGCATGTTTTGACAGAGTAGAACTTGGTCCATCTTCCTTCAAACATGTTCTGTTACTTGGTTATGTCAATGGCTTTCAAGTCCTTGATGTTGAAGATGCCTCTGATGTTAGTGAGCTTGTATCAAAACGTGATGATCCGGTCACATTTTTACAGTTCCAGCCCATGCCTAGAATCTCTCAGGGTCCTGAAGGATTCAGATCTTCCCATCCATTACTCATGGTTGTTGCATGTGAAGAGTCTAAGAACTCTGGTATGACACAAAATGGAAGAGACGGTTTGGTAAATGGTTATTCCGAGCCTCAAACAAGCAACTCTGCTATGTCTCCTAGAGTTGTTCGGTTTTATTCACTAAGTTCTCACAGTTATGTTCATGTTCTGAGATTCCGCTCGACTGTGTATATGGTTCGATGCAGTCCTCTGATAGTGGCTGTTGGTCTTGCCTCTCAAATATACTGCTTTGACGCTGTCACTCTAGAGAACAAATTCAGTGTTCTTACTTATCCTGTCCCCCAGTTGGGAGTCCAAGGACATGTTGGGGTTAATATTGGATATGGTCCCATGGCTGTTGGTCCTAGGTGGTTGGCTTATGCCTCCAACAACCCTTTATTATCGAATACTAGCCGACTAAGCCCGCAAAGTCTTACACCTCCAGGCGTCAGTCCATCAACTTCACCAAGTGGTGGAAATCTAGTGGCTCGGTATGCCATGGAATCTAGTAAGCAGTTAGCTGCTGGGTTACTAAATCTGGGAGACATGGGTTACAAAACTTTGTCTAAGTACTATCAACCCGATGGTTCCAGCTCTCCAGTGTCATCAAATTCTATCTGGAAAGTTGGGAGGGTTGGATCACATTCAACAGAAACAGATATTGCTGGAATGGTTGTTGTAAAAGACATTGTTTCCAGGGCGATTGTTTCACAGTTTAGGGCACATACTAGTCCCATTTCTGCTCTATGTTTTGACCCCAGTGGGACTCTCCTTGTGACTGCCTCGATATATGGAAACAATATTAACATTTTTCGGATAATGCCATCACGTAGTGGATCTGGCACCCAGAGCTATGACTTGAATTCCTCTCATGTGCACCTTTACAAGCTCCATCGTGGCATGACAACAGCTGTGATCCAAGACATATGTTTCAGTCAATACAGTCAATGGATTGCAATTGTTTCATCAAGGGGAACATGCCATATTTTTACTCTTTCCCCCTTTGGTGGTGATACTACTCACAAGCAGAGTTCTCATGTTGATGGGCCTAGTCATTTGCCAGTTCCGTCTGTACCATGGTGGTTCACTCCTTATTTCATGACAAACCAGCAACTATTTTCTCCACCACCACCACCCGTTACCCTTTCTGTGGTTAGCAGAATAAAAGATAACTCTGGTTGGATCAACACAGTCAGTAATGCTGCATCTTCTGCAGCCGGAAAAGCTTCCATTCCATCTGGTGCTGTTACAGCTGTATTTCATAATTGTGTTGCTCATGATCTGCAAACTTCTCATTTAAAGGTAACTGCTCTGGAGCACCTATTGGTTTACACTCCTTCTGGTCACGCAGTTCAATTTAAACTACTGCCAAGAGTTGGGGTAGAGCCTGGTGAAGCTACATCAAGAACAGTGCCAGGTCATTCAGTACAAATACAGGATGAGGAGTTGCGAGTGAAAGTTGAACCTCTGCAGTGGTGGGATGTTTGCCGAAGAACTGATTGGCCTGAAAGAGAGGAATGCATTTCGGGGATAAAACTTGGGAGACGAGTAGATGAGGAGACAGTCATGGATACTTTTGATTGTGATGTTAATGGTATTGGGGATAAGGAGTCGGTGAAACCACTTGAGTGTTCTCACTTGTACCTTGCCAATGCTGAGGTTCAAATCAACTCTGGAAGGATTCCAATCTGGCAAAAGTCTAAGATATATTTCTATACAATGAGTACCTCGGGAGCCATTGAACAAAATGGTACTAAAGATCTTACTGGAGGAGAGATTGAAATAGAGAAGTTTCCTGTTCACGAGGTCGAAGTTAGGCGGAAGAATTTGCTACCTGTTTCTGATCAATTCCATAGAGTGCAGCCCAATTGGAGTGACAGGGATCTTATTGGAAGAGGATGCTCGAGTTCGTCTTCTGATTCTCCTGAAGCTAAAGAAAAGTTTCTTGAAAATGCTGGTATTTCTGGTGACAAGTTGGCATCATCTGGCAACCCAGACACTGGTGGTTCTTATCCATCCATTCTCCAATCTGGGAATGGAAATTATGGGGAAAGAAGAGGGAGATCTTTTTTGGCGTCACCTCTACTGAATCAAAGCTCCATGAAGAATAATGTTGTTACAATACCTTCAGAACAACCTACATCAGGTGTTTCTCTGGTTGAGGATAGTAATTTTTCAAAGAGTCTATCCACTTTAACTGGTGGTTCCCTTGCTGCTGATAGAACTATTGCAAAAGAGGTTCAGTCAGTGAACAGTGGTGAGGCCAGTGAAAGTTCAAATTTTTTCCAAGAGGGGTATTGTAAAGCATCACCTTTGAGCAACTTCCCTGAATCAACTGAAGTTGTAACTGATGTGGACAGCACCAACAGCCCCTGTGACAGGGAGAAATGTGAGGAAGATGGTGACGATGATGACATGCTTGGTGGTGTATTTGACTTCTCGGAGGAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

957

Amino Acids

103.64

Weight (kDa)

5.92

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 86 - 479 9.1e-35 BCAS3, WD40 repeat
BCAS3 PF12490 615 - 752 1.9e-45 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1259
AccB7I CCANNNNNTGG 3 cut(s) 890, 1793, 2417
AccBSI CCGCTC 1 cut(s) 597
AciI CCGC 7 cut(s) 123, 162, 174, 182, 595, 842, 2236
AclWI GGATC 6 cut(s) 338, 1063, 1261, 1327, 1607, 2307
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 6 cut(s) 98, 692, 1027, 1279, 2242, 2695
AcuI CTGAAG 4 cut(s) 417, 2364, 2529, 2775
AcyI GRCGYC 3 cut(s) 135, 864, 2492
AdeI CACNNNGTG 2 cut(s) 887, 1250
AfaI GTAC 6 cut(s) 989, 1491, 1845, 2060, 2143, 2170
AflIII ACRYGT 2 cut(s) 253, 739
AhlI ACTAGT 1 cut(s) 1145
AjnI CCWGG 5 cut(s) 198, 859, 1112, 1804, 1831
AjuI GAANNNNNNNTTGG 2 cut(s) 1900, 1932
AleI CACNNNNGTG 1 cut(s) 2044
Alw21I GWGCWC 2 cut(s) 1296, 1737
Alw26I GTCTC 6 cut(s) 189, 474, 537, 954, 1954, 1970
Alw44I GTGCAC 1 cut(s) 1292
AlwI GGATC 6 cut(s) 338, 1063, 1261, 1327, 1607, 2307
AlwNI CAGNNNCTG 2 cut(s) 2417, 2790
Ama87I CYCGRG 3 cut(s) 192, 2146, 2320
AoxI GGCC 4 cut(s) 144, 1463, 1919, 2679
ApaLI GTGCAC 1 cut(s) 1292
ApeKI GCWGC 5 cut(s) 938, 1619, 1631, 2278, 2630
ApoI RAATTY 6 cut(s) 98, 692, 1027, 1279, 2242, 2695
Asp700I GAANNNNTTC 3 cut(s) 692, 1642, 2358
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 5 cut(s) 236, 392, 764, 779, 1463
AsuHPI GGTGA 9 cut(s) 873, 1439, 1820, 2044, 2396, 2487, 2687, 2718, 2831
AvaI CYCGRG 3 cut(s) 192, 2146, 2320
AvaII GGWCC 4 cut(s) 236, 392, 764, 779
AvrII CCTAGG 1 cut(s) 782
BaeGI GKGCMC 2 cut(s) 1141, 1296
BanI GGYRCC 1 cut(s) 1259
BarI GAAGNNNNNNTAC 1 cut(s) 31
BauI CACGAG 1 cut(s) 2219
BbsI GAAGAC 1 cut(s) 2322
Bbv12I GWGCWC 2 cut(s) 1296, 1737
BbvCI CCTCAGC 1 cut(s) 2073
BbvI GCAGC 5 cut(s) 925, 1606, 1643, 2290, 2617
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 5 cut(s) 200, 861, 1114, 1806, 1833
BciVI GTATCC 1 cut(s) 1981
BclI TGATCA 1 cut(s) 2260
BcoDI GTCTC 6 cut(s) 189, 474, 537, 954, 1954, 1970
BcuI ACTAGT 1 cut(s) 1145
BfaI CTAG 9 cut(s) 378, 537, 683, 783, 828, 899, 924, 1146, 1467
BfmI CTRYAG 2 cut(s) 1629, 1886
BfoI RGCGCY 1 cut(s) 153
BfuI GTATCC 1 cut(s) 1981
BglII AGATCT 3 cut(s) 407, 2176, 2480
BisI GCNGC 6 cut(s) 162, 939, 1620, 1632, 2279, 2631
BlnI CCTAGG 1 cut(s) 782
BlsI GCNGC 6 cut(s) 163, 940, 1621, 1633, 2280, 2632
BmcAI AGTACT 1 cut(s) 989
Bme1390I CCNGG 5 cut(s) 200, 861, 1114, 1806, 1833
Bme18I GGWCC 4 cut(s) 236, 392, 764, 779
BmeT110I CYCGRG 3 cut(s) 192, 2146, 2320
BmgT120I GGNCC 5 cut(s) 236, 392, 764, 779, 1463
BmiI GGNNCC 7 cut(s) 80, 393, 766, 1006, 1261, 2152, 2623
BmrFI CCNGG 5 cut(s) 200, 861, 1114, 1806, 1833
BmrI ACTGGG 2 cut(s) 715, 1170
BmsI GCATC 6 cut(s) 295, 608, 1631, 2306, 2405, 2732
BmuI ACTGGG 2 cut(s) 715, 1170
BpiI GAAGAC 1 cut(s) 2322
BpmI CTGGAG 4 cut(s) 843, 999, 1751, 2205
Bpu10I CCTNAGC 1 cut(s) 2073
BpuEI CTTGAG 1 cut(s) 2063
BsaAI YACGTR 1 cut(s) 1247
BsaBI GATNNNNATC 2 cut(s) 406, 2102
BsaHI GRCGYC 3 cut(s) 135, 864, 2492
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 7 cut(s) 733, 768, 782, 915, 1113, 1493, 2145
BsaWI WCCGGW 2 cut(s) 138, 346
Bse1I ACTGG 8 cut(s) 721, 1016, 1176, 1478, 2188, 2422, 2620, 2682
Bse8I GATNNNNATC 2 cut(s) 406, 2102
BseBI CCWGG 5 cut(s) 200, 861, 1114, 1806, 1833
BseDI CCNNGG 7 cut(s) 733, 768, 782, 915, 1113, 1493, 2145
BseGI GGATG 5 cut(s) 415, 1861, 1903, 2321, 2432
BseJI GATNNNNATC 2 cut(s) 406, 2102
BseMII CTCAG 3 cut(s) 401, 578, 2064
BseNI ACTGG 8 cut(s) 721, 1016, 1176, 1478, 2188, 2422, 2620, 2682
BseRI GAGGAG 5 cut(s) 97, 118, 1874, 1988, 2202
BseSI GKGCMC 2 cut(s) 1141, 1296
BseXI GCAGC 5 cut(s) 925, 1606, 1643, 2290, 2617
BseYI CCCAGC 1 cut(s) 941
BsgI GTGCAG 1 cut(s) 2297
Bsh1285I CGRYCG 1 cut(s) 143
BshFI GGCC 4 cut(s) 146, 1465, 1921, 2681
BshNI GGYRCC 1 cut(s) 1259
BsiEI CGRYCG 1 cut(s) 143
BsiHKAI GWGCWC 2 cut(s) 1296, 1737
BsiHKCI CYCGRG 3 cut(s) 192, 2146, 2320
BsiSI CCGG 4 cut(s) 132, 139, 347, 1635
BslFI GGGAC 4 cut(s) 701, 750, 1134, 1195
BsmAI GTCTC 6 cut(s) 189, 474, 537, 954, 1954, 1970
BsmBI CGTCTC 2 cut(s) 474, 1954
BsmFI GGGAC 4 cut(s) 701, 750, 1134, 1195
BsmI GAATGC 1 cut(s) 1940
BsnI GGCC 4 cut(s) 146, 1465, 1921, 2681
Bso31I GGTCTC 1 cut(s) 189
BsoBI CYCGRG 3 cut(s) 192, 2146, 2320
Bsp1286I GDGCHC 3 cut(s) 1141, 1296, 1737
Bsp19I CCATGG 3 cut(s) 768, 915, 1493
BspACI CCGC 7 cut(s) 123, 162, 174, 182, 595, 842, 2236
BspANI GGCC 4 cut(s) 146, 1465, 1921, 2681
BspCNI CTCAG 3 cut(s) 400, 579, 2065
BspHI TCATGA 2 cut(s) 1515, 1693
BspLI GGNNCC 7 cut(s) 80, 393, 766, 1006, 1261, 2152, 2623
BspMAI CTGCAG 2 cut(s) 1633, 1890
BspPI GGATC 6 cut(s) 338, 1063, 1261, 1327, 1607, 2307
BspQI GCTCTTC 1 cut(s) 2
BspT107I GGYRCC 1 cut(s) 1259
BspTNI GGTCTC 1 cut(s) 189
BsrBI CCGCTC 1 cut(s) 597
BsrI ACTGG 8 cut(s) 721, 1016, 1176, 1478, 2188, 2422, 2620, 2682
BssECI CCNNGG 7 cut(s) 733, 768, 782, 915, 1113, 1493, 2145
BssNI GRCGYC 3 cut(s) 135, 864, 2492
BssSI CACGAG 1 cut(s) 2219
BssT1I CCWWGG 5 cut(s) 733, 768, 782, 915, 1493
Bst2BI CACGAG 1 cut(s) 2219
Bst2UI CCWGG 5 cut(s) 200, 861, 1114, 1806, 1833
Bst6I CTCTTC 5 cut(s) 2, 438, 472, 2305, 2467
BstACI GRCGYC 3 cut(s) 135, 864, 2492
BstAPI GCANNNNNTGC 1 cut(s) 1628
BstBAI YACGTR 1 cut(s) 1247
BstC8I GCNNGC 2 cut(s) 148, 842
BstDEI CTNAG 8 cut(s) 387, 450, 560, 587, 836, 984, 2073, 2118
BstDSI CCRYGG 3 cut(s) 768, 915, 1493
BstENI CCTNNNNNAGG 2 cut(s) 2559, 2794
BstF5I GGATG 5 cut(s) 415, 1861, 1903, 2321, 2432
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstMAI GTCTC 6 cut(s) 189, 474, 537, 954, 1954, 1970
BstMCI CGRYCG 1 cut(s) 143
BstMWI GCNNNNNNNGC 9 cut(s) 30, 158, 837, 911, 1266, 1628, 1640, 1667, 2784
BstNI CCWGG 5 cut(s) 200, 861, 1114, 1806, 1833
BstNSI RCATGY 6 cut(s) 216, 257, 441, 743, 1398, 2836
BstSCI CCNGG 5 cut(s) 198, 859, 1112, 1804, 1831
BstSFI CTRYAG 2 cut(s) 1629, 1886
BstSLI GKGCMC 2 cut(s) 1141, 1296
BstV1I GCAGC 5 cut(s) 925, 1606, 1643, 2290, 2617
BstV2I GAAGAC 1 cut(s) 2322
BstX2I RGATCY 5 cut(s) 407, 1253, 2176, 2299, 2480
BstYI RGATCY 5 cut(s) 407, 1253, 2176, 2299, 2480
BsuI GTATCC 1 cut(s) 1981
BsuRI GGCC 4 cut(s) 146, 1465, 1921, 2681
BtgI CCRYGG 3 cut(s) 768, 915, 1493
BtsCI GGATG 5 cut(s) 415, 1861, 1903, 2321, 2432
BtsI GCAGTG 1 cut(s) 1895
BtsIMutI CAGTG 9 cut(s) 703, 1023, 1183, 1833, 1895, 2415, 2670, 2677, 2689
Cac8I GCNNGC 2 cut(s) 148, 842
CaiI CAGNNNCTG 2 cut(s) 2417, 2790
CciI TCATGA 2 cut(s) 1515, 1693
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 5 cut(s) 236, 392, 764, 779, 1463
CseI GACGC 4 cut(s) 124, 680, 853, 2481
CsiI ACCWGGT 1 cut(s) 198
Csp6I GTAC 6 cut(s) 988, 1490, 1844, 2059, 2142, 2169
CviQI GTAC 6 cut(s) 988, 1490, 1844, 2059, 2142, 2169
DdeI CTNAG 8 cut(s) 387, 450, 560, 587, 836, 984, 2073, 2118
DraI TTTAAA 2 cut(s) 1716, 1777
DraIII CACNNNGTG 2 cut(s) 887, 1250
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 5 cut(s) 2, 438, 472, 2305, 2467
EarI CTCTTC 5 cut(s) 2, 438, 472, 2305, 2467
EciI GGCGGA 1 cut(s) 2251
Eco130I CCWWGG 5 cut(s) 733, 768, 782, 915, 1493
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 4 cut(s) 236, 392, 764, 779
Eco57I CTGAAG 4 cut(s) 417, 2364, 2529, 2775
Eco88I CYCGRG 3 cut(s) 192, 2146, 2320
EcoNI CCTNNNNNAGG 2 cut(s) 2559, 2794
EcoO109I RGGNCCY 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 1279
EcoRII CCWGG 5 cut(s) 198, 859, 1112, 1804, 1831
EcoT14I CCWWGG 5 cut(s) 733, 768, 782, 915, 1493
EcoT22I ATGCAT 1 cut(s) 1940
ErhI CCWWGG 5 cut(s) 733, 768, 782, 915, 1493
Esp3I CGTCTC 2 cut(s) 474, 1954
FaqI GGGAC 4 cut(s) 701, 750, 1134, 1195
FauI CCCGC 2 cut(s) 189, 849
FauNDI CATATG 1 cut(s) 1343
FbaI TGATCA 1 cut(s) 2260
Fnu4HI GCNGC 6 cut(s) 162, 939, 1620, 1632, 2279, 2631
FokI GGATG 5 cut(s) 402, 1868, 1910, 2328, 2419
Fsp4HI GCNGC 6 cut(s) 162, 939, 1620, 1632, 2279, 2631
FspBI CTAG 9 cut(s) 378, 537, 683, 783, 828, 899, 924, 1146, 1467
GlaI GCGC 1 cut(s) 151
GluI GCNGC 6 cut(s) 162, 939, 1620, 1632, 2279, 2631
GsaI CCCAGC 1 cut(s) 945
GsuI CTGGAG 4 cut(s) 843, 999, 1751, 2205
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 4 cut(s) 146, 1465, 1921, 2681
HapII CCGG 4 cut(s) 132, 139, 347, 1635
HgaI GACGC 4 cut(s) 124, 680, 853, 2481
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 3 cut(s) 135, 864, 2492
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 1641
HpaII CCGG 4 cut(s) 132, 139, 347, 1635
HphI GGTGA 9 cut(s) 873, 1439, 1820, 2044, 2396, 2487, 2687, 2718, 2831
Hpy166II GTNNAC 6 cut(s) 1294, 1503, 1747, 2218, 2668, 2773
Hpy8I GTNNAC 6 cut(s) 1294, 1503, 1747, 2218, 2668, 2773
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 7 cut(s) 92, 256, 392, 1764, 2088, 2553, 2858
HpyCH4IV ACGT 2 cut(s) 337, 1246
HpyF10VI GCNNNNNNNGC 9 cut(s) 30, 158, 837, 911, 1266, 1628, 1640, 1667, 2784
HpyF3I CTNAG 8 cut(s) 387, 450, 560, 587, 836, 984, 2073, 2118
HpySE526I ACGT 2 cut(s) 337, 1246
Hsp92I GRCGYC 3 cut(s) 135, 864, 2492
HspAI GCGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 2260
LguI GCTCTTC 1 cut(s) 2
LmnI GCTCC 4 cut(s) 1311, 1732, 2150, 2519
Lsp1109I GCAGC 5 cut(s) 925, 1606, 1643, 2290, 2617
LweI GCATC 6 cut(s) 295, 608, 1631, 2306, 2405, 2732
MabI ACCWGGT 1 cut(s) 198
MaeI CTAG 9 cut(s) 378, 537, 683, 783, 828, 899, 924, 1146, 1467
MaeII ACGT 2 cut(s) 337, 1246
MbiI CCGCTC 1 cut(s) 597
MfeI CAATTG 2 cut(s) 1374, 2284
MflI RGATCY 5 cut(s) 407, 1253, 2176, 2299, 2480
MhlI GDGCHC 3 cut(s) 1141, 1296, 1737
MlyI GAGTC 5 cut(s) 455, 738, 1177, 2036, 2608
MmeI TCCRAC 3 cut(s) 828, 1033, 1577
Mph1103I ATGCAT 1 cut(s) 1940
MroXI GAANNNNTTC 3 cut(s) 692, 1642, 2358
MseI TTAA 7 cut(s) 117, 750, 1221, 1715, 1776, 2007, 2612
MslI CAYNNNNRTG 4 cut(s) 573, 1458, 1683, 2044
MspA1I CMGCKG 3 cut(s) 176, 1328, 1670
MspI CCGG 4 cut(s) 132, 139, 347, 1635
MspR9I CCNGG 5 cut(s) 200, 861, 1114, 1806, 1833
MunI CAATTG 2 cut(s) 1374, 2284
Mva1269I GAATGC 1 cut(s) 1940
MvaI CCWGG 5 cut(s) 200, 861, 1114, 1806, 1833
MwoI GCNNNNNNNGC 9 cut(s) 30, 158, 837, 911, 1266, 1628, 1640, 1667, 2784
NcoI CCATGG 3 cut(s) 768, 915, 1493
NdeI CATATG 1 cut(s) 1343
NlaIV GGNNCC 7 cut(s) 80, 393, 766, 1006, 1261, 2152, 2623
NmuCI GTSAC 9 cut(s) 349, 676, 1192, 1760, 2291, 2384, 2493, 2792, 2819
NsiI ATGCAT 1 cut(s) 1940
NspI RCATGY 6 cut(s) 216, 257, 441, 743, 1398, 2836
OliI CACNNNNGTG 1 cut(s) 2044
PaeR7I CTCGAG 1 cut(s) 2320
PagI TCATGA 2 cut(s) 1515, 1693
PciI ACATGT 2 cut(s) 253, 739
PciSI GCTCTTC 1 cut(s) 2
PctI GAATGC 1 cut(s) 1940
PdmI GAANNNNTTC 3 cut(s) 692, 1642, 2358
PfeI GAWTC 9 cut(s) 188, 381, 402, 591, 920, 2098, 2336, 2506, 2747
PflFI GACNNNGTC 1 cut(s) 674
PflMI CCANNNNNTGG 3 cut(s) 890, 1793, 2417
PkrI GCNGC 6 cut(s) 163, 940, 1621, 1633, 2280, 2632
PleI GAGTC 5 cut(s) 454, 737, 1177, 2035, 2607
PpsI GAGTC 5 cut(s) 454, 737, 1177, 2035, 2607
Ppu21I YACGTR 1 cut(s) 1247
PpuMI RGGWCCY 1 cut(s) 392
PscI ACATGT 2 cut(s) 253, 739
Psp5II RGGWCCY 1 cut(s) 392
Psp6I CCWGG 5 cut(s) 198, 859, 1112, 1804, 1831
PspFI CCCAGC 1 cut(s) 941
PspGI CCWGG 5 cut(s) 198, 859, 1112, 1804, 1831
PspN4I GGNNCC 7 cut(s) 80, 393, 766, 1006, 1261, 2152, 2623
PspPI GGNCC 5 cut(s) 236, 392, 764, 779, 1463
PspPPI RGGWCCY 1 cut(s) 392
PspXI VCTCGAGB 1 cut(s) 2320
PstI CTGCAG 2 cut(s) 1633, 1890
PstNI CAGNNNCTG 2 cut(s) 2417, 2790
PsuI RGATCY 5 cut(s) 407, 1253, 2176, 2299, 2480
PsyI GACNNNGTC 1 cut(s) 674
PvuII CAGCTG 2 cut(s) 1328, 1670
RsaI GTAC 6 cut(s) 989, 1491, 1845, 2060, 2143, 2170
RsaNI GTAC 6 cut(s) 988, 1490, 1844, 2059, 2142, 2169
RseI CAYNNNNRTG 4 cut(s) 573, 1458, 1683, 2044
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 7 cut(s) 117, 750, 1221, 1715, 1776, 2007, 2612
SatI GCNGC 6 cut(s) 162, 939, 1620, 1632, 2279, 2631
Sau96I GGNCC 5 cut(s) 236, 392, 764, 779, 1463
ScaI AGTACT 1 cut(s) 989
SchI GAGTC 5 cut(s) 455, 738, 1177, 2036, 2608
ScrFI CCNGG 5 cut(s) 200, 861, 1114, 1806, 1833
SduI GDGCHC 3 cut(s) 1141, 1296, 1737
SexAI ACCWGGT 1 cut(s) 198
SfaNI GCATC 6 cut(s) 295, 608, 1631, 2306, 2405, 2732
SfcI CTRYAG 2 cut(s) 1629, 1886
Sfr274I CTCGAG 1 cut(s) 2320
SinI GGWCC 4 cut(s) 236, 392, 764, 779
SlaI CTCGAG 1 cut(s) 2320
SmiMI CAYNNNNRTG 4 cut(s) 573, 1458, 1683, 2044
SmlI CTYRAG 2 cut(s) 2042, 2320
SmoI CTYRAG 2 cut(s) 2042, 2320
SpeI ACTAGT 1 cut(s) 1145
SsiI CCGC 7 cut(s) 123, 162, 174, 182, 595, 842, 2236
SspI AATATT 2 cut(s) 754, 1219
SspMI CTAG 9 cut(s) 378, 537, 683, 783, 828, 899, 924, 1146, 1467
StyD4I CCNGG 5 cut(s) 198, 859, 1112, 1804, 1831
StyI CCWWGG 5 cut(s) 733, 768, 782, 915, 1493
TaiI ACGT 2 cut(s) 340, 1249
TaqI TCGA 6 cut(s) 599, 616, 821, 1202, 2226, 2321
TatI WGTACW 2 cut(s) 987, 1843
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 9 cut(s) 188, 381, 402, 591, 920, 2098, 2336, 2506, 2747
Tru1I TTAA 7 cut(s) 117, 750, 1221, 1715, 1776, 2007, 2612
Tru9I TTAA 7 cut(s) 117, 750, 1221, 1715, 1776, 2007, 2612
TscAI CASTG 9 cut(s) 703, 1023, 1183, 1833, 1895, 2422, 2670, 2677, 2689
TseFI GTSAC 9 cut(s) 349, 676, 1192, 1760, 2291, 2384, 2493, 2792, 2819
TseI GCWGC 5 cut(s) 938, 1619, 1631, 2278, 2630
Tsp45I GTSAC 9 cut(s) 349, 676, 1192, 1760, 2291, 2384, 2493, 2792, 2819
TspDTI ATGAA 7 cut(s) 17, 91, 569, 1371, 1504, 1667, 2534
TspGWI ACGGA 3 cut(s) 69, 145, 1473
TspRI CASTG 9 cut(s) 703, 1023, 1183, 1833, 1895, 2422, 2670, 2677, 2689
Tth111I GACNNNGTC 1 cut(s) 674
Van91I CCANNNNNTGG 3 cut(s) 890, 1793, 2417
VneI GTGCAC 1 cut(s) 1292
VpaK11BI GGWCC 4 cut(s) 236, 392, 764, 779
XagI CCTNNNNNAGG 2 cut(s) 2559, 2794
XapI RAATTY 6 cut(s) 98, 692, 1027, 1279, 2242, 2695
XbaI TCTAGA 1 cut(s) 682
XceI RCATGY 6 cut(s) 216, 257, 441, 743, 1398, 2836
XcmI CCANNNNNNNNNTGG 2 cut(s) 740, 2450
XhoI CTCGAG 1 cut(s) 2320
XmaJI CCTAGG 1 cut(s) 782
XmnI GAANNNNTTC 3 cut(s) 692, 1642, 2358
XspI CTAG 9 cut(s) 378, 537, 683, 783, 828, 899, 924, 1146, 1467
ZrmI AGTACT 1 cut(s) 989
Zsp2I ATGCAT 1 cut(s) 1940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.